FvH4_3g14650

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012112
Physical Location & Seq
Forward (+)
9030974 .. 9039587
8614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14650.t1

Sequence Viewer

Length: 1302 bp
ATGGCTATCAGCTTTAAATATTGGAATGAATGTATTGACCCCTTGGACATGCAAGCACTGTGGAATGTTCCTAATGTGAGTGCTGAATGGGAAGATGCTGGAGAGACCAAAGGGCAGAAAGTTCACCTCTCACGTGATCCTGATGGACAGGTTTATTTGACACAGACAGAGATGAAGGCTGTGGCTGAGATCATCGTTCGCAGGCATTTTACTGGAAAGATAGATGCTGAAATGATTTGTGCTATTGCTGAACTTGAAAGTGATAGACAGCCCCTTGCTCAGCGGTATGACAAAAAAGCTAAGGCCACTCACCTAGGGATCATGCAAATTTTACCAAAAACTGCTGATTGGCTGGCTAGTGAGAAGGGTTACGGGGCTTATCAATTGAAAGGGAATGATAGTCTCCTGTTCCGGCCTTTTGAAAATATATATTTTGGTGCTGCTTATCTAATTTGGTTATCAAGCTTTGACCAGAAAGAAAGGAGTGAAGAATTTGTAGTTAGGGCATATAAAGGAGGTACCAAAAAGGCAACTCACAAATCAACTTTGAAGTATTGGCAACGGTATCTTTCCGTCAAAGAATCTCTTCCATCCAGAAAAAGTCTTGAAGGTCGTAAATCTGTGGAAGAGGTTTCTGCTTCTCTTGCCCTTGCTAAAAAGTCTGCTTCATCACAAAACACAGGTGGTACGTACACATATTGGGACTCTGTAGCTTCTCCAGAAGACATGGAAGACATGTGGAATCATCCTGTAGTCTCTAAAGAGTGGACTCTAACTGGAGAGAAACAGGGACAAGTGCGCTTCTCCCAAGATGATAAGAAAAGACCATATCTTTCTCGGATGGAACTGAAGGCTGTGGCAGAAATCATACTCATAAAGCACTTCAGTGCAAAGCCACTTAAAGTTTCAGTTCTTTGTGCTCTAGCAGAGATCATAAGCATGCGATTCCTGAGTGGCATTGGACCACGTCCTGGTATAATGGGAATCGAGTATTCTACAGCTGTATGGCTTTACAGGGAGATGGGCTTTAGGGCATATAGAATTAGCTCTGCTGATGATCTTTCCAAGCCATTTGTGTCTATGTACTTTGGTGCATCCTATTTATTATGGTTACTGGAATGTGAAGGAAGGTTACAACCTCCACAGTATGTTATTCAGGCTTATATCTCAGGGCCAAAGAATGTGAATCTTCAGGATACAGGTCCTGAGTATCTCAAGTTTGAGGAAGCCTTGAGCTACTACGAAGATACAAAAGATACAAAGCGGAATCCTAGGGATCAAGGGAGCTGCACCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

434

Amino Acids

49.34

Weight (kDa)

8.05

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLT PF01464 73 - 185 8.3e-13 Transglycosylase SLT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 971
AciI CCGC 2 cut(s) 283, 1264
AclWI GGATC 3 cut(s) 131, 326, 1284
AcsI RAATTY 2 cut(s) 327, 491
AcuI CTGAAG 3 cut(s) 868, 869, 1175
AcvI CACGTG 1 cut(s) 134
AfaI GTAC 4 cut(s) 520, 688, 692, 1085
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 5 cut(s) 257, 388, 422, 550, 608
AjiI CACGTC 1 cut(s) 968
AjnI CCWGG 1 cut(s) 970
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 8 cut(s) 12, 299, 465, 713, 1001, 1047, 1236, 1287
AluI AGCT 8 cut(s) 12, 299, 465, 713, 1001, 1047, 1236, 1287
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 3 cut(s) 98, 407, 760
AlwI GGATC 3 cut(s) 131, 326, 1284
AlwNI CAGNNNCTG 1 cut(s) 1205
AoxI GGCC 3 cut(s) 303, 413, 1172
ApeKI GCWGC 2 cut(s) 440, 1287
ApoI RAATTY 2 cut(s) 327, 491
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 518
AspA2I CCTAGG 2 cut(s) 313, 1271
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 3 cut(s) 962, 1172, 1202
AsuHPI GGTGA 2 cut(s) 116, 302
AvaII GGWCC 2 cut(s) 962, 1202
AvrII CCTAGG 2 cut(s) 313, 1271
BanI GGYRCC 1 cut(s) 518
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 729, 738
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 2 cut(s) 427, 1274
BccI CCATC 5 cut(s) 137, 598, 835, 1015, 1301
BciT130I CCWGG 1 cut(s) 972
BciVI GTATCC 1 cut(s) 1189
BcoDI GTCTC 3 cut(s) 98, 407, 760
BfaI CTAG 4 cut(s) 314, 357, 923, 1272
BfmI CTRYAG 3 cut(s) 708, 750, 996
BfuI GTATCC 1 cut(s) 1189
BisI GCNGC 2 cut(s) 441, 1288
BlnI CCTAGG 2 cut(s) 313, 1271
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 2 cut(s) 442, 1289
Bme1390I CCNGG 1 cut(s) 972
Bme18I GGWCC 2 cut(s) 962, 1202
BmgBI CACGTC 1 cut(s) 968
BmgT120I GGNCC 3 cut(s) 962, 1172, 1202
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 972
BmsI GCATC 3 cut(s) 85, 214, 1103
BpiI GAAGAC 2 cut(s) 729, 738
BpmI CTGGAG 3 cut(s) 120, 702, 798
Bpu10I CCTNAGC 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 1199, 1252
BsaAI YACGTR 2 cut(s) 134, 690
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 42, 313, 1271
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 3 cut(s) 217, 781, 1119
BseBI CCWGG 1 cut(s) 972
BseDI CCNNGG 3 cut(s) 42, 313, 1271
BseGI GGATG 4 cut(s) 590, 745, 846, 1094
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMII CTCAG 5 cut(s) 177, 293, 941, 1182, 1197
BseNI ACTGG 3 cut(s) 217, 781, 1119
BseXI GCAGC 2 cut(s) 427, 1274
BsgI GTGCAG 1 cut(s) 1273
BshFI GGCC 3 cut(s) 305, 415, 1174
BshNI GGYRCC 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 2 cut(s) 716, 804
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 3 cut(s) 98, 407, 760
BsmFI GGGAC 2 cut(s) 716, 804
BsnI GGCC 3 cut(s) 305, 415, 1174
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 2 cut(s) 283, 1264
BspANI GGCC 3 cut(s) 305, 415, 1174
BspCNI CTCAG 5 cut(s) 178, 292, 942, 1181, 1198
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 3 cut(s) 131, 326, 1284
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 3 cut(s) 217, 781, 1119
BssECI CCNNGG 3 cut(s) 42, 313, 1271
BssMI GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
BssT1I CCWWGG 3 cut(s) 42, 313, 1271
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 3 cut(s) 60, 564, 1146
Bst6I CTCTTC 2 cut(s) 591, 621
BstBAI YACGTR 2 cut(s) 134, 690
BstC8I GCNNGC 4 cut(s) 54, 203, 354, 941
BstDEI CTNAG 6 cut(s) 186, 279, 300, 950, 1168, 1206
BstF5I GGATG 4 cut(s) 590, 745, 846, 1094
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 6 cut(s) 139, 192, 321, 933, 1060, 1279
BstMAI GTCTC 3 cut(s) 98, 407, 760
BstMBI GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 3 cut(s) 52, 739, 943
BstSCI CCNGG 1 cut(s) 970
BstSFI CTRYAG 3 cut(s) 708, 750, 996
BstSNI TACGTA 1 cut(s) 690
BstV1I GCAGC 2 cut(s) 427, 1274
BstV2I GAAGAC 2 cut(s) 729, 738
BsuI GTATCC 1 cut(s) 1189
BsuRI GGCC 3 cut(s) 305, 415, 1174
BtrI CACGTC 1 cut(s) 968
BtsCI GGATG 4 cut(s) 590, 745, 846, 1094
BtsIMutI CAGTG 2 cut(s) 56, 892
Cac8I GCNNGC 4 cut(s) 54, 203, 354, 941
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 1 cut(s) 801
Cfr13I GGNCC 3 cut(s) 962, 1172, 1202
Csp6I GTAC 4 cut(s) 519, 687, 691, 1084
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 6 cut(s) 49, 322, 727, 736, 940, 1297
CviQI GTAC 4 cut(s) 519, 687, 691, 1084
DdeI CTNAG 6 cut(s) 186, 279, 300, 950, 1168, 1206
DpnI GATC 6 cut(s) 138, 191, 320, 932, 1059, 1278
DpnII GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 591, 621
EarI CTCTTC 2 cut(s) 591, 621
Eco105I TACGTA 1 cut(s) 690
Eco130I CCWWGG 3 cut(s) 42, 313, 1271
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 962, 1202
Eco57I CTGAAG 3 cut(s) 868, 869, 1175
Eco72I CACGTG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 1202
EcoRII CCWGG 1 cut(s) 970
EcoT14I CCWWGG 3 cut(s) 42, 313, 1271
ErhI CCWWGG 3 cut(s) 42, 313, 1271
FaeI CATG 6 cut(s) 52, 325, 730, 739, 943, 1300
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 2 cut(s) 716, 804
FatI CATG 6 cut(s) 48, 321, 726, 735, 939, 1296
Fnu4HI GCNGC 2 cut(s) 441, 1288
FokI GGATG 4 cut(s) 577, 732, 853, 1081
Fsp4HI GCNGC 2 cut(s) 441, 1288
FspBI CTAG 4 cut(s) 314, 357, 923, 1272
GlaI GCGC 1 cut(s) 800
GluI GCNGC 2 cut(s) 441, 1288
GsuI CTGGAG 3 cut(s) 120, 702, 798
HaeIII GGCC 3 cut(s) 305, 415, 1174
HapII CCGG 1 cut(s) 412
HhaI GCGC 1 cut(s) 801
Hin1II CATG 6 cut(s) 52, 325, 730, 739, 943, 1300
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 8 cut(s) 581, 704, 742, 769, 945, 984, 1186, 1267
HpaII CCGG 1 cut(s) 412
HphI GGTGA 2 cut(s) 116, 302
Hpy166II GTNNAC 3 cut(s) 124, 693, 768
Hpy188I TCNGA 1 cut(s) 840
Hpy188III TCNNGA 7 cut(s) 140, 594, 605, 719, 949, 1193, 1205
Hpy8I GTNNAC 3 cut(s) 124, 693, 768
HpyAV CCTTC 6 cut(s) 169, 358, 602, 844, 1118, 1122
HpyCH4III ACNGT 3 cut(s) 60, 564, 1146
HpyCH4IV ACGT 3 cut(s) 133, 689, 967
HpyCH4V TGCA 5 cut(s) 52, 325, 890, 1094, 1290
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 6 cut(s) 186, 279, 300, 950, 1168, 1206
HpySE526I ACGT 3 cut(s) 133, 689, 967
Hsp92II CATG 6 cut(s) 52, 325, 730, 739, 943, 1300
HspAI GCGC 1 cut(s) 799
KpnI GGTACC 1 cut(s) 522
Kzo9I GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
LmnI GCTCC 1 cut(s) 1284
Lsp1109I GCAGC 2 cut(s) 427, 1274
LweI GCATC 3 cut(s) 85, 214, 1103
MaeI CTAG 4 cut(s) 314, 357, 923, 1272
MaeII ACGT 3 cut(s) 133, 689, 967
MaeIII GTNAC 3 cut(s) 368, 1110, 1131
MalI GATC 6 cut(s) 138, 191, 320, 932, 1059, 1278
MboI GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
MboII GAAGA 8 cut(s) 104, 500, 578, 638, 734, 743, 1181, 1256
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 5 cut(s) 327, 383, 450, 491, 1041
MlyI GAGTC 2 cut(s) 698, 763
MnlI CCTC 5 cut(s) 137, 509, 622, 1149, 1216
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 15, 900
MslI CAYNNNNRTG 3 cut(s) 885, 938, 1295
MspA1I CMGCKG 2 cut(s) 283, 1001
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 972
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 972
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
NlaIII CATG 6 cut(s) 52, 325, 730, 739, 943, 1300
NlaIV GGNNCC 1 cut(s) 520
NspI RCATGY 3 cut(s) 52, 739, 943
OliI CACNNNNGTG 1 cut(s) 885
PaeI GCATGC 1 cut(s) 943
PciI ACATGT 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 6 cut(s) 581, 742, 945, 984, 1186, 1267
PflFI GACNNNGTC 1 cut(s) 966
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 2 cut(s) 442, 1289
PleI GAGTC 2 cut(s) 698, 763
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
PpsI GAGTC 2 cut(s) 698, 763
Ppu21I YACGTR 2 cut(s) 134, 690
PpuMI RGGWCCY 1 cut(s) 1202
PscI ACATGT 1 cut(s) 735
Psp5II RGGWCCY 1 cut(s) 1202
Psp6I CCWGG 1 cut(s) 970
PspCI CACGTG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 3 cut(s) 962, 1172, 1202
PspPPI RGGWCCY 1 cut(s) 1202
PstNI CAGNNNCTG 1 cut(s) 1205
PsyI GACNNNGTC 1 cut(s) 966
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 4 cut(s) 520, 688, 692, 1085
RsaNI GTAC 4 cut(s) 519, 687, 691, 1084
RseI CAYNNNNRTG 3 cut(s) 885, 938, 1295
SaqAI TTAA 2 cut(s) 15, 900
SatI GCNGC 2 cut(s) 441, 1288
Sau3AI GATC 6 cut(s) 136, 189, 318, 930, 1057, 1276
Sau96I GGNCC 3 cut(s) 962, 1172, 1202
SchI GAGTC 2 cut(s) 698, 763
ScrFI CCNGG 1 cut(s) 972
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 3 cut(s) 85, 214, 1103
SfcI CTRYAG 3 cut(s) 708, 750, 996
SinI GGWCC 2 cut(s) 962, 1202
SmiMI CAYNNNNRTG 3 cut(s) 885, 938, 1295
SmlI CTYRAG 2 cut(s) 1214, 1231
SmoI CTYRAG 2 cut(s) 1214, 1231
SnaBI TACGTA 1 cut(s) 690
SphI GCATGC 1 cut(s) 943
Sse9I AATT 5 cut(s) 327, 383, 450, 491, 1041
SsiI CCGC 2 cut(s) 283, 1264
SspI AATATT 1 cut(s) 20
SspMI CTAG 4 cut(s) 314, 357, 923, 1272
StyD4I CCNGG 1 cut(s) 970
StyI CCWWGG 3 cut(s) 42, 313, 1271
TaaI ACNGT 3 cut(s) 60, 564, 1146
TaiI ACGT 3 cut(s) 136, 692, 970
TaqI TCGA 1 cut(s) 987
TasI AATT 5 cut(s) 327, 383, 450, 491, 1041
TatI WGTACW 1 cut(s) 1083
TfiI GAWTC 6 cut(s) 581, 742, 945, 984, 1186, 1267
Tru1I TTAA 2 cut(s) 15, 900
Tru9I TTAA 2 cut(s) 15, 900
TscAI CASTG 2 cut(s) 63, 892
TseI GCWGC 2 cut(s) 440, 1287
TspDTI ATGAA 3 cut(s) 42, 188, 657
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 2 cut(s) 63, 892
Tth111I GACNNNGTC 1 cut(s) 966
Van91I CCANNNNNTGG 1 cut(s) 971
VpaK11BI GGWCC 2 cut(s) 962, 1202
XapI RAATTY 2 cut(s) 327, 491
XceI RCATGY 3 cut(s) 52, 739, 943
XmaJI CCTAGG 2 cut(s) 313, 1271
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 4 cut(s) 314, 357, 923, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.