Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006507

Physical Location & Seq

Genomic Coordinates Reverse (-)

7514926 .. 7520664

Gene Structure 5739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGGGATAGTCAGTACTCATTTTCTCTTACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCCTAACAGCAGTTGGGTCTGGCCAGACATCTTTAGGGATTAAAGCTGCTAATGGAGTTGTCATTGCAACAGAGAAGAAACTCCCATCTATATTAGTTGATGAAACATCTATTCAGAAAATTCAGTTATTGACGCCAAACATTGGAGTTGTTTACAGTGGAATGGGTCCAGATTTCAGAGTTCTGGTTCGTAAAAGCAGGAAACAGGCAGAGCAATATCATCGGTTGTACAAAGAACCAATCCCCGTTACCCAACTTGTGAGGGAAATTGCTGCTGTTATGCAGGAGTTCACACAGTCGGGTGGTGTAAGGCCTTTTGGAGTTTCACTGCTGGTTGCTGGCTTTGATGACAAAGGTCCACAACTATATCAGGTGGACCCATCAGGTTCATACTTTTCATGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAAACATTTCTTGAGAAAAGGTACACTGAGGACATGGAACTTGACGATGCTGTCCACACTGCAATATTGACCCTGAAAGAAGGATTTGAAGGACAAATTTCTGGCAAAAACATTGAGATTGGCATAATTGGTACTGACAAAAAATTCAGAGTTCTTACACCAGCTGAAATTGAAGATTACTTGGCCGAAGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

236

Amino Acids

25.71

Weight (kDa)

5.74

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210
fragaria_vesca	FvH4_3g12361 FvH4_3g12361
malus_domestica	MD05G1224600.v1.1 MD10G1206300.v1.1
prunus_persica	Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1
pyrus_communis	pycom05g20720 pycom10g17610
rosa_chinensis	RchiOBHm_Chr5g0020171
rosa_multiflora	Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016
rosa_roxburghii	Rroxscaffold_1G00058040
rosa_samantha	Rh5BG147300 Rh5CG158700
rosa_wichuraiana	Rw5G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	215
AcoI	YGGCCR	2 cut(s)	94, 693
AcsI	RAATTY	3 cut(s)	192, 606, 653
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	4 cut(s)	17, 302, 533, 643
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	68, 599, 683
AluBI	AGCT	4 cut(s)	55, 119, 479, 674
AluI	AGCT	4 cut(s)	55, 119, 479, 674
AoxI	GGCC	3 cut(s)	94, 383, 693
ApeKI	GCWGC	2 cut(s)	119, 344
ApoI	RAATTY	3 cut(s)	192, 606, 653
AspS9I	GGNCC	3 cut(s)	239, 428, 448
AvaII	GGWCC	3 cut(s)	239, 428, 448
BalI	TGGCCA	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	106, 331
BccI	CCATC	2 cut(s)	166, 460
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BisI	GCNGC	2 cut(s)	120, 345
BlsI	GCNGC	2 cut(s)	121, 346
BmcAI	AGTACT	1 cut(s)	17
Bme18I	GGWCC	3 cut(s)	239, 428, 448
BmgT120I	GGNCC	3 cut(s)	239, 428, 448
BmiI	GGNNCC	2 cut(s)	240, 450
BmsI	GCATC	1 cut(s)	547
BoxI	GACNNNNGTC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	106, 331
BshFI	GGCC	3 cut(s)	96, 385, 695
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	3 cut(s)	96, 385, 695
Bsp1407I	TGTACA	1 cut(s)	300
BspANI	GGCC	3 cut(s)	96, 385, 695
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	240, 450
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	230, 369
BstACI	GRCGYC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	106, 331
BsuRI	GGCC	3 cut(s)	96, 385, 695
BtsI	GCAGTG	2 cut(s)	398, 567
BtsIMutI	CAGTG	4 cut(s)	235, 398, 534, 567
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	3 cut(s)	239, 428, 448
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	16, 301, 532, 642
CviAII	CATG	3 cut(s)	71, 471, 544
CviJI	RGCY	8 cut(s)	55, 96, 119, 385, 414, 479, 674, 695
CviKI_1	RGCY	8 cut(s)	55, 96, 119, 385, 414, 479, 674, 695
CviQI	GTAC	4 cut(s)	16, 301, 532, 642
DdeI	CTNAG	1 cut(s)	537
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	2 cut(s)	94, 693
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	239, 428, 448
FaeI	CATG	3 cut(s)	74, 474, 547
FaiI	YATR	9 cut(s)	72, 164, 353, 439, 463, 472, 488, 545, 635
FatI	CATG	3 cut(s)	70, 470, 543
Fnu4HI	GCNGC	2 cut(s)	120, 345
Fsp4HI	GCNGC	2 cut(s)	120, 345
GluI	GCNGC	2 cut(s)	120, 345
HaeIII	GGCC	3 cut(s)	96, 385, 695
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	74, 474, 547
HindIII	AAGCTT	2 cut(s)	53, 477
Hpy166II	GTNNAC	6 cut(s)	226, 363, 431, 448, 534, 565
Hpy188I	TCNGA	4 cut(s)	63, 189, 251, 659
Hpy188III	TCNNGA	2 cut(s)	242, 521
Hpy8I	GTNNAC	6 cut(s)	226, 363, 431, 448, 534, 565
HpyAV	CCTTC	3 cut(s)	54, 584, 593
HpyCH4III	ACNGT	2 cut(s)	230, 369
HpyCH4V	TGCA	4 cut(s)	140, 355, 509, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	537
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	74, 474, 547
Lsp1109I	GCAGC	2 cut(s)	106, 331
LweI	GCATC	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	160, 695
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	6 cut(s)	192, 339, 606, 636, 653, 678
MluNI	TGGCCA	1 cut(s)	96
MnlI	CCTC	2 cut(s)	327, 532
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	74, 474, 547
NlaIV	GGNNCC	2 cut(s)	240, 450
NspI	RCATGY	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	121, 346
PshAI	GACNNNNGTC	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	240, 450
PspPI	GGNCC	3 cut(s)	239, 428, 448
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	4 cut(s)	17, 302, 533, 643
RsaNI	GTAC	4 cut(s)	16, 301, 532, 642
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	120, 345
Sau96I	GGNCC	3 cut(s)	239, 428, 448
ScaI	AGTACT	1 cut(s)	17
SetI	ASST	8 cut(s)	57, 121, 430, 447, 460, 481, 533, 676
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	3 cut(s)	239, 428, 448
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	192, 339, 606, 636, 653, 678
SseBI	AGGCCT	1 cut(s)	385
SspI	AATATT	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	230, 369
TasI	AATT	6 cut(s)	192, 339, 606, 636, 653, 678
TatI	WGTACW	2 cut(s)	15, 300
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	4 cut(s)	235, 405, 541, 574
TseI	GCWGC	2 cut(s)	119, 344
TspDTI	ATGAA	3 cut(s)	189, 450, 459
TspRI	CASTG	4 cut(s)	235, 405, 541, 574
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	239, 428, 448
XapI	RAATTY	3 cut(s)	192, 606, 653
XceI	RCATGY	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.