The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210 |
| fragaria_vesca | FvH4_3g12361 FvH4_3g12361 |
| malus_domestica | MD05G1224600.v1.1 MD10G1206300.v1.1 |
| prunus_persica | Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 |
| pyrus_communis | pycom05g20720 pycom10g17610 |
| rosa_chinensis | RchiOBHm_Chr5g0020171 |
| rosa_multiflora | Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00058040 |
| rosa_samantha | Rh5BG147300 Rh5CG158700 |
| rosa_wichuraiana | Rw5G013060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 97, 443, 456 |
| AcuI | CTGAAG | 1 cut(s) | 22 |
| AfaI | GTAC | 4 cut(s) | 17, 302, 533, 643 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 215 |
| AgsI | TTSAA | 4 cut(s) | 123, 188, 197, 586 |
| AluBI | AGCT | 4 cut(s) | 55, 83, 119, 479 |
| AluI | AGCT | 4 cut(s) | 55, 83, 119, 479 |
| AlwI | GGATC | 3 cut(s) | 97, 443, 456 |
| AoxI | GGCC | 2 cut(s) | 94, 383 |
| AspS9I | GGNCC | 2 cut(s) | 239, 428 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 361 |
| AsuII | TTCGAA | 1 cut(s) | 503 |
| AvaII | GGWCC | 2 cut(s) | 239, 428 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 422, 455 |
| BamHI | GGATCC | 1 cut(s) | 448 |
| BccI | CCATC | 3 cut(s) | 52, 320, 460 |
| BceAI | ACGGC | 2 cut(s) | 370, 585 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 604, 638 |
| BlpI | GCTNAGC | 1 cut(s) | 282 |
| BmcAI | AGTACT | 1 cut(s) | 17 |
| Bme18I | GGWCC | 2 cut(s) | 239, 428 |
| BmgT120I | GGNCC | 2 cut(s) | 239, 428 |
| BmiI | GGNNCC | 4 cut(s) | 240, 309, 429, 450 |
| BmsI | GCATC | 2 cut(s) | 342, 547 |
| BoxI | GACNNNNGTC | 1 cut(s) | 426 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 282 |
| Bpu14I | TTCGAA | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 2 cut(s) | 542, 595 |
| Bsa29I | ATCGAT | 1 cut(s) | 681 |
| BsaJI | CCNNGG | 1 cut(s) | 345 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 215 |
| Bse1I | ACTGG | 1 cut(s) | 408 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 492 |
| BseCI | ATCGAT | 1 cut(s) | 681 |
| BseDI | CCNNGG | 1 cut(s) | 345 |
| BseGI | GGATG | 1 cut(s) | 312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BseMI | GCAATG | 2 cut(s) | 135, 492 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 408 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BshFI | GGCC | 2 cut(s) | 96, 385 |
| BshVI | ATCGAT | 1 cut(s) | 681 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| BsmI | GAATGC | 1 cut(s) | 511 |
| BsnI | GGCC | 2 cut(s) | 96, 385 |
| Bsp119I | TTCGAA | 1 cut(s) | 503 |
| Bsp1407I | TGTACA | 1 cut(s) | 300 |
| Bsp143I | GATC | 2 cut(s) | 89, 448 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 282 |
| BspANI | GGCC | 2 cut(s) | 96, 385 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspDI | ATCGAT | 1 cut(s) | 681 |
| BspLI | GGNNCC | 4 cut(s) | 240, 309, 429, 450 |
| BspPI | GGATC | 3 cut(s) | 97, 443, 456 |
| BspT104I | TTCGAA | 1 cut(s) | 503 |
| BsrDI | GCAATG | 2 cut(s) | 135, 492 |
| BsrGI | TGTACA | 1 cut(s) | 300 |
| BsrI | ACTGG | 1 cut(s) | 408 |
| BssECI | CCNNGG | 1 cut(s) | 345 |
| BssMI | GATC | 2 cut(s) | 89, 448 |
| Bst4CI | ACNGT | 5 cut(s) | 11, 223, 230, 349, 438 |
| Bst6I | CTCTTC | 1 cut(s) | 521 |
| BstAUI | TGTACA | 1 cut(s) | 300 |
| BstBI | TTCGAA | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 1 cut(s) | 279 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstDSI | CCRYGG | 1 cut(s) | 345 |
| BstF5I | GGATG | 1 cut(s) | 312 |
| BstKTI | GATC | 2 cut(s) | 92, 451 |
| BstMBI | GATC | 2 cut(s) | 89, 448 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 283 |
| BstNSI | RCATGY | 1 cut(s) | 74 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 426 |
| BstX2I | RGATCY | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 448 |
| Bsu15I | ATCGAT | 1 cut(s) | 681 |
| BsuRI | GGCC | 2 cut(s) | 96, 385 |
| BsuTUI | ATCGAT | 1 cut(s) | 681 |
| BtgI | CCRYGG | 1 cut(s) | 345 |
| BtsCI | GGATG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 2 cut(s) | 239, 428 |
| ClaI | ATCGAT | 1 cut(s) | 681 |
| CseI | GACGC | 1 cut(s) | 168 |
| Csp6I | GTAC | 4 cut(s) | 16, 301, 532, 642 |
| CviAII | CATG | 2 cut(s) | 71, 471 |
| CviQI | GTAC | 4 cut(s) | 16, 301, 532, 642 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 2 cut(s) | 91, 450 |
| DpnII | GATC | 2 cut(s) | 89, 448 |
| Eam1104I | CTCTTC | 1 cut(s) | 521 |
| EarI | CTCTTC | 1 cut(s) | 521 |
| Eco47I | GGWCC | 2 cut(s) | 239, 428 |
| Eco57I | CTGAAG | 1 cut(s) | 22 |
| EcoO109I | RGGNCCY | 1 cut(s) | 239 |
| FaeI | CATG | 2 cut(s) | 74, 474 |
| FaiI | YATR | 6 cut(s) | 72, 164, 236, 417, 472, 545 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 2 cut(s) | 70, 470 |
| FokI | GGATG | 1 cut(s) | 299 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| HaeIII | GGCC | 2 cut(s) | 96, 385 |
| HgaI | GACGC | 1 cut(s) | 168 |
| Hin1II | CATG | 2 cut(s) | 74, 474 |
| HindIII | AAGCTT | 2 cut(s) | 117, 477 |
| HinfI | GANTC | 2 cut(s) | 193, 205 |
| HphI | GGTGA | 2 cut(s) | 22, 361 |
| Hpy166II | GTNNAC | 4 cut(s) | 226, 363, 431, 534 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 251 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 521, 625 |
| Hpy8I | GTNNAC | 4 cut(s) | 226, 363, 431, 534 |
| HpyAV | CCTTC | 4 cut(s) | 46, 168, 580, 584 |
| HpyCH4III | ACNGT | 5 cut(s) | 11, 223, 230, 349, 438 |
| HpyCH4IV | ACGT | 1 cut(s) | 515 |
| HpyCH4V | TGCA | 4 cut(s) | 140, 355, 485, 509 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 283 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| HpySE526I | ACGT | 1 cut(s) | 515 |
| Hsp92II | CATG | 2 cut(s) | 74, 474 |
| Kzo9I | GATC | 2 cut(s) | 89, 448 |
| LweI | GCATC | 2 cut(s) | 342, 547 |
| MaeII | ACGT | 1 cut(s) | 515 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MalI | GATC | 2 cut(s) | 91, 450 |
| MboI | GATC | 2 cut(s) | 89, 448 |
| MboII | GAAGA | 2 cut(s) | 538, 551 |
| MflI | RGATCY | 1 cut(s) | 448 |
| MluCI | AATT | 1 cut(s) | 111 |
| MlyI | GAGTC | 1 cut(s) | 199 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 2 cut(s) | 522, 592 |
| MseI | TTAA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| Mva1269I | GAATGC | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 283 |
| NdeII | GATC | 2 cut(s) | 89, 448 |
| NlaIII | CATG | 2 cut(s) | 74, 474 |
| NlaIV | GGNNCC | 4 cut(s) | 240, 309, 429, 450 |
| NspI | RCATGY | 1 cut(s) | 74 |
| NspV | TTCGAA | 1 cut(s) | 503 |
| PctI | GAATGC | 1 cut(s) | 511 |
| PfeI | GAWTC | 1 cut(s) | 193 |
| PleI | GAGTC | 1 cut(s) | 199 |
| PpsI | GAGTC | 1 cut(s) | 199 |
| PpuMI | RGGWCCY | 1 cut(s) | 239 |
| PshAI | GACNNNNGTC | 1 cut(s) | 426 |
| Psp5II | RGGWCCY | 1 cut(s) | 239 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspN4I | GGNNCC | 4 cut(s) | 240, 309, 429, 450 |
| PspPI | GGNCC | 2 cut(s) | 239, 428 |
| PspPPI | RGGWCCY | 1 cut(s) | 239 |
| PsuI | RGATCY | 1 cut(s) | 448 |
| PvuII | CAGCTG | 1 cut(s) | 83 |
| RsaI | GTAC | 4 cut(s) | 17, 302, 533, 643 |
| RsaNI | GTAC | 4 cut(s) | 16, 301, 532, 642 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| Sau3AI | GATC | 2 cut(s) | 89, 448 |
| Sau96I | GGNCC | 2 cut(s) | 239, 428 |
| ScaI | AGTACT | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 199 |
| SetI | ASST | 8 cut(s) | 38, 57, 85, 121, 481, 518, 533, 595 |
| SfaNI | GCATC | 2 cut(s) | 342, 547 |
| SfuI | TTCGAA | 1 cut(s) | 503 |
| SinI | GGWCC | 2 cut(s) | 239, 428 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 2 cut(s) | 521, 610 |
| SmoI | CTYRAG | 2 cut(s) | 521, 610 |
| Sse9I | AATT | 1 cut(s) | 111 |
| SspI | AATATT | 1 cut(s) | 576 |
| TaaI | ACNGT | 5 cut(s) | 11, 223, 230, 349, 438 |
| TaiI | ACGT | 1 cut(s) | 518 |
| TaqI | TCGA | 5 cut(s) | 503, 597, 624, 681, 702 |
| TasI | AATT | 1 cut(s) | 111 |
| TatI | WGTACW | 2 cut(s) | 15, 300 |
| TfiI | GAWTC | 1 cut(s) | 193 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 189 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| TspRI | CASTG | 1 cut(s) | 235 |
| VpaK11BI | GGWCC | 2 cut(s) | 239, 428 |
| XceI | RCATGY | 1 cut(s) | 74 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 104 |
| ZrmI | AGTACT | 1 cut(s) | 17 |