Prupe.4G131800_v2.0.a1

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012112
Physical Location & Seq
Forward (+)
7295224 .. 7300803
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G131800.1

Sequence Viewer

Length: 1323 bp
ATGGCTGTCAGCTTTAGATATTGGGAAGACTGTGTTGATTCCCATGACTTGGAAGAAATGTGGAGCAGTCCTTGTGTAACTGCTGAATGGTTAGATGCTGGAGAGAGCAGAGGACAGAAAGTTCATCTCTCGCGCGATCCCGATGGACAGCCTTTTTTGACACAGACTGAGATGAAGATTGTGGCTGAGATCACCATCCGCAGGCACTTTGCTAACCAAATAGATCCCGATATGATTCGTGCTATTGCTGACCTTGAAAGTGATAGACAGCCCCTTGCTACCCGGTACGATAAAAAAACTAAGTCCACCACTGCAGGGATCATGCAACTTTTACCAAAAACTGCTGACTGGCTAGCTAGTGATATGGGCTACCAGGTATATGCAGTGCAAGGGAATCCAGATCTTCTGTTCAAGCCTTTTGTAAATGTATATTTTGGTGCCGCTTATCTTAAATGGTTATCAAGCTATGATCAAACAGAAAGAAGTGAAGAATATGTAGTTAGGGCATATAAAGGTGGTACCAAAAAGGCAACTCACAAATCAACTTTGAAATATTGGCAACGGTATCTTTCAGTCAAGGAAAGTCTTCCATCCAGAAAAAGTTTTGAAGGCCGTCCATCTCCAAATGAGGTTTCTACTTCAGCAGCCCCTCATGCTCATGCTCCTCCTCATGCTCCTCCTCATGCTCATGCTGCACCACCCGCACCACACAACGCAGGTCATCACATTTACTGGGACTCCAGAGCTTCTCCAGAAGACATGGCAGAAATGTGGAATCATCAAGACGTCGCTAGAGAGTGGACCACAACTGGAGAGAAAAGGGGAAAAGTACGATTCTCCCTTGATGACAAGAAAAGACCATACCTTTCTCGTGTAGAACTGAAGGCAGTTGCAGATATCGTACTAACAAAACACTTTAATACAAAGCCAATCAAAGCTTCAGTTCTTGGTGCTCTTGCAGAGGTTATTAGTTTGCGTTTCTTGAATGGCGTTGGACCACGTACTGGAATAATGGGAATCGACTATTCTACAGCTTTATGGCTTTTCATGGAGATGGGCTTTAAGGCATACACAATTCATTCTGCTGATGATCTTTCCATGCCATTTGTGTCAATGTACTTTGGTGCAGCCTATTTAGTATGGTTAGTGGAGTATGAAGGAAGGTCAAGAACTCCAGAGTTTGTTGTTCAGGCTTATATCTTGGGACCAAAGAATGTGAATCTTCAAGATTCAGGTCCACAGTGGCTCAAGTTTGAGGAAGCCTTGGGCAAGTACGAAGACACGAAGAAGCTTAAGGATCAAGGGAGCTGCACTGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

441

Amino Acids

49.85

Weight (kDa)

6.96

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 789
Acc36I ACCTGC 1 cut(s) 707
Acc65I GGTACC 1 cut(s) 518
AccB1I GGYRCC 2 cut(s) 437, 518
AccB7I CCANNNNNTGG 2 cut(s) 49, 1004
AccII CGCG 2 cut(s) 133, 135
AciI CCGC 3 cut(s) 199, 441, 702
AclWI GGATC 4 cut(s) 131, 218, 326, 1305
AcuI CTGAAG 3 cut(s) 624, 902, 924
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 7 cut(s) 287, 520, 831, 903, 1003, 1118, 1274
AfiI CCNNNNNNNGG 4 cut(s) 49, 201, 315, 1004
AflII CTTAAG 1 cut(s) 1292
AgsI TTSAA 6 cut(s) 257, 412, 550, 608, 985, 1226
AjnI CCWGG 1 cut(s) 372
AjuI GAANNNNNNNTTGG 4 cut(s) 616, 648, 922, 954
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 8 cut(s) 12, 356, 465, 746, 938, 1034, 1291, 1308
AluI AGCT 8 cut(s) 12, 356, 465, 746, 938, 1034, 1291, 1308
Alw21I GWGCWC 1 cut(s) 955
AlwI GGATC 4 cut(s) 131, 218, 326, 1305
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 4 cut(s) 644, 692, 1127, 1308
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 518
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 4 cut(s) 801, 995, 1205, 1235
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 352
AvaII GGWCC 4 cut(s) 801, 995, 1205, 1235
BanI GGYRCC 2 cut(s) 437, 518
BauI CACGAG 1 cut(s) 870
BbsI GAAGAC 4 cut(s) 33, 578, 762, 1284
Bbv12I GWGCWC 1 cut(s) 955
BbvI GCAGC 4 cut(s) 656, 679, 1139, 1295
BccI CCATC 5 cut(s) 137, 203, 598, 625, 1048
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 3 cut(s) 353, 357, 792
BfmI CTRYAG 2 cut(s) 312, 1029
BfrI CTTAAG 1 cut(s) 1292
BfuAI ACCTGC 1 cut(s) 707
BglII AGATCT 1 cut(s) 400
BisI GCNGC 5 cut(s) 441, 645, 693, 1128, 1309
BlsI GCNGC 5 cut(s) 442, 646, 694, 1129, 1310
Bme1390I CCNGG 2 cut(s) 283, 374
Bme18I GGWCC 4 cut(s) 801, 995, 1205, 1235
BmgT120I GGNCC 4 cut(s) 801, 995, 1205, 1235
BmiI GGNNCC 3 cut(s) 439, 520, 1206
BmrFI CCNGG 2 cut(s) 283, 374
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 1 cut(s) 85
BmtI GCTAGC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 4 cut(s) 33, 578, 762, 1284
BpmI CTGGAG 5 cut(s) 120, 724, 735, 831, 1158
BpuEI CTTGAG 1 cut(s) 1232
BpuMI CCSGG 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 1001
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 786
BsaJI CCNNGG 1 cut(s) 1263
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 201, 315, 1004
Bse1I ACTGG 4 cut(s) 353, 737, 814, 1009
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 1263
BseGI GGATG 2 cut(s) 195, 590
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 4 cut(s) 49, 201, 315, 1004
BseMII CTCAG 2 cut(s) 159, 177
BseNI ACTGG 4 cut(s) 353, 737, 814, 1009
BseRI GAGGAG 4 cut(s) 654, 657, 666, 669
BseXI GCAGC 4 cut(s) 656, 679, 1139, 1295
BsgI GTGCAG 3 cut(s) 678, 1146, 1294
Bsh1236I CGCG 2 cut(s) 133, 135
BshFI GGCC 1 cut(s) 612
BshNI GGYRCC 2 cut(s) 437, 518
BsiHKAI GWGCWC 1 cut(s) 955
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 2 cut(s) 749, 1218
BslI CCNNNNNNNGG 4 cut(s) 49, 201, 315, 1004
BsmFI GGGAC 2 cut(s) 749, 1218
BsnI GGCC 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 955
Bsp143I GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
BspACI CCGC 3 cut(s) 199, 441, 702
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 2 cut(s) 160, 178
BspFNI CGCG 2 cut(s) 133, 135
BspLI GGNNCC 3 cut(s) 439, 520, 1206
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 707
BspOI GCTAGC 1 cut(s) 356
BspPI GGATC 4 cut(s) 131, 218, 326, 1305
BspT107I GGYRCC 2 cut(s) 437, 518
BspTI CTTAAG 1 cut(s) 1292
BsrI ACTGG 4 cut(s) 353, 737, 814, 1009
BssECI CCNNGG 1 cut(s) 1263
BssMI GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
BssNI GRCGYC 1 cut(s) 786
BssSI CACGAG 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 1263
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 4 cut(s) 32, 564, 1242, 1315
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 1001
BstC8I GCNNGC 2 cut(s) 203, 354
BstDEI CTNAG 3 cut(s) 168, 186, 300
BstF5I GGATG 2 cut(s) 195, 590
BstFNI CGCG 2 cut(s) 133, 135
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 8 cut(s) 139, 192, 226, 321, 403, 472, 1093, 1300
BstMBI GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
BstMWI GCNNNNNNNGC 3 cut(s) 653, 692, 701
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 281, 372
BstSFI CTRYAG 2 cut(s) 312, 1029
BstUI CGCG 2 cut(s) 133, 135
BstV1I GCAGC 4 cut(s) 656, 679, 1139, 1295
BstV2I GAAGAC 4 cut(s) 33, 578, 762, 1284
BstX2I RGATCY 2 cut(s) 223, 400
BstYI RGATCY 2 cut(s) 223, 400
BsuRI GGCC 1 cut(s) 612
BtsCI GGATG 2 cut(s) 195, 590
BtsI GCAGTG 2 cut(s) 309, 390
BtsIMutI CAGTG 4 cut(s) 309, 390, 1247, 1311
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 2 cut(s) 203, 354
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 4 cut(s) 801, 995, 1205, 1235
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 7 cut(s) 286, 519, 830, 902, 1002, 1117, 1273
CviQI GTAC 7 cut(s) 286, 519, 830, 902, 1002, 1117, 1273
DdeI CTNAG 3 cut(s) 168, 186, 300
DpnI GATC 8 cut(s) 138, 191, 225, 320, 402, 471, 1092, 1299
DpnII GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
Eco130I CCWWGG 1 cut(s) 1263
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 4 cut(s) 801, 995, 1205, 1235
Eco57I CTGAAG 3 cut(s) 624, 902, 924
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 1263
ErhI CCWWGG 1 cut(s) 1263
FaqI GGGAC 2 cut(s) 749, 1218
FauI CCCGC 1 cut(s) 709
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 441, 645, 693, 1128, 1309
FokI GGATG 2 cut(s) 182, 577
Fsp4HI GCNGC 5 cut(s) 441, 645, 693, 1128, 1309
FspBI CTAG 3 cut(s) 353, 357, 792
GlaI GCGC 1 cut(s) 134
GluI GCNGC 5 cut(s) 441, 645, 693, 1128, 1309
GsuI CTGGAG 5 cut(s) 120, 724, 735, 831, 1158
HaeIII GGCC 1 cut(s) 612
HapII CCGG 1 cut(s) 283
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 786
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 2 cut(s) 936, 1289
HinfI GANTC 9 cut(s) 38, 235, 394, 737, 775, 834, 1017, 1219, 1229
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 306, 801, 1238
Hpy8I GTNNAC 3 cut(s) 306, 801, 1238
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 4 cut(s) 602, 877, 1151, 1155
HpyCH4III ACNGT 4 cut(s) 32, 564, 1242, 1315
HpyCH4IV ACGT 2 cut(s) 786, 1000
HpyCH4V TGCA 9 cut(s) 314, 325, 383, 388, 695, 893, 959, 1127, 1311
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 692, 701
HpyF3I CTNAG 3 cut(s) 168, 186, 300
HpySE526I ACGT 2 cut(s) 786, 1000
Hsp92I GRCGYC 1 cut(s) 786
HspAI GCGC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 522
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
LmnI GCTCC 4 cut(s) 63, 667, 679, 1305
Lsp1109I GCAGC 4 cut(s) 656, 679, 1139, 1295
LweI GCATC 1 cut(s) 85
MabI ACCWGGT 1 cut(s) 372
MaeI CTAG 3 cut(s) 353, 357, 792
MaeII ACGT 2 cut(s) 786, 1000
MaeIII GTNAC 1 cut(s) 76
MalI GATC 8 cut(s) 138, 191, 225, 320, 402, 471, 1092, 1299
MboI GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
MflI RGATCY 2 cut(s) 223, 400
MhlI GDGCHC 1 cut(s) 955
MluCI AATT 1 cut(s) 1074
MlyI GAGTC 1 cut(s) 731
MmeI TCCRAC 1 cut(s) 973
MnlI CCTC 9 cut(s) 104, 622, 660, 675, 678, 687, 690, 955, 1249
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 4 cut(s) 450, 918, 1062, 1293
MslI CAYNNNNRTG 4 cut(s) 657, 687, 1052, 1316
MspCI CTTAAG 1 cut(s) 1292
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 283, 374
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 2 cut(s) 133, 135
MwoI GCNNNNNNNGC 3 cut(s) 653, 692, 701
NciI CCSGG 1 cut(s) 283
NdeII GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
NheI GCTAGC 1 cut(s) 352
NlaIV GGNNCC 3 cut(s) 439, 520, 1206
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 8 cut(s) 38, 235, 394, 775, 834, 1017, 1219, 1229
PflMI CCANNNNNTGG 2 cut(s) 49, 1004
PkrI GCNGC 5 cut(s) 442, 646, 694, 1129, 1310
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
Ppu21I YACGTR 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 3 cut(s) 439, 520, 1206
PspPI GGNCC 4 cut(s) 801, 995, 1205, 1235
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 2 cut(s) 223, 400
RsaI GTAC 7 cut(s) 287, 520, 831, 903, 1003, 1118, 1274
RsaNI GTAC 7 cut(s) 286, 519, 830, 902, 1002, 1117, 1273
RseI CAYNNNNRTG 4 cut(s) 657, 687, 1052, 1316
SaqAI TTAA 4 cut(s) 450, 918, 1062, 1293
SatI GCNGC 5 cut(s) 441, 645, 693, 1128, 1309
Sau3AI GATC 8 cut(s) 136, 189, 223, 318, 400, 469, 1090, 1297
Sau96I GGNCC 4 cut(s) 801, 995, 1205, 1235
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 2 cut(s) 283, 374
SduI GDGCHC 1 cut(s) 955
SexAI ACCWGGT 1 cut(s) 372
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 312, 1029
SinI GGWCC 4 cut(s) 801, 995, 1205, 1235
SmiMI CAYNNNNRTG 4 cut(s) 657, 687, 1052, 1316
SmlI CTYRAG 2 cut(s) 1247, 1292
SmoI CTYRAG 2 cut(s) 1247, 1292
Sse9I AATT 1 cut(s) 1074
SsiI CCGC 3 cut(s) 199, 441, 702
SspI AATATT 1 cut(s) 554
SspMI CTAG 3 cut(s) 353, 357, 792
StyD4I CCNGG 2 cut(s) 281, 372
StyI CCWWGG 1 cut(s) 1263
TaaI ACNGT 4 cut(s) 32, 564, 1242, 1315
TaiI ACGT 2 cut(s) 789, 1003
TaqI TCGA 1 cut(s) 1020
TasI AATT 1 cut(s) 1074
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 8 cut(s) 38, 235, 394, 775, 834, 1017, 1219, 1229
Tru1I TTAA 4 cut(s) 450, 918, 1062, 1293
Tru9I TTAA 4 cut(s) 450, 918, 1062, 1293
TscAI CASTG 4 cut(s) 316, 390, 1247, 1318
TseI GCWGC 4 cut(s) 644, 692, 1127, 1308
TspDTI ATGAA 5 cut(s) 113, 188, 1036, 1067, 1170
TspRI CASTG 4 cut(s) 316, 390, 1247, 1318
Van91I CCANNNNNTGG 2 cut(s) 49, 1004
Vha464I CTTAAG 1 cut(s) 1292
VpaK11BI GGWCC 4 cut(s) 801, 995, 1205, 1235
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 3 cut(s) 353, 357, 792
ZraI GACGTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.