Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002087.1

Orthogroup ID

OG0006507

Physical Location & Seq

Genomic Coordinates Forward (+)

72702 .. 74607

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002087.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgggcgacagtcagtactcgttttcgctcaccactttcagtccttcagggaagctggtgcagatcgagcacgctttgacagcagtcgggtcgggtcagacctctttggggatcaaggcttccaatggagttgttattgccaccgagaagaagctaccttcaatcttggttgatgaagcatctgttcaaaagatacagtgtttgacaccaaatattggagttgtttacagtggtatgggtcctgattttcgagttttggttcggaaaagcaggaagcaggcagtgcagtatcatcagttatataaggaaccaatccctgttactcaacttgtgagggaaactgctgctgtgatgcaagagtttactcaatctggtggtgtaaggccttttggagtatctcttctggttgctggttttgatgacagtggtccccaactatttcaggtacttcagctctgcaatattgattatcggttcatatttttcatggaaagcctctgcaatgggaaagaatgtctcaaatgcaaaaacttttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

179

Amino Acids

19.59

Weight (kDa)

8.6

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16470 AT1G16470 AT1G79210 AT1G79210 AT1G79210
fragaria_vesca	FvH4_3g12361 FvH4_3g12361
malus_domestica	MD05G1224600.v1.1 MD10G1206300.v1.1
prunus_persica	Prupe.4G112500_v2.0.a1 Prupe.4G112500_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1 Prupe.4G136000_v2.0.a1
pyrus_communis	pycom05g20720 pycom10g17610
rosa_chinensis	RchiOBHm_Chr5g0020171
rosa_multiflora	Rmu_co8147062.1_g000001 Rmu_sc0000116.1_g000003 Rmu_sc0002087.1_g000016
rosa_roxburghii	Rroxscaffold_1G00058040
rosa_samantha	Rh5BG147300 Rh5CG158700
rosa_wichuraiana	Rw5G013060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	30, 434
AfaI	GTAC	2 cut(s)	17, 447
AfiI	CCNNNNNNNGG	2 cut(s)	108, 215
AgsI	TTSAA	2 cut(s)	162, 188
AluBI	AGCT	3 cut(s)	55, 154, 454
AluI	AGCT	3 cut(s)	55, 154, 454
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	239, 428
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	239, 428
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BcoDI	GTCTC	1 cut(s)	521
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	239, 428
BmgT120I	GGNCC	2 cut(s)	239, 428
BmiI	GGNNCC	3 cut(s)	240, 309, 430
BmsI	GCATC	2 cut(s)	188, 342
BoxI	GACNNNNGTC	2 cut(s)	83, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 215
Bse3DI	GCAATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	108, 215
BseMI	GCAATG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	2 cut(s)	80, 305
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	108, 215
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	63, 111
BspANI	GGCC	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	240, 309, 430
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	508
BssMI	GATC	2 cut(s)	63, 111
Bst4CI	ACNGT	4 cut(s)	11, 198, 230, 425
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	72, 279
BstKTI	GATC	2 cut(s)	66, 114
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	63, 111
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
BstPAI	GACNNNNGTC	2 cut(s)	83, 426
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	4 cut(s)	203, 235, 288, 430
Cac8I	GCNNGC	2 cut(s)	72, 279
Cfr13I	GGNCC	2 cut(s)	239, 428
Csp6I	GTAC	2 cut(s)	16, 446
CviAII	CATG	1 cut(s)	487
CviJI	RGCY	6 cut(s)	55, 119, 154, 385, 454, 495
CviKI_1	RGCY	6 cut(s)	55, 119, 154, 385, 454, 495
CviQI	GTAC	2 cut(s)	16, 446
DpnI	GATC	2 cut(s)	65, 113
DpnII	GATC	2 cut(s)	63, 111
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	239, 428
Eco57I	CTGAAG	2 cut(s)	30, 434
EcoO109I	RGGNCCY	1 cut(s)	239
FaeI	CATG	1 cut(s)	490
FaiI	YATR	5 cut(s)	236, 301, 303, 479, 488
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	490
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	226, 363
Hpy188I	TCNGA	2 cut(s)	99, 264
Hpy188III	TCNNGA	2 cut(s)	242, 537
Hpy8I	GTNNAC	2 cut(s)	226, 363
HpyAV	CCTTC	2 cut(s)	54, 168
HpyCH4III	ACNGT	4 cut(s)	11, 198, 230, 425
HpyCH4V	TGCA	6 cut(s)	61, 286, 355, 459, 501, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
Hsp92II	CATG	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	63, 111
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	188, 342
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	65, 113
MboI	GATC	2 cut(s)	63, 111
MboII	GAAGA	2 cut(s)	160, 392
MhlI	GDGCHC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	112, 327, 506
MwoI	GCNNNNNNNGC	3 cut(s)	67, 80, 283
NdeII	GATC	2 cut(s)	63, 111
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	3 cut(s)	240, 309, 430
PceI	AGGCCT	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	2 cut(s)	83, 426
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	240, 309, 430
PspPI	GGNCC	2 cut(s)	239, 428
PspPPI	RGGWCCY	1 cut(s)	239
RsaI	GTAC	2 cut(s)	17, 447
RsaNI	GTAC	2 cut(s)	16, 446
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	63, 111
Sau96I	GGNCC	2 cut(s)	239, 428
ScaI	AGTACT	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	57, 104, 156, 160, 447, 456
SfaNI	GCATC	2 cut(s)	188, 342
SinI	GGWCC	2 cut(s)	239, 428
SseBI	AGGCCT	1 cut(s)	385
SspI	AATATT	2 cut(s)	214, 463
StuI	AGGCCT	1 cut(s)	385
TaaI	ACNGT	4 cut(s)	11, 198, 230, 425
TaqI	TCGA	2 cut(s)	66, 250
TatI	WGTACW	1 cut(s)	15
TscAI	CASTG	4 cut(s)	203, 235, 288, 430
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	189, 466, 475
TspRI	CASTG	4 cut(s)	203, 235, 288, 430
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	239, 428
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.