Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006507

Physical Location & Seq

Genomic Coordinates Forward (+)

35726701 .. 35731443

Gene Structure 4743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1224600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTGATAGCCAGTACTCATTTTCTCTTACGACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCGCTAACGGCAGTTGGATCTGGCCAGACGTCTTTAGGGATTAAAGCTGCTAATGGAGTTGTCATAGCAACGGAGAAGAAACTGCCATCTATCTTAGTTGATGAAACATCTGTTCAGAAAATTCAGTTATTGACGCCAAACATTGGAGTTGTTTACAGTGGCATGGGTCCAGATTTCAGAGTTCTGGTTCGGAAAAGTAGGAAACAGGCTGAGCAATATCATCAGTTGTATAAAGAACCTATCCCTGTTACACAACTAGTGAGGGAAGTTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGGGGTGTAAGGCCTTTTGGAGTTTCACTGCTGGTTGCCGGCTTTGATGACAAAGGTCCACAACTATTTCAGGTGGACCCATCTGGTTCTTACTTTTCTTGGAAAGCTTCTGCCATGGGGAAAAATGTGTCTAACGCAAAAACATTTCTTGAGAAAAGGTACACCGAGGACATGGAACTTGATGATGCTGTCCACACGGCAATATTGACCCTGAAAGAAGGGTTTGAAGGACAAATTTCTGGTAAAAACATTGAGATTGGGATAATTGGCGCTGACAAAAAATTCAGAGTACTCACACCAGCTGAAATTGAAGATTACTTGGCCGAGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

236

Amino Acids

25.64

Weight (kDa)

5.53

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	1.8e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	5.2e-59	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210
fragaria_vesca	FvH4_3g12361 FvH4_3g12361
malus_domestica	MD05G1224600.v1.1 MD10G1206300.v1.1
prunus_persica	Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1
pyrus_communis	pycom05g20720 pycom10g17610
rosa_chinensis	RchiOBHm_Chr5g0020171
rosa_multiflora	Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016
rosa_roxburghii	Rroxscaffold_1G00058040
rosa_samantha	Rh5BG147300 Rh5CG158700
rosa_wichuraiana	Rw5G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	215
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	2 cut(s)	94, 693
AcsI	RAATTY	3 cut(s)	192, 606, 653
AcyI	GRCGYC	2 cut(s)	101, 206
AfaI	GTAC	3 cut(s)	17, 533, 663
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	68, 599, 683
AhdI	GACNNNNNGTC	1 cut(s)	39
AhlI	ACTAGT	1 cut(s)	328
AluBI	AGCT	4 cut(s)	55, 119, 479, 674
AluI	AGCT	4 cut(s)	55, 119, 479, 674
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	3 cut(s)	94, 383, 693
ApeKI	GCWGC	2 cut(s)	119, 344
ApoI	RAATTY	3 cut(s)	192, 606, 653
AspLEI	GCGC	2 cut(s)	76, 644
AspS9I	GGNCC	3 cut(s)	239, 428, 448
AvaII	GGWCC	3 cut(s)	239, 428, 448
BalI	TGGCCA	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	106, 331
BccI	CCATC	2 cut(s)	166, 460
BceAI	ACGGC	2 cut(s)	96, 585
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	645
BisI	GCNGC	2 cut(s)	120, 345
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	2 cut(s)	121, 346
BmcAI	AGTACT	2 cut(s)	17, 663
Bme18I	GGWCC	3 cut(s)	239, 428, 448
BmeRI	GACNNNNNGTC	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	239, 428, 448
BmiI	GGNNCC	2 cut(s)	240, 450
BmsI	GCATC	1 cut(s)	547
BoxI	GACNNNNGTC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	2 cut(s)	101, 206
BsaJI	CCNNGG	3 cut(s)	486, 537, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	486, 537, 696
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	106, 331
BshFI	GGCC	3 cut(s)	96, 385, 695
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	3 cut(s)	96, 385, 695
Bsp143I	GATC	1 cut(s)	89
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	3 cut(s)	96, 385, 695
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	240, 450
BspPI	GGATC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	486, 537, 696
BssMI	GATC	1 cut(s)	89
BssNI	GRCGYC	2 cut(s)	101, 206
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	230, 369
BstACI	GRCGYC	2 cut(s)	101, 206
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	166, 282
BstDSI	CCRYGG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	76, 644
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	106, 331
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	3 cut(s)	96, 385, 695
BtgI	CCRYGG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	235, 398
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	2 cut(s)	76, 644
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	3 cut(s)	239, 428, 448
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	16, 532, 662
CviAII	CATG	4 cut(s)	71, 235, 487, 544
CviQI	GTAC	3 cut(s)	16, 532, 662
DdeI	CTNAG	2 cut(s)	166, 282
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	39
EaeI	YGGCCR	2 cut(s)	94, 693
Eam1105I	GACNNNNNGTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	239, 428, 448
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	74, 238, 490, 547
FaiI	YATR	7 cut(s)	72, 137, 236, 303, 353, 488, 545
FatI	CATG	4 cut(s)	70, 234, 486, 543
Fnu4HI	GCNGC	2 cut(s)	120, 345
Fsp4HI	GCNGC	2 cut(s)	120, 345
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	2 cut(s)	75, 643
GluI	GCNGC	2 cut(s)	120, 345
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	96, 385, 695
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	76, 644
Hin1I	GRCGYC	2 cut(s)	101, 206
Hin1II	CATG	4 cut(s)	74, 238, 490, 547
Hin6I	GCGC	2 cut(s)	74, 642
HinP1I	GCGC	2 cut(s)	74, 642
HindIII	AAGCTT	2 cut(s)	53, 477
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	6 cut(s)	226, 363, 431, 448, 534, 565
Hpy188I	TCNGA	5 cut(s)	63, 189, 251, 264, 659
Hpy188III	TCNNGA	2 cut(s)	242, 521
Hpy8I	GTNNAC	6 cut(s)	226, 363, 431, 448, 534, 565
HpyAV	CCTTC	3 cut(s)	54, 584, 593
HpyCH4III	ACNGT	2 cut(s)	230, 369
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	166, 282
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	2 cut(s)	101, 206
Hsp92II	CATG	4 cut(s)	74, 238, 490, 547
HspAI	GCGC	2 cut(s)	74, 642
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	89
Lsp1109I	GCAGC	2 cut(s)	106, 331
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	160, 695
MflI	RGATCY	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	5 cut(s)	192, 606, 636, 653, 678
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	327, 532, 691
Mox20I	TGGCCA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	1 cut(s)	89
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	4 cut(s)	74, 238, 490, 547
NlaIV	GGNNCC	2 cut(s)	240, 450
NspI	RCATGY	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	121, 346
PshAI	GACNNNNGTC	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	240, 450
PspPI	GGNCC	3 cut(s)	239, 428, 448
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	17, 533, 663
RsaNI	GTAC	3 cut(s)	16, 532, 662
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	120, 345
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	3 cut(s)	239, 428, 448
ScaI	AGTACT	2 cut(s)	17, 663
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	3 cut(s)	239, 428, 448
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	5 cut(s)	192, 606, 636, 653, 678
SseBI	AGGCCT	1 cut(s)	385
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	230, 369
TaiI	ACGT	1 cut(s)	104
TasI	AATT	5 cut(s)	192, 606, 636, 653, 678
TatI	WGTACW	2 cut(s)	15, 661
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	235, 405
TseI	GCWGC	2 cut(s)	119, 344
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	235, 405
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	239, 428, 448
XapI	RAATTY	3 cut(s)	192, 606, 653
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	329
ZraI	GACGTC	1 cut(s)	102
ZrmI	AGTACT	2 cut(s)	17, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.