MD05G1209100.v1.1

Glycosyl transferases group 1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
34084635 .. 34088847
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1209100.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGACTTCAACTGCAAGTCTGCACCTTTGGCAGTTGGCACCACTCTCTCCGTCGGAGATCAGAATCCAAGCGGAACAGAGAACCATGGCCGGCAAAGGCAAGCTTTTTCGTTCTTTCTTTTTTCTCGAAAGCTCGTTTCTTTGCAGATTTCTGAGGAGTTTGGGATTTCTGATTGCAGGAGGGAAGAGAGGGCGGGCGTGCGTGGTGGTGCTGGGCGATATTGGGCGGAGCCCCCGTATGCAGTATCACGCTCTTTCGCTTGCCCGACAGGCTTCTCTGGAGGTAGATATTGTTGCATATGGAGGTTCCGAACCCCATTCCGCTCTACTTGAACATCAGTCCATTCACATACACAAAATGCAGCAGTGGCAGACATTTACGCGTGGCCTGCCCAACATACTTAGACCCTTCGTGCTTTTGATCAAGGCAGTGACTCAGTTTATAATGCTTCTTTGGTTTCTTTGCATTAAGATACCTGCTCCCGATGTTTATCTAGTTCAGAATCCACCCTCTGTTCCAACCTTAATGGCTGTAAAATGGGCAAGCTGGCTTAGGAAATCTGCCTTTATTGTTGACTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTAGATTTGTGGCAATATACCGTTGGTTTGAGAGGTATTTCGGGAAGATGGCAGATGGTTCCCTATGTGTAACGAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCCACAGTTTTATATGATCAGCCTCCTGAGTTTTTCCGACCTGCTTCACTTGAAGAAAAGCATAAGTTGTTCTGCAGATTAGATAAAAATCTAAGGCAGCCACTTGGTGTTCATGATTGCACTAGCACTGGATCAGGGGAAGTGAATACAGACATAAACGATACTCTATTTACCTCTCTGGTTGGTACTGACGTTACTTTGAAGCCACACAGGCCAGCACTCATAGTTAGCAGTACAAGCTGGACTCCTGACGAAGATTTTGAAATTCTCTTGGAAGCAGCTGTCATGTATGACAGGCGTGTTGCTGCTATTTTAAATGAAGAAGATTCTACTAAAGAAGAGGTTCTTTGGAAGGATATTCATAGTGGGAAGCAATACTTATACCCTAGGCTGTTATTTGTCATTACTGGTAAAGGGCCCGAAAAGCAAAAATATGAAGAAAAAATTAGCAGATTACACCTCAAACGCGTGGCATTTCGTACTATGTGGTTGTCTGCTGAGGACTATCCATTGCTTCTTGGATCAGCGGATCTTGGTGTATGCTTGCATACGTCCTCATCAGGGTTGGATCTTCCCATGAAGGTCGTGGACATGTTTGGCTGTGGACTGCCAGTTTGTGCTGTTTCCTACTCATGCATCAAGGAACTAGTGCAAGTTGAGAAAAACGGCCTTCTGTTTTCATCGTCTTCAGAACTAGCGGATGAACTTTTGATGCTGTTCAAGGGTTTTCCAGAGGCATGTGGTTCCTTGAAGGTTCTCAGGAACGGTGCATTGGAAATGGCTTCATCTGGGAGGTGGGCTACTGAGTGGGAAGAGCATGCCAAAGCATTAATACTAGAGGTTATCTCTAAAAACTCAGATTGA

Protein Analysis

535

Amino Acids

60.17

Weight (kDa)

8.38

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 90 - 248 2.5e-10 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 91 - 248 5.4e-07 Glycosyltransferase Family 4
Glycos_transf_1 PF00534 374 - 483 3.3e-09 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 378 - 487 5.1e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
Acc36I ACCTGC 2 cut(s) 484, 790
AccB1I GGYRCC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 323
AccII CGCG 2 cut(s) 382, 1209
AciI CCGC 6 cut(s) 71, 193, 226, 321, 1268, 1439
AclWI GGATC 4 cut(s) 880, 1270, 1278, 1317
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 1005
AcuI CTGAAG 1 cut(s) 1413
AdeI CACNNNGTG 1 cut(s) 848
AfaI GTAC 3 cut(s) 928, 976, 1222
AfiI CCNNNNNNNGG 1 cut(s) 1302
AflIII ACRYGT 3 cut(s) 380, 1207, 1332
AgsI TTSAA 7 cut(s) 9, 332, 794, 943, 1004, 1462, 1492
AhlI ACTAGT 1 cut(s) 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1496, 1528
AluBI AGCT 5 cut(s) 103, 132, 546, 981, 1022
AluI AGCT 5 cut(s) 103, 132, 546, 981, 1022
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 4 cut(s) 880, 1270, 1278, 1317
AoxI GGCC 5 cut(s) 87, 385, 953, 1157, 1408
ApaI GGGCCC 1 cut(s) 1161
ApeKI GCWGC 4 cut(s) 361, 838, 1019, 1046
ApoI RAATTY 1 cut(s) 1005
ArsI GACNNNNNNTTYG 4 cut(s) 983, 1015, 1338, 1370
AseI ATTAAT 1 cut(s) 1571
Asp700I GAANNNNTTC 1 cut(s) 1083
AspA2I CCTAGG 1 cut(s) 1127
AspS9I GGNCC 2 cut(s) 1157, 1158
AvrII CCTAGG 1 cut(s) 1127
BaeGI GKGCMC 1 cut(s) 1161
BaeI ACNNNNGTAYC 2 cut(s) 918, 951
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 233, 1161
BbsI GAAGAC 1 cut(s) 1419
BbvCI CCTCAGC 1 cut(s) 1239
BbvI GCAGC 4 cut(s) 373, 850, 1031, 1033
BccI CCATC 2 cut(s) 667, 674
BceAI ACGGC 1 cut(s) 1423
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BclI TGATCA 2 cut(s) 420, 757
BcoDI GTCTC 1 cut(s) 615
BcuI ACTAGT 1 cut(s) 1387
BfaI CTAG 6 cut(s) 494, 864, 1128, 1388, 1436, 1577
BfmI CTRYAG 1 cut(s) 814
BfuAI ACCTGC 2 cut(s) 484, 790
BglI GCCNNNNNGGC 2 cut(s) 269, 952
BisI GCNGC 4 cut(s) 362, 839, 1020, 1047
BlnI CCTAGG 1 cut(s) 1127
BlsI GCNGC 4 cut(s) 363, 840, 1021, 1048
BmgT120I GGNCC 2 cut(s) 1157, 1158
BmiI GGNNCC 6 cut(s) 39, 230, 307, 685, 1159, 1486
BmsI GCATC 2 cut(s) 1386, 1443
BpiI GAAGAC 1 cut(s) 1419
BplI GAGNNNNNCTC 2 cut(s) 1571, 1603
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 2 cut(s) 551, 1239
BsaBI GATNNNNATC 3 cut(s) 62, 489, 828
BsaJI CCNNGG 2 cut(s) 84, 1127
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 1302
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 5 cut(s) 581, 606, 874, 1153, 1352
Bse3DI GCAATG 2 cut(s) 711, 1250
Bse8I GATNNNNATC 3 cut(s) 62, 489, 828
BseDI CCNNGG 2 cut(s) 84, 1127
BseGI GGATG 1 cut(s) 1447
BseJI GATNNNNATC 3 cut(s) 62, 489, 828
BseLI CCNNNNNNNGG 1 cut(s) 1302
BseMI GCAATG 2 cut(s) 711, 1250
BseMII CTCAG 6 cut(s) 143, 449, 759, 1230, 1513, 1536
BseNI ACTGG 5 cut(s) 581, 606, 874, 1153, 1352
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 1161
BseXI GCAGC 4 cut(s) 373, 850, 1031, 1033
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 5
Bsh1236I CGCG 2 cut(s) 382, 1209
BshFI GGCC 5 cut(s) 89, 387, 955, 1159, 1410
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 1302
BsmAI GTCTC 1 cut(s) 615
BsnI GGCC 5 cut(s) 89, 387, 955, 1159, 1410
Bsp120I GGGCCC 1 cut(s) 1157
Bsp1286I GDGCHC 2 cut(s) 233, 1161
Bsp143I GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 6 cut(s) 71, 193, 226, 321, 1268, 1439
BspANI GGCC 5 cut(s) 89, 387, 955, 1159, 1410
BspCNI CTCAG 6 cut(s) 144, 448, 760, 1231, 1512, 1537
BspFNI CGCG 2 cut(s) 382, 1209
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 6 cut(s) 39, 230, 307, 685, 1159, 1486
BspMAI CTGCAG 1 cut(s) 818
BspMI ACCTGC 2 cut(s) 484, 790
BspPI GGATC 4 cut(s) 880, 1270, 1278, 1317
BspQI GCTCTTC 1 cut(s) 1548
BspT107I GGYRCC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 711, 1250
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 5 cut(s) 581, 606, 874, 1153, 1352
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 84, 1127
BssMI GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
BssT1I CCWWGG 2 cut(s) 84, 1127
Bst4CI ACNGT 3 cut(s) 647, 748, 1508
Bst6I CTCTTC 3 cut(s) 179, 1074, 1548
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 1447
BstFNI CGCG 2 cut(s) 382, 1209
BstKTI GATC 7 cut(s) 60, 423, 760, 875, 1265, 1273, 1312
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
BstMWI GCNNNNNNNGC 7 cut(s) 28, 269, 367, 388, 952, 978, 1165
BstNSI RCATGY 3 cut(s) 1336, 1482, 1562
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 1161
BstUI CGCG 2 cut(s) 382, 1209
BstV1I GCAGC 4 cut(s) 373, 850, 1031, 1033
BstV2I GAAGAC 1 cut(s) 1419
BstX2I RGATCY 2 cut(s) 1270, 1309
BstYI RGATCY 2 cut(s) 1270, 1309
BsuRI GGCC 5 cut(s) 89, 387, 955, 1159, 1410
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 1447
BtsI GCAGTG 2 cut(s) 371, 435
BtsIMutI CAGTG 3 cut(s) 371, 435, 867
BveI ACCTGC 2 cut(s) 484, 790
CciI TCATGA 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 1157, 1158
Csp6I GTAC 3 cut(s) 927, 975, 1221
CviAII CATG 9 cut(s) 85, 713, 854, 1027, 1318, 1333, 1374, 1479, 1559
CviQI GTAC 3 cut(s) 927, 975, 1221
DpnI GATC 7 cut(s) 59, 422, 759, 874, 1264, 1272, 1311
DpnII GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
DraI TTTAAA 1 cut(s) 1056
DraIII CACNNNGTG 1 cut(s) 848
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 179, 1074, 1548
EarI CTCTTC 3 cut(s) 179, 1074, 1548
EciI GGCGGA 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 84, 1127
Eco24I GRGCYC 2 cut(s) 233, 1161
Eco57I CTGAAG 1 cut(s) 1413
EcoO109I RGGNCCY 1 cut(s) 1157
EcoT14I CCWWGG 2 cut(s) 84, 1127
EcoT22I ATGCAT 1 cut(s) 1379
EcoT38I GRGCYC 2 cut(s) 233, 1161
ErhI CCWWGG 2 cut(s) 84, 1127
FaeI CATG 9 cut(s) 88, 716, 857, 1030, 1321, 1336, 1377, 1482, 1562
FalI AAGNNNNNCTT 6 cut(s) 87, 119, 1071, 1103, 1103, 1135
FatI CATG 9 cut(s) 84, 712, 853, 1026, 1317, 1332, 1373, 1478, 1558
FauI CCCGC 1 cut(s) 186
FauNDI CATATG 1 cut(s) 298
FbaI TGATCA 2 cut(s) 420, 757
Fnu4HI GCNGC 4 cut(s) 362, 839, 1020, 1047
FokI GGATG 1 cut(s) 1454
FriOI GRGCYC 2 cut(s) 233, 1161
Fsp4HI GCNGC 4 cut(s) 362, 839, 1020, 1047
FspBI CTAG 6 cut(s) 494, 864, 1128, 1388, 1436, 1577
GluI GCNGC 4 cut(s) 362, 839, 1020, 1047
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 5 cut(s) 89, 387, 955, 1159, 1410
HapII CCGG 1 cut(s) 90
Hin1II CATG 9 cut(s) 88, 716, 857, 1030, 1321, 1336, 1377, 1482, 1562
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 5 cut(s) 63, 433, 502, 985, 1067
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 3 cut(s) 574, 1330, 1346
Hpy188I TCNGA 9 cut(s) 55, 62, 153, 171, 310, 501, 779, 1432, 1600
Hpy188III TCNNGA 9 cut(s) 125, 278, 482, 667, 767, 854, 989, 1472, 1501
Hpy8I GTNNAC 3 cut(s) 574, 1330, 1346
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 418, 1087, 1315, 1421, 1486
HpyCH4III ACNGT 3 cut(s) 647, 748, 1508
HpyCH4IV ACGT 2 cut(s) 933, 1292
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 269, 367, 388, 952, 978, 1165
HpySE526I ACGT 2 cut(s) 933, 1292
Hsp92II CATG 9 cut(s) 88, 716, 857, 1030, 1321, 1336, 1377, 1482, 1562
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 2 cut(s) 420, 757
Kzo9I GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
LguI GCTCTTC 1 cut(s) 1548
LmnI GCTCC 2 cut(s) 228, 484
Lsp1109I GCAGC 4 cut(s) 373, 850, 1031, 1033
LweI GCATC 2 cut(s) 1386, 1443
MaeI CTAG 6 cut(s) 494, 864, 1128, 1388, 1436, 1577
MaeII ACGT 2 cut(s) 933, 1292
MaeIII GTNAC 3 cut(s) 430, 694, 934
MalI GATC 7 cut(s) 59, 422, 759, 874, 1264, 1272, 1311
MbiI CCGCTC 1 cut(s) 323
MboI GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
MflI RGATCY 2 cut(s) 1270, 1309
MhlI GDGCHC 2 cut(s) 233, 1161
MluCI AATT 6 cut(s) 583, 716, 727, 735, 1005, 1185
MluI ACGCGT 2 cut(s) 380, 1207
MlyI GAGTC 2 cut(s) 427, 979
MmeI TCCRAC 4 cut(s) 33, 542, 802, 1287
Mph1103I ATGCAT 1 cut(s) 1379
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 1083
MseI TTAA 5 cut(s) 468, 524, 738, 1055, 1571
MspA1I CMGCKG 2 cut(s) 1022, 1268
MspI CCGG 1 cut(s) 90
MvnI CGCG 2 cut(s) 382, 1209
MwoI GCNNNNNNNGC 7 cut(s) 28, 269, 367, 388, 952, 978, 1165
NaeI GCCGGC 1 cut(s) 91
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 298
NdeII GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 9 cut(s) 88, 716, 857, 1030, 1321, 1336, 1377, 1482, 1562
NlaIV GGNNCC 6 cut(s) 39, 230, 307, 685, 1159, 1486
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 1379
NspI RCATGY 3 cut(s) 1336, 1482, 1562
PaeI GCATGC 1 cut(s) 1562
PagI TCATGA 1 cut(s) 853
PciI ACATGT 1 cut(s) 1332
PciSI GCTCTTC 1 cut(s) 1548
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 1083
PfeI GAWTC 3 cut(s) 63, 502, 1067
PkrI GCNGC 4 cut(s) 363, 840, 1021, 1048
PleI GAGTC 2 cut(s) 427, 979
PpsI GAGTC 2 cut(s) 427, 979
PscI ACATGT 1 cut(s) 1332
PshBI ATTAAT 1 cut(s) 1571
PsiI TTATAA 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 211
PspN4I GGNNCC 6 cut(s) 39, 230, 307, 685, 1159, 1486
PspOMI GGGCCC 1 cut(s) 1157
PspPI GGNCC 2 cut(s) 1157, 1158
PstI CTGCAG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 1270, 1309
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 3 cut(s) 928, 976, 1222
RsaNI GTAC 3 cut(s) 927, 975, 1221
SapI GCTCTTC 1 cut(s) 1548
SaqAI TTAA 5 cut(s) 468, 524, 738, 1055, 1571
SatI GCNGC 4 cut(s) 362, 839, 1020, 1047
Sau3AI GATC 7 cut(s) 57, 420, 757, 872, 1262, 1270, 1309
Sau96I GGNCC 2 cut(s) 1157, 1158
SchI GAGTC 2 cut(s) 427, 979
SduI GDGCHC 2 cut(s) 233, 1161
SfaNI GCATC 2 cut(s) 1386, 1443
SfcI CTRYAG 1 cut(s) 814
SpeI ACTAGT 1 cut(s) 1387
SphI GCATGC 1 cut(s) 1562
Sse9I AATT 6 cut(s) 583, 716, 727, 735, 1005, 1185
SsiI CCGC 6 cut(s) 71, 193, 226, 321, 1268, 1439
SspMI CTAG 6 cut(s) 494, 864, 1128, 1388, 1436, 1577
StyI CCWWGG 2 cut(s) 84, 1127
TaaI ACNGT 3 cut(s) 647, 748, 1508
TaiI ACGT 2 cut(s) 936, 1295
TaqI TCGA 1 cut(s) 126
TasI AATT 6 cut(s) 583, 716, 727, 735, 1005, 1185
TatI WGTACW 1 cut(s) 974
TfiI GAWTC 3 cut(s) 63, 502, 1067
Tru1I TTAA 5 cut(s) 468, 524, 738, 1055, 1571
Tru9I TTAA 5 cut(s) 468, 524, 738, 1055, 1571
TscAI CASTG 3 cut(s) 371, 435, 874
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 4 cut(s) 361, 838, 1019, 1046
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 9 cut(s) 729, 842, 1074, 1091, 1191, 1334, 1410, 1458, 1515
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 3 cut(s) 371, 435, 874
VspI ATTAAT 1 cut(s) 1571
XapI RAATTY 1 cut(s) 1005
XceI RCATGY 3 cut(s) 1336, 1482, 1562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1324
XmaJI CCTAGG 1 cut(s) 1127
XmnI GAANNNNTTC 1 cut(s) 1083
XspI CTAG 6 cut(s) 494, 864, 1128, 1388, 1436, 1577
Zsp2I ATGCAT 1 cut(s) 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.