Rorug05G0081900

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012112
Physical Location & Seq
Reverse (-)
7081778 .. 7082281
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0081900.1

Sequence Viewer

Length: 504 bp
ATGGTTGCAGAATCTTGGTTTCGGAATCTGTGGAAGACTAAAAAGAAGCATGAGGCTGCAGGTCCTGAGAAAGCAGTGATTGGAATTTTGGCCTTTGAAGTTGCTAGCTTGATGTCTAAGATGGTCCATCTATGGAGATCTCTACGTGATAAAAAAGTTGCTAGGCCCAGAGAAAATATATCAAATTCGGAAGATATAAAAAAGCTTGTGGCAGATGATGATGATTTCATTGTAGGTAAAATATACATTGAATTGTTTGAGAATATGGTGAACCTAGCAAAATCTGTGGCTAGGCTTGGGAAGAAACATTGTACTGATCCTAGTTTGAAGGGTTTTGAATATGCAATTAGTGATTTGATCTATAATGGTGTTGACTCTTATGGATGGGAGTTTTCATTGAAGATGATAAAAATAAAGGCCAAGAGGATGCAGAAATTTATTTCAGTAAATGAAGATTTGCGTGACAAGATGAAAGTTCTTTCGGATCTTGAACAGACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

167

Amino Acids

19.3

Weight (kDa)

9.3

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 29 - 79 2.8e-20 Domain of unknown function (DUF3475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AclWI GGATC 2 cut(s) 311, 492
AcsI RAATTY 3 cut(s) 84, 184, 434
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 6 cut(s) 98, 251, 328, 338, 400, 491
AluBI AGCT 2 cut(s) 108, 205
AluI AGCT 2 cut(s) 108, 205
AlwI GGATC 2 cut(s) 311, 492
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 3 cut(s) 90, 164, 417
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 84, 184, 434
AspS9I GGNCC 3 cut(s) 62, 124, 165
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 104
AvaII GGWCC 2 cut(s) 62, 124
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 115, 135, 378
BfaI CTAG 5 cut(s) 105, 162, 275, 291, 321
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 137
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 62, 124
BmgT120I GGNCC 3 cut(s) 62, 124, 165
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 146
BseGI GGATG 2 cut(s) 389, 432
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 3 cut(s) 92, 166, 419
BsnI GGCC 3 cut(s) 92, 166, 419
Bsp143I GATC 4 cut(s) 137, 316, 357, 484
BspANI GGCC 3 cut(s) 92, 166, 419
BspCNI CTCAG 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 2 cut(s) 311, 492
BssMI GATC 4 cut(s) 137, 316, 357, 484
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 66, 117
BstF5I GGATG 2 cut(s) 389, 432
BstKTI GATC 4 cut(s) 140, 319, 360, 487
BstMBI GATC 4 cut(s) 137, 316, 357, 484
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 137, 484
BstYI RGATCY 2 cut(s) 137, 484
BsuRI GGCC 3 cut(s) 92, 166, 419
BtsCI GGATG 2 cut(s) 389, 432
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 62, 124, 165
Csp6I GTAC 1 cut(s) 312
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 1 cut(s) 50
CviJI RGCY 8 cut(s) 56, 92, 108, 166, 205, 290, 295, 419
CviKI_1 RGCY 8 cut(s) 56, 92, 108, 166, 205, 290, 295, 419
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 2 cut(s) 66, 117
DpnI GATC 4 cut(s) 139, 318, 359, 486
DpnII GATC 4 cut(s) 137, 316, 357, 484
Eco47I GGWCC 2 cut(s) 62, 124
EcoO109I RGGNCCY 1 cut(s) 62
FaeI CATG 1 cut(s) 53
FaiI YATR 9 cut(s) 51, 133, 179, 197, 244, 266, 342, 363, 381
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 396, 439
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 5 cut(s) 105, 162, 275, 291, 321
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 92, 166, 419
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 3 cut(s) 11, 25, 374
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 271, 373
Hpy188I TCNGA 3 cut(s) 24, 190, 484
Hpy188III TCNNGA 2 cut(s) 65, 488
Hpy8I GTNNAC 2 cut(s) 271, 373
HpyAV CCTTC 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 8, 59, 344, 430
HpyF3I CTNAG 2 cut(s) 66, 117
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 4 cut(s) 137, 316, 357, 484
LpnPI CCDG 3 cut(s) 45, 78, 181
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 417
MaeI CTAG 5 cut(s) 105, 162, 275, 291, 321
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 461
MalI GATC 4 cut(s) 139, 318, 359, 486
MboI GATC 4 cut(s) 137, 316, 357, 484
MboII GAAGA 5 cut(s) 46, 203, 313, 412, 464
MflI RGATCY 2 cut(s) 137, 484
MluCI AATT 5 cut(s) 84, 184, 251, 345, 434
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 2 cut(s) 46, 417
NdeII GATC 4 cut(s) 137, 316, 357, 484
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 11, 25
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
PspPI GGNCC 3 cut(s) 62, 124, 165
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 137, 484
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 137, 316, 357, 484
Sau96I GGNCC 3 cut(s) 62, 124, 165
SchI GAGTC 1 cut(s) 368
SetI ASST 7 cut(s) 64, 110, 148, 207, 238, 276, 500
SfaNI GCATC 1 cut(s) 417
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 62, 124
Sse9I AATT 5 cut(s) 84, 184, 251, 345, 434
SspMI CTAG 5 cut(s) 105, 162, 275, 291, 321
TaiI ACGT 1 cut(s) 148
TasI AATT 5 cut(s) 84, 184, 251, 345, 434
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 2 cut(s) 11, 25
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 4 cut(s) 217, 384, 465, 485
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 62, 124
XapI RAATTY 3 cut(s) 84, 184, 434
XspI CTAG 5 cut(s) 105, 162, 275, 291, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.