AT1G16570

Glycosyl transferase 4-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008696
Physical Location & Seq
Reverse (-)
5670577 .. 5673600
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16570.1

Sequence Viewer

Length: 1398 bp
ATGGGGAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCTCGGATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTGGACATTGTTGCATATGGAGGTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCATACCATGGCGCAGCCTCGATTCATTCAGTACTTTCCAAAGATACTTTATCCTGTAACTCTCTTGCTCAAGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACCAGCGCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAAGTGGGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACGTTGTTGGCATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGAGAATCATTATGGAAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGAACTGGATCAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCGTCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTGCCATCCAATTGGTGTCTATGATTTCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGAAACCCTTTTTACTACCAAATTTAATGCTGACATCTCGCTGAAGCAAAACAGACCAGCTCTTGTTGTGAGTAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTGCAGTGATGTATGATCGGCGTGTGGCTGCAAGATCAAAAGGAAGTGAAACAGCTGAAATTTCAGAAGAGCAACACCATTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGGAGATGTACGAGGAGAAAATCAAACGATTAAACCTTAGACATGTGGCATTCCGTACAATGTGGCTCGCAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTACACACTTCCTCGTCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCCTCCCAGTTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAACGGACTTTTGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTGATTCTCTTCAAGGGTTTTCCAGGGAACTGTGATGCACTAATGTCGCTTAAAGCGGGTGCAATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTTAATCACTCAGGTCGTGTCTCAAATTGCAGATTCATGA

Protein Analysis

465

Amino Acids

52.32

Weight (kDa)

6.92

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 31 - 188 1e-06 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 31 - 189 3.3e-06 Glycosyltransferase Family 4
Glyco_trans_1_4 PF13692 301 - 416 1.9e-11 Glycosyl transferases group 1
Glycos_transf_1 PF00534 302 - 413 1e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AciI CCGC 3 cut(s) 466, 603, 1295
AclWI GGATC 2 cut(s) 549, 657
AcsI RAATTY 3 cut(s) 734, 811, 891
AcuI CTGAAG 2 cut(s) 776, 1050
AfaI GTAC 6 cut(s) 33, 206, 294, 790, 965, 1012
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 997
AgsI TTSAA 4 cut(s) 104, 614, 1172, 1252
AjiI CACGTC 1 cut(s) 377
AjnI CCWGG 1 cut(s) 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 7 cut(s) 146, 709, 773, 795, 833, 887, 1028
AluI AGCT 7 cut(s) 146, 709, 773, 795, 833, 887, 1028
Alw26I GTCTC 3 cut(s) 367, 1301, 1383
AlwI GGATC 2 cut(s) 549, 657
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 1135
ApeKI GCWGC 5 cut(s) 187, 380, 833, 860, 1025
ApoI RAATTY 3 cut(s) 734, 811, 891
ArsI GACNNNNNNTTYG 2 cut(s) 1300, 1332
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 2 cut(s) 187, 301
AspS9I GGNCC 3 cut(s) 316, 798, 947
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 3 cut(s) 316, 798, 947
BbvI GCAGC 5 cut(s) 199, 392, 820, 847, 1037
BccI CCATC 5 cut(s) 169, 487, 666, 1181, 1320
BcgI CGANNNNNNTGC 4 cut(s) 486, 520, 1266, 1300
BciT130I CCWGG 1 cut(s) 1263
BciVI GTATCC 2 cut(s) 466, 830
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 367, 1301, 1383
BfmI CTRYAG 3 cut(s) 834, 1056, 1332
BfoI RGCGCY 1 cut(s) 302
BfuI GTATCC 2 cut(s) 466, 830
BglII AGATCT 2 cut(s) 40, 1060
BisI GCNGC 5 cut(s) 188, 381, 834, 861, 1026
BlsI GCNGC 5 cut(s) 189, 382, 835, 862, 1027
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 1263
Bme18I GGWCC 3 cut(s) 316, 798, 947
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 316, 798, 947
BmiI GGNNCC 1 cut(s) 800
BmrFI CCNGG 1 cut(s) 1263
BmrI ACTGGG 1 cut(s) 1136
BmsI GCATC 3 cut(s) 51, 104, 1264
BmuI ACTGGG 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 56, 180, 1262
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 4 cut(s) 543, 831, 1142, 1315
Bse3DI GCAATG 3 cut(s) 531, 1040, 1308
BseBI CCWGG 1 cut(s) 1263
BseDI CCNNGG 3 cut(s) 56, 180, 1262
BseGI GGATG 4 cut(s) 66, 171, 658, 1136
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 3 cut(s) 531, 1040, 1308
BseMII CTCAG 3 cut(s) 465, 579, 1382
BseNI ACTGG 4 cut(s) 543, 831, 1142, 1315
BseRI GAGGAG 1 cut(s) 983
BseXI GCAGC 5 cut(s) 199, 392, 820, 847, 1037
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 1 cut(s) 1137
BslFI GGGAC 2 cut(s) 320, 585
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 3 cut(s) 367, 1301, 1383
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 320, 585
BsmI GAATGC 2 cut(s) 1004, 1167
BsnI GGCC 1 cut(s) 1137
Bsp143I GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 3 cut(s) 466, 603, 1295
BspANI GGCC 1 cut(s) 1137
BspCNI CTCAG 3 cut(s) 466, 580, 1381
BspHI TCATGA 1 cut(s) 1394
BspLI GGNNCC 1 cut(s) 800
BspMAI CTGCAG 2 cut(s) 838, 1060
BspPI GGATC 2 cut(s) 549, 657
BspQI GCTCTTC 1 cut(s) 894
BsrDI GCAATG 3 cut(s) 531, 1040, 1308
BsrI ACTGG 4 cut(s) 543, 831, 1142, 1315
BssECI CCNNGG 3 cut(s) 56, 180, 1262
BssMI GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 1263
Bst4CI ACNGT 1 cut(s) 1271
Bst6I CTCTTC 2 cut(s) 894, 1253
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 4 cut(s) 474, 588, 992, 1368
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 66, 171, 658, 1136
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 187, 301
BstKTI GATC 8 cut(s) 43, 544, 580, 652, 850, 869, 1063, 1234
BstMAI GTCTC 3 cut(s) 367, 1301, 1383
BstMBI GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 1263
BstNSI RCATGY 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 1261
BstSFI CTRYAG 3 cut(s) 834, 1056, 1332
BstV1I GCAGC 5 cut(s) 199, 392, 820, 847, 1037
BstX2I RGATCY 3 cut(s) 40, 649, 1060
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 3 cut(s) 40, 649, 1060
BsuI GTATCC 2 cut(s) 466, 830
BsuRI GGCC 1 cut(s) 1137
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 4 cut(s) 66, 171, 658, 1136
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 1023
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 1394
CfoI GCGC 2 cut(s) 187, 301
Cfr13I GGNCC 3 cut(s) 316, 798, 947
Csp6I GTAC 6 cut(s) 32, 205, 293, 789, 964, 1011
CviAII CATG 9 cut(s) 140, 181, 369, 533, 623, 998, 1108, 1164, 1395
CviQI GTAC 6 cut(s) 32, 205, 293, 789, 964, 1011
DdeI CTNAG 4 cut(s) 474, 588, 992, 1368
DpnI GATC 8 cut(s) 42, 543, 579, 651, 849, 868, 1062, 1233
DpnII GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
Eam1104I CTCTTC 2 cut(s) 894, 1253
EarI CTCTTC 2 cut(s) 894, 1253
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 3 cut(s) 316, 798, 947
Eco57I CTGAAG 2 cut(s) 776, 1050
EcoO109I RGGNCCY 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 1261
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 1169
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 9 cut(s) 143, 184, 372, 536, 626, 1001, 1111, 1167, 1398
FaqI GGGAC 2 cut(s) 320, 585
FatI CATG 9 cut(s) 139, 180, 368, 532, 622, 997, 1107, 1163, 1394
FauI CCCGC 2 cut(s) 610, 1288
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 577
Fnu4HI GCNGC 5 cut(s) 188, 381, 834, 861, 1026
FokI GGATG 4 cut(s) 73, 158, 645, 1143
Fsp4HI GCNGC 5 cut(s) 188, 381, 834, 861, 1026
GlaI GCGC 2 cut(s) 186, 300
GluI GCNGC 5 cut(s) 188, 381, 834, 861, 1026
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 1 cut(s) 1137
HhaI GCGC 2 cut(s) 187, 301
Hin1II CATG 9 cut(s) 143, 184, 372, 536, 626, 1001, 1111, 1167, 1398
Hin6I GCGC 2 cut(s) 185, 299
HinP1I GCGC 2 cut(s) 185, 299
HinfI GANTC 5 cut(s) 195, 322, 478, 1243, 1391
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 109, 261
Hpy188I TCNGA 5 cut(s) 60, 475, 546, 898, 1222
Hpy188III TCNNGA 4 cut(s) 319, 587, 1172, 1395
Hpy8I GTNNAC 2 cut(s) 109, 261
Hpy99I CGWCG 1 cut(s) 1093
HpyAV CCTTC 5 cut(s) 9, 339, 640, 1105, 1112
HpyCH4III ACNGT 1 cut(s) 1271
HpyCH4IV ACGT 2 cut(s) 376, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 4 cut(s) 474, 588, 992, 1368
HpySE526I ACGT 2 cut(s) 376, 416
Hsp92II CATG 9 cut(s) 143, 184, 372, 536, 626, 1001, 1111, 1167, 1398
HspAI GCGC 2 cut(s) 185, 299
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
LguI GCTCTTC 1 cut(s) 894
Lsp1109I GCAGC 5 cut(s) 199, 392, 820, 847, 1037
LweI GCATC 3 cut(s) 51, 104, 1264
MaeII ACGT 2 cut(s) 376, 416
MaeIII GTNAC 2 cut(s) 229, 514
MalI GATC 8 cut(s) 42, 543, 579, 651, 849, 868, 1062, 1233
MboI GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
MboII GAAGA 9 cut(s) 450, 626, 911, 1043, 1204, 1206, 1240, 1308, 1355
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 3 cut(s) 40, 649, 1060
MmeI TCCRAC 1 cut(s) 675
Mph1103I ATGCAT 1 cut(s) 1169
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 8 cut(s) 288, 354, 711, 738, 986, 1182, 1290, 1361
MspA1I CMGCKG 3 cut(s) 468, 887, 1028
MspR9I CCNGG 1 cut(s) 1263
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 2 cut(s) 1004, 1167
MvaI CCWGG 1 cut(s) 1263
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 121
NdeII GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
NlaIII CATG 9 cut(s) 143, 184, 372, 536, 626, 1001, 1111, 1167, 1398
NlaIV GGNNCC 1 cut(s) 800
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 1 cut(s) 514
NsiI ATGCAT 1 cut(s) 1169
NspI RCATGY 1 cut(s) 1001
PagI TCATGA 1 cut(s) 1394
PciI ACATGT 1 cut(s) 997
PciSI GCTCTTC 1 cut(s) 894
PctI GAATGC 2 cut(s) 1004, 1167
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 5 cut(s) 195, 322, 478, 1243, 1391
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 5 cut(s) 189, 382, 835, 862, 1027
PpuMI RGGWCCY 1 cut(s) 947
PscI ACATGT 1 cut(s) 997
Psp5II RGGWCCY 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 1261
PspGI CCWGG 1 cut(s) 1261
PspN4I GGNNCC 1 cut(s) 800
PspPI GGNCC 3 cut(s) 316, 798, 947
PspPPI RGGWCCY 1 cut(s) 947
PstI CTGCAG 2 cut(s) 838, 1060
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 3 cut(s) 40, 649, 1060
PvuII CAGCTG 2 cut(s) 887, 1028
RsaI GTAC 6 cut(s) 33, 206, 294, 790, 965, 1012
RsaNI GTAC 6 cut(s) 32, 205, 293, 789, 964, 1011
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 8 cut(s) 288, 354, 711, 738, 986, 1182, 1290, 1361
SatI GCNGC 5 cut(s) 188, 381, 834, 861, 1026
Sau3AI GATC 8 cut(s) 40, 541, 577, 649, 847, 866, 1060, 1231
Sau96I GGNCC 3 cut(s) 316, 798, 947
ScaI AGTACT 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 1263
SfaNI GCATC 3 cut(s) 51, 104, 1264
SfcI CTRYAG 3 cut(s) 834, 1056, 1332
SinI GGWCC 3 cut(s) 316, 798, 947
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 3 cut(s) 466, 603, 1295
StyD4I CCNGG 1 cut(s) 1261
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 1271
TaiI ACGT 2 cut(s) 379, 419
TaqI TCGA 3 cut(s) 49, 193, 1324
TatI WGTACW 2 cut(s) 204, 788
TfiI GAWTC 5 cut(s) 195, 322, 478, 1243, 1391
Tru1I TTAA 8 cut(s) 288, 354, 711, 738, 986, 1182, 1290, 1361
Tru9I TTAA 8 cut(s) 288, 354, 711, 738, 986, 1182, 1290, 1361
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 5 cut(s) 187, 380, 833, 860, 1025
Tsp45I GTSAC 1 cut(s) 514
TspGWI ACGGA 4 cut(s) 322, 587, 998, 1212
TspRI CASTG 1 cut(s) 843
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 316, 798, 947
XapI RAATTY 3 cut(s) 734, 811, 891
XceI RCATGY 1 cut(s) 1001
XmnI GAANNNNTTC 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.