Rh5BG169100

Transglycosylase SLT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012112
Physical Location & Seq
Forward (+)
17764572 .. 17770479
5908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG169100.1

Sequence Viewer

Length: 1293 bp
ATGGCTGTCAGCTATAAATTTTGGAATGAATGCATTGATCCCTTGGACATGCAAGCACTGTGGAATGTTCCTAAAGTGAGCGCTGAATGGGAAGATGCTGGAGAGACCAAAGGACAGAAAGTTCACCTCTCACGTGATCCTGATGGACAGGTTTATTTGACACAGACTGAGATGAAGGCTGTGGCTGAGATCGTCGTTAGCAGGCATTTTTCTGGAAAGATAGATCCTGATATGATTTGTGCTATTGCTGAACTTGAAAGTGATAGACAGCCACTTTGTCAGCGGTATGACAAAAAAGCTAAGGCCACTCACCTAGGGATGATGCAAATTTTACCAAAAACTGCTGATTGGCTGGCTAGTGAGAAGGGTTACGGGGCATATCAATTGAACGGGAATGAACTTCTCCTGTTCAGGCCTTTTGAAAATGTATATTTTGGTGCTGCTTATCTTATTTGGTTATCAAGCTTTGAGCAGAAAGAAAGAAGTGAGGAGTTTGTAGTTAGGGCATATAGAGGAGGTACTAAAAAGGCAACTCACAAATCAACTCTGAAGTATTGGCAACGGTATCTTTCCGTCAAAGAATCTCTTCCATCCAGAAAAAGTCTTGAAGGTCATCGATCTGTTGAAGAGGTTAATGCTTCTCTTGCCCTCGCTAAAAAGACTGGTTCATCGCAAAACACAGGTGGTATGTACACATATTGGGATTCAGTAGCTTCTCCAGAAGACATGGTGGACATGTGGAATCATCCTGAAGTCTCTAAAGAGTGGACTAAAGCTGGAGAGAAACAGGGACGAGTGCACTTCTCCCAAGATGATAAGAAAAGACCATATCTTTCTCGGGTGGAACTGAAGGCAGTGGCAGAAATCATACTCATAAAACACTTCAGCACAAAGCCACTTAAAGTTTCAGTTCTTTGTGCTCTGGCAGAGATTATAAGCATGCGATTCCTGAGTGGCATTGGACCACGTCCTGGTATAATGGGAATCGACTATTCTACAGTTGTATGGCTTTACAGGGAGATGGGCTTTAGGGCATATAGAACTATTTCTGTTGATGATATTTCCAAGCCATTTGTGTCAATGTACTTTGGTGCAGCCTATTTAGTATGGTTAGTGGAATGCGAAGGGAGGTTACAACCTCCACAGTATATTATTCAGGCTTATATCTCAGGGCCAAAGAATGTGAATCTTCAGGATACAGGTCCTGAGTATCTCAAGTTTGAGGAAGCCTTGAGCTACTATGAAGATACAAAGCCGAATCCTAGGGATCAAGGGAGCTGCACCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLT

Protein Analysis

430

Amino Acids

49.04

Weight (kDa)

7.08

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLT PF01464 73 - 185 3.2e-11 Transglycosylase SLT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16290 AT1G16290
fragaria_vesca FvH4_3g14650
malus_domestica MD05G1234300.v1.1 MD10G1210800.v1.1
prunus_persica Prupe.4G131800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024141
rosa_laevigata RLG00000032772
rosa_multiflora Rmu_sc0004033.1_g000015
rosa_roxburghii Rroxscaffold_1G00055100 Rroxscaffold_1G00055680
rosa_rugosa Rorug05G0081800 Rorug05G0081800 Rorug05G0081900
rosa_samantha Rh5AG172500 Rh5BG169100 Rh5CG184800 Rh5DG171300
rosa_wichuraiana Rw5G015560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 971
AciI CCGC 1 cut(s) 283
AclWI GGATC 4 cut(s) 32, 131, 218, 1275
AcsI RAATTY 2 cut(s) 17, 327
AcuI CTGAAG 5 cut(s) 569, 771, 868, 869, 1175
AcvI CACGTG 1 cut(s) 134
AfaI GTAC 3 cut(s) 520, 692, 1085
AfeI AGCGCT 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 5 cut(s) 257, 388, 422, 608, 626
AjiI CACGTC 1 cut(s) 968
AjnI CCWGG 1 cut(s) 970
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 7 cut(s) 12, 299, 465, 713, 776, 1236, 1278
AluI AGCT 7 cut(s) 12, 299, 465, 713, 776, 1236, 1278
Alw21I GWGCWC 2 cut(s) 801, 922
Alw26I GTCTC 2 cut(s) 98, 760
Alw44I GTGCAC 1 cut(s) 797
AlwI GGATC 4 cut(s) 32, 131, 218, 1275
AlwNI CAGNNNCTG 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 82
AoxI GGCC 3 cut(s) 303, 413, 1172
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 3 cut(s) 440, 1094, 1278
ApoI RAATTY 2 cut(s) 17, 327
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
Asp700I GAANNNNTTC 2 cut(s) 585, 1045
AspA2I CCTAGG 2 cut(s) 313, 1262
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 962, 1172, 1202
AsuHPI GGTGA 2 cut(s) 116, 302
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 2 cut(s) 962, 1202
AvrII CCTAGG 2 cut(s) 313, 1262
BaeGI GKGCMC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 2 cut(s) 801, 922
BbvI GCAGC 3 cut(s) 427, 1106, 1265
BccI CCATC 4 cut(s) 137, 598, 1015, 1292
BciT130I CCWGG 1 cut(s) 972
BciVI GTATCC 1 cut(s) 1189
BcoDI GTCTC 2 cut(s) 98, 760
BfaI CTAG 3 cut(s) 314, 357, 1263
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 1 cut(s) 1189
BisI GCNGC 3 cut(s) 441, 1095, 1279
BlnI CCTAGG 2 cut(s) 313, 1262
BlsI GCNGC 3 cut(s) 442, 1096, 1280
Bme1390I CCNGG 1 cut(s) 972
Bme18I GGWCC 2 cut(s) 962, 1202
BmeT110I CYCGRG 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 968
BmgT120I GGNCC 3 cut(s) 962, 1172, 1202
BmrFI CCNGG 1 cut(s) 972
BmsI GCATC 2 cut(s) 85, 312
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 3 cut(s) 120, 702, 798
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 1199, 1252
Bsa29I ATCGAT 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 42, 313, 1262
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 972
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 42, 313, 1262
BseGI GGATG 3 cut(s) 324, 590, 745
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMII CTCAG 5 cut(s) 159, 177, 941, 1182, 1197
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 2 cut(s) 503, 528
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 3 cut(s) 427, 1106, 1265
BsgI GTGCAG 2 cut(s) 1113, 1264
BshFI GGCC 3 cut(s) 305, 415, 1174
BshVI ATCGAT 1 cut(s) 616
BsiHKAI GWGCWC 2 cut(s) 801, 922
BsiHKCI CYCGRG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 2 cut(s) 98, 760
BsmFI GGGAC 1 cut(s) 804
BsmI GAATGC 2 cut(s) 35, 1124
BsnI GGCC 3 cut(s) 305, 415, 1174
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 801, 922
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
BspACI CCGC 1 cut(s) 283
BspANI GGCC 3 cut(s) 305, 415, 1174
BspCNI CTCAG 5 cut(s) 160, 178, 942, 1181, 1198
BspDI ATCGAT 1 cut(s) 616
BspPI GGATC 4 cut(s) 32, 131, 218, 1275
BspTNI GGTCTC 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 3 cut(s) 42, 313, 1262
BssMI GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
BssT1I CCWWGG 3 cut(s) 42, 313, 1262
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 4 cut(s) 60, 564, 1000, 1146
Bst6I CTCTTC 2 cut(s) 591, 621
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 4 cut(s) 54, 203, 354, 941
BstDEI CTNAG 6 cut(s) 168, 186, 300, 950, 1168, 1206
BstF5I GGATG 3 cut(s) 324, 590, 745
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 6 cut(s) 40, 139, 192, 226, 620, 1270
BstMAI GTCTC 2 cut(s) 98, 760
BstMBI GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 3 cut(s) 52, 739, 943
BstSCI CCNGG 1 cut(s) 970
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 427, 1106, 1265
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 616
BsuI GTATCC 1 cut(s) 1189
BsuRI GGCC 3 cut(s) 305, 415, 1174
BsuTUI ATCGAT 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 654
BtrI CACGTC 1 cut(s) 968
BtsCI GGATG 3 cut(s) 324, 590, 745
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 56, 861
Cac8I GCNNGC 4 cut(s) 54, 203, 354, 941
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 962, 1172, 1202
ClaI ATCGAT 1 cut(s) 616
Csp6I GTAC 3 cut(s) 519, 691, 1084
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 5 cut(s) 49, 727, 736, 940, 1288
CviQI GTAC 3 cut(s) 519, 691, 1084
DdeI CTNAG 6 cut(s) 168, 186, 300, 950, 1168, 1206
DpnI GATC 6 cut(s) 39, 138, 191, 225, 619, 1269
DpnII GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
Eam1104I CTCTTC 2 cut(s) 591, 621
EarI CTCTTC 2 cut(s) 591, 621
Eco130I CCWWGG 3 cut(s) 42, 313, 1262
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 962, 1202
Eco47III AGCGCT 1 cut(s) 82
Eco57I CTGAAG 5 cut(s) 569, 771, 868, 869, 1175
Eco72I CACGTG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 1202
EcoRII CCWGG 1 cut(s) 970
EcoT14I CCWWGG 3 cut(s) 42, 313, 1262
EcoT22I ATGCAT 1 cut(s) 35
ErhI CCWWGG 3 cut(s) 42, 313, 1262
FaeI CATG 5 cut(s) 52, 730, 739, 943, 1291
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 1 cut(s) 804
FatI CATG 5 cut(s) 48, 726, 735, 939, 1287
Fnu4HI GCNGC 3 cut(s) 441, 1095, 1279
FokI GGATG 3 cut(s) 331, 577, 732
Fsp4HI GCNGC 3 cut(s) 441, 1095, 1279
FspBI CTAG 3 cut(s) 314, 357, 1263
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 441, 1095, 1279
GsuI CTGGAG 3 cut(s) 120, 702, 798
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 3 cut(s) 305, 415, 1174
HhaI GCGC 1 cut(s) 83
Hin1II CATG 5 cut(s) 52, 730, 739, 943, 1291
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 7 cut(s) 581, 704, 742, 945, 984, 1186, 1258
HphI GGTGA 2 cut(s) 116, 302
Hpy166II GTNNAC 5 cut(s) 124, 693, 733, 768, 799
Hpy188I TCNGA 1 cut(s) 549
Hpy8I GTNNAC 5 cut(s) 124, 693, 733, 768, 799
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 5 cut(s) 169, 358, 602, 844, 1118
HpyCH4III ACNGT 4 cut(s) 60, 564, 1000, 1146
HpyCH4IV ACGT 2 cut(s) 133, 967
HpyCH4V TGCA 6 cut(s) 33, 52, 325, 799, 1094, 1281
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 6 cut(s) 168, 186, 300, 950, 1168, 1206
HpySE526I ACGT 2 cut(s) 133, 967
Hsp92II CATG 5 cut(s) 52, 730, 739, 943, 1291
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
LmnI GCTCC 1 cut(s) 1275
Lsp1109I GCAGC 3 cut(s) 427, 1106, 1265
LweI GCATC 2 cut(s) 85, 312
MaeI CTAG 3 cut(s) 314, 357, 1263
MaeII ACGT 2 cut(s) 133, 967
MaeIII GTNAC 2 cut(s) 368, 1131
MalI GATC 6 cut(s) 39, 138, 191, 225, 619, 1269
MboI GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
MboII GAAGA 6 cut(s) 104, 578, 638, 734, 1181, 1256
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 801, 922
MluCI AATT 3 cut(s) 17, 327, 383
MnlI CCTC 9 cut(s) 137, 481, 506, 509, 622, 659, 1122, 1149, 1216
Mph1103I ATGCAT 1 cut(s) 35
MroXI GAANNNNTTC 2 cut(s) 585, 1045
MseI TTAA 2 cut(s) 633, 900
MslI CAYNNNNRTG 1 cut(s) 1286
MspA1I CMGCKG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 972
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 2 cut(s) 35, 1124
MvaI CCWGG 1 cut(s) 972
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
NlaIII CATG 5 cut(s) 52, 730, 739, 943, 1291
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 3 cut(s) 52, 739, 943
PaeI GCATGC 1 cut(s) 943
PceI AGGCCT 1 cut(s) 415
PciI ACATGT 1 cut(s) 735
PctI GAATGC 2 cut(s) 35, 1124
PdmI GAANNNNTTC 2 cut(s) 585, 1045
PfeI GAWTC 7 cut(s) 581, 704, 742, 945, 984, 1186, 1258
PflFI GACNNNGTC 1 cut(s) 966
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 3 cut(s) 442, 1096, 1280
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 1202
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 1 cut(s) 935
Psp5II RGGWCCY 1 cut(s) 1202
Psp6I CCWGG 1 cut(s) 970
PspCI CACGTG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 970
PspPI GGNCC 3 cut(s) 962, 1172, 1202
PspPPI RGGWCCY 1 cut(s) 1202
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 966
RsaI GTAC 3 cut(s) 520, 692, 1085
RsaNI GTAC 3 cut(s) 519, 691, 1084
RseI CAYNNNNRTG 1 cut(s) 1286
SaqAI TTAA 2 cut(s) 633, 900
SatI GCNGC 3 cut(s) 441, 1095, 1279
Sau3AI GATC 6 cut(s) 37, 136, 189, 223, 617, 1267
Sau96I GGNCC 3 cut(s) 962, 1172, 1202
ScrFI CCNGG 1 cut(s) 972
SduI GDGCHC 2 cut(s) 801, 922
SfaNI GCATC 2 cut(s) 85, 312
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 2 cut(s) 962, 1202
SmiMI CAYNNNNRTG 1 cut(s) 1286
SmlI CTYRAG 2 cut(s) 1214, 1231
SmoI CTYRAG 2 cut(s) 1214, 1231
SphI GCATGC 1 cut(s) 943
Sse9I AATT 3 cut(s) 17, 327, 383
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 283
SspMI CTAG 3 cut(s) 314, 357, 1263
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 970
StyI CCWWGG 3 cut(s) 42, 313, 1262
TaaI ACNGT 4 cut(s) 60, 564, 1000, 1146
TaiI ACGT 2 cut(s) 136, 970
TaqI TCGA 2 cut(s) 616, 987
TasI AATT 3 cut(s) 17, 327, 383
TatI WGTACW 2 cut(s) 690, 1083
TfiI GAWTC 7 cut(s) 581, 704, 742, 945, 984, 1186, 1258
Tru1I TTAA 2 cut(s) 633, 900
Tru9I TTAA 2 cut(s) 633, 900
TscAI CASTG 2 cut(s) 63, 861
TseI GCWGC 3 cut(s) 440, 1094, 1278
TspDTI ATGAA 5 cut(s) 42, 188, 411, 657, 1257
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 2 cut(s) 63, 861
Tth111I GACNNNGTC 1 cut(s) 966
Van91I CCANNNNNTGG 1 cut(s) 971
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 962, 1202
XapI RAATTY 2 cut(s) 17, 327
XceI RCATGY 3 cut(s) 52, 739, 943
XmaJI CCTAGG 2 cut(s) 313, 1262
XmnI GAANNNNTTC 2 cut(s) 585, 1045
XspI CTAG 3 cut(s) 314, 357, 1263
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.