Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006507

Physical Location & Seq

Genomic Coordinates Forward (+)

5622746 .. 5625683

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGCCCATCTGGTAAGCTGGTGCAGATAGAACATGCCCTTACAGCTGTTGGATCTGGCCAAACATCTTTAGGGATTAAAGCTTCTAATGGAGTTGTCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGTGGCATGGGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGGAAACAGGCTGAGCAATATCTTCGTCTGTACAAAGAACCCATCCCTGTTACCCAACTTGTAAGGGAAACCGCTACTGTTATGCAAGAGTTTACTCAATCGGGAGGTGTTAGGCCTTTCGGGGTTTCCTTGCTGGTGGCTGGATATGATGACAAGGGTCCACAATTGTATCAGGTGGATCCATCTGGCTCTTATTTCTCCTGGAAAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTTTCAGGGTACTAACACCAGCAGAGATCGATGATTACCTTGCTGAAGTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

235

Amino Acids

25.7

Weight (kDa)

5.53

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	1.8e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	1.6e-58	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210
fragaria_vesca	FvH4_3g12361 FvH4_3g12361
malus_domestica	MD05G1224600.v1.1 MD10G1206300.v1.1
prunus_persica	Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1
pyrus_communis	pycom05g20720 pycom10g17610
rosa_chinensis	RchiOBHm_Chr5g0020171
rosa_multiflora	Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016
rosa_roxburghii	Rroxscaffold_1G00058040
rosa_samantha	Rh5BG147300 Rh5CG158700
rosa_wichuraiana	Rw5G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	3 cut(s)	97, 443, 456
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	4 cut(s)	17, 302, 533, 663
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	188, 586, 626
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	4 cut(s)	55, 83, 119, 479
AluI	AGCT	4 cut(s)	55, 83, 119, 479
AlwI	GGATC	3 cut(s)	97, 443, 456
AoxI	GGCC	2 cut(s)	94, 383
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	239, 428
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	239, 428
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BalI	TGGCCA	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	546
BccI	CCATC	3 cut(s)	52, 320, 460
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	606
BlpI	GCTNAGC	1 cut(s)	282
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	2 cut(s)	239, 428
BmgT120I	GGNCC	2 cut(s)	239, 428
BmiI	GGNNCC	3 cut(s)	240, 429, 450
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	188, 547
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	542, 595
Bsa29I	ATCGAT	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	96, 385
BshVI	ATCGAT	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	2 cut(s)	96, 385
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	89, 448, 606, 678
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	96, 385
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	240, 429, 450
BspPI	GGATC	3 cut(s)	97, 443, 456
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	4 cut(s)	89, 448, 606, 678
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	230, 349
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	4 cut(s)	92, 451, 609, 681
BstMBI	GATC	4 cut(s)	89, 448, 606, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	3 cut(s)	89, 448, 606
BstYI	RGATCY	3 cut(s)	89, 448, 606
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	96, 385
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	239, 428
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	16, 301, 532, 662
CviAII	CATG	4 cut(s)	71, 235, 487, 544
CviQI	GTAC	4 cut(s)	16, 301, 532, 662
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	4 cut(s)	91, 450, 608, 680
DpnII	GATC	4 cut(s)	89, 448, 606, 678
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	239, 428
Eco57I	CTGAAG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	74, 238, 490, 547
FaiI	YATR	6 cut(s)	72, 236, 353, 417, 488, 545
FatI	CATG	4 cut(s)	70, 234, 486, 543
FokI	GGATG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	96, 385
Hin1II	CATG	4 cut(s)	74, 238, 490, 547
HindIII	AAGCTT	2 cut(s)	117, 477
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	226, 363, 431, 534
Hpy188III	TCNNGA	2 cut(s)	242, 372
Hpy8I	GTNNAC	4 cut(s)	226, 363, 431, 534
HpyAV	CCTTC	3 cut(s)	168, 526, 584
HpyCH4III	ACNGT	2 cut(s)	230, 349
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	61, 140, 355, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	74, 238, 490, 547
Kzo9I	GATC	4 cut(s)	89, 448, 606, 678
LweI	GCATC	2 cut(s)	188, 547
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	91, 450, 608, 680
MboI	GATC	4 cut(s)	89, 448, 606, 678
MboII	GAAGA	4 cut(s)	277, 284, 505, 551
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	3 cut(s)	89, 448, 606
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	3 cut(s)	192, 434, 627
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	368, 592
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	4 cut(s)	89, 448, 606, 678
NlaIII	CATG	4 cut(s)	74, 238, 490, 547
NlaIV	GGNNCC	3 cut(s)	240, 429, 450
NspI	RCATGY	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	385
PfoI	TCCNGGA	1 cut(s)	470
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	240, 429, 450
PspPI	GGNCC	2 cut(s)	239, 428
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	89, 448, 606
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	17, 302, 533, 663
RsaNI	GTAC	4 cut(s)	16, 301, 532, 662
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	89, 448, 606, 678
Sau96I	GGNCC	2 cut(s)	239, 428
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	188, 547
SinI	GGWCC	2 cut(s)	239, 428
SmlI	CTYRAG	2 cut(s)	521, 610
SmoI	CTYRAG	2 cut(s)	521, 610
Sse9I	AATT	3 cut(s)	192, 434, 627
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	2 cut(s)	214, 622
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	230, 349
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	250, 681, 702
TasI	AATT	3 cut(s)	192, 434, 627
TatI	WGTACW	2 cut(s)	15, 300
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	239, 428
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.