Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006507

Physical Location & Seq

Genomic Coordinates Reverse (-)

15382646 .. 15386099

Gene Structure 3454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGCGACAGTCAGTACTCGTTTTCGCTCACCACTTTCAGTCCTTCAGGGAAGCTGGTGCAGATCGAGCACGCTTTGACAGCAGTCGGGTCGGGTCAGACCTCTTTGGGGATCAAAGCTTCCAATGGGGTTGTTATTGCCACCGAGAAGAAGCTACCTTCAATCTTGGTTGATGAAGCATCTGTTCAAAAGATACAGTGTTTGACACCAAATATTGGAGTTGTTTACAGTGGTATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAGCAGGCAGTGCAGTATCATCAGTTATATAAGGAACCAATCCCTGTTACTCAACTTGTGAGGGAAACTGCTGCTGTGATGCAAGAGTTTACTCAATCTGGTGGTGTAAGGCCTTTTGGAGTATCTCTTCTGGTTGCTGGTTTTGATGACAGTGGTCCCCAACTATTCCAGGTTGATCCTTCAGGTTCATATTTTTCATGGAAAGCCTCTGCAATGGGAAAGAATGTCTCAAATGCAAAAACTTTTCTTGAGAAGAGGTACACTGATGAAATTGAGCTTGAAGATGCTGTGCACACGGCTATTTTGACTCTGAAGGAGGGATTTGAAGGACAGATCTCAGGGAAGAACATTGAGATTGGAATAATTGGCGAAGACAAAATATTCAGGGTGCTATCCCCAGCAGAGATTGAAGATTATTTGGCTGAAGTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

235

Amino Acids

25.54

Weight (kDa)

5.22

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	1.8e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	1.6e-56	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210
fragaria_vesca	FvH4_3g12361 FvH4_3g12361
malus_domestica	MD05G1224600.v1.1 MD10G1206300.v1.1
prunus_persica	Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1
pyrus_communis	pycom05g20720 pycom10g17610
rosa_chinensis	RchiOBHm_Chr5g0020171
rosa_multiflora	Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016
rosa_roxburghii	Rroxscaffold_1G00058040
rosa_samantha	Rh5BG147300 Rh5CG158700
rosa_wichuraiana	Rw5G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AclWI	GGATC	2 cut(s)	119, 443
AcuI	CTGAAG	3 cut(s)	30, 438, 605
AfaI	GTAC	2 cut(s)	17, 533
AfiI	CCNNNNNNNGG	2 cut(s)	108, 215
AgsI	TTSAA	5 cut(s)	162, 188, 554, 599, 683
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	55, 119, 154, 550
AluI	AGCT	4 cut(s)	55, 119, 154, 550
Alw21I	GWGCWC	2 cut(s)	72, 567
Alw26I	GTCTC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	2 cut(s)	119, 443
AoxI	GGCC	1 cut(s)	383
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	239, 428
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	239, 428
BaeGI	GKGCMC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	72, 567
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	585
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	606
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	239, 428
BmgT120I	GGNCC	2 cut(s)	239, 428
BmiI	GGNNCC	3 cut(s)	240, 309, 430
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	3 cut(s)	188, 342, 547
BoxI	GACNNNNGTC	2 cut(s)	83, 426
BpiI	GAAGAC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 215
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	108, 215
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	670
BsgI	GTGCAG	2 cut(s)	80, 305
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	72, 567
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	108, 215
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	72, 567
Bsp143I	GATC	4 cut(s)	63, 111, 448, 606
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	623
BspLI	GGNNCC	3 cut(s)	240, 309, 430
BspPI	GGATC	2 cut(s)	119, 443
BsrDI	GCAATG	1 cut(s)	492
BssMI	GATC	4 cut(s)	63, 111, 448, 606
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	4 cut(s)	11, 198, 230, 425
Bst6I	CTCTTC	2 cut(s)	405, 521
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	72, 279
BstDEI	CTNAG	1 cut(s)	610
BstKTI	GATC	4 cut(s)	66, 114, 451, 609
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	4 cut(s)	63, 111, 448, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
BstNI	CCWGG	1 cut(s)	443
BstPAI	GACNNNNGTC	2 cut(s)	83, 426
BstSCI	CCNGG	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	5 cut(s)	203, 235, 288, 430, 534
Cac8I	GCNNGC	2 cut(s)	72, 279
Cfr13I	GGNCC	2 cut(s)	239, 428
Csp6I	GTAC	2 cut(s)	16, 532
CviAII	CATG	1 cut(s)	471
CviJI	RGCY	8 cut(s)	55, 119, 154, 385, 479, 550, 572, 695
CviKI_1	RGCY	8 cut(s)	55, 119, 154, 385, 479, 550, 572, 695
CviQI	GTAC	2 cut(s)	16, 532
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	4 cut(s)	65, 113, 450, 608
DpnII	GATC	4 cut(s)	63, 111, 448, 606
Eam1104I	CTCTTC	2 cut(s)	405, 521
EarI	CTCTTC	2 cut(s)	405, 521
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	239, 428
Eco57I	CTGAAG	3 cut(s)	30, 438, 605
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	474
FaiI	YATR	5 cut(s)	236, 301, 303, 463, 472
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	226, 363, 534, 565
Hpy188I	TCNGA	3 cut(s)	99, 264, 585
Hpy188III	TCNNGA	2 cut(s)	242, 521
Hpy8I	GTNNAC	4 cut(s)	226, 363, 534, 565
HpyAV	CCTTC	5 cut(s)	54, 168, 462, 580, 593
HpyCH4III	ACNGT	4 cut(s)	11, 198, 230, 425
HpyCH4V	TGCA	6 cut(s)	61, 286, 355, 485, 509, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
HpyF3I	CTNAG	1 cut(s)	610
Hsp92II	CATG	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	63, 111, 448, 606
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	3 cut(s)	188, 342, 547
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	65, 113, 450, 608
MboI	GATC	4 cut(s)	63, 111, 448, 606
MboII	GAAGA	7 cut(s)	160, 392, 538, 566, 628, 656, 695
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	72, 567
MluCI	AATT	2 cut(s)	543, 636
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	5 cut(s)	112, 327, 490, 522, 583
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
NdeII	GATC	4 cut(s)	63, 111, 448, 606
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	3 cut(s)	240, 309, 430
PceI	AGGCCT	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	2 cut(s)	83, 426
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	240, 309, 430
PspPI	GGNCC	2 cut(s)	239, 428
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	606
RsaI	GTAC	2 cut(s)	17, 533
RsaNI	GTAC	2 cut(s)	16, 532
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	4 cut(s)	63, 111, 448, 606
Sau96I	GGNCC	2 cut(s)	239, 428
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	2 cut(s)	72, 567
SetI	ASST	9 cut(s)	57, 104, 121, 156, 160, 447, 460, 533, 552
SfaNI	GCATC	3 cut(s)	188, 342, 547
SinI	GGWCC	2 cut(s)	239, 428
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	543, 636
SseBI	AGGCCT	1 cut(s)	385
SspI	AATATT	2 cut(s)	214, 654
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	11, 198, 230, 425
TaqI	TCGA	3 cut(s)	66, 250, 702
TasI	AATT	2 cut(s)	543, 636
TatI	WGTACW	1 cut(s)	15
TscAI	CASTG	5 cut(s)	203, 235, 288, 430, 541
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	189, 450, 459, 555
TspRI	CASTG	5 cut(s)	203, 235, 288, 430, 541
Van91I	CCANNNNNTGG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	239, 428
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.