Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008696

Physical Location & Seq

Genomic Coordinates Reverse (-)

8838955 .. 8839291

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGCTGCATATGCAGGATAACGTGTTGCGGAAGGGAATTAACCCTAGGACTCGGGCTCAGCAGCTTCAGGATCTCTTGCAGTATGTATACTCTCTTTCTGATAATCTCTCTGTGTTTCGATGGGGATGTTCCTCGCCGGAAAGAGATGAGAAAGAGAGAGAGAGAGATCGGTCAGCAGCTGCAGAGAGAGATAGAGGAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0048856 GO:0048868 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_trans_4_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

69

Amino Acids

8.07

Weight (kDa)

8.91

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16570 AT1G16570
fragaria_vesca	FvH4_3g16570 FvH4_3g16570 FvH4_3g16570 FvH4_3g16570
malus_domestica	MD05G1209100.v1.1 MD10G1195500.v1.1
prunus_persica	Prupe.4G148400_v2.0.a1 Prupe.4G148400_v2.0.a1 Prupe.4G148400_v2.0.a1
pyrus_communis	pycom10g16920
rosa_chinensis	RchiOBHm_Chr5g0027601
rosa_laevigata	RLG00000033032
rosa_multiflora	Rmu_sc0001647.1_g000009
rosa_roxburghii	Rroxscaffold_1G00051930
rosa_rugosa	Rorug05G0100000 Rorug05G0100100
rosa_samantha	Rh5AG194400 Rh5BG192500 Rh5CG212500 Rh5DG194200
rosa_wichuraiana	Rw5G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	23
AluBI	AGCT	2 cut(s)	66, 181
AluI	AGCT	2 cut(s)	66, 181
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	6, 63, 178, 181
AspA2I	CCTAGG	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	53
AvrII	CCTAGG	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	75, 168, 190
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	7, 64, 179, 182
BlnI	CCTAGG	1 cut(s)	46
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	4 cut(s)	8, 65, 180, 183
BmeT110I	CYCGRG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	75, 168, 190
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	72, 168
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	72, 168
BssNAI	GTATAC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	46
Bst1107I	GTATAC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	2 cut(s)	75, 171
BstMBI	GATC	2 cut(s)	72, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	75, 168, 190
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BstZ17I	GTATAC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	181
CviJI	RGCY	4 cut(s)	6, 58, 66, 181
CviKI_1	RGCY	4 cut(s)	6, 58, 66, 181
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	74, 170
DpnII	GATC	2 cut(s)	72, 168
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	46
FaiI	YATR	4 cut(s)	11, 13, 86, 90
FauNDI	CATATG	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	4 cut(s)	7, 64, 179, 182
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	4 cut(s)	7, 64, 179, 182
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	4 cut(s)	7, 64, 179, 182
HapII	CCGG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	9, 15, 81, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	72, 168
LpnPI	CCDG	2 cut(s)	55, 152
Lsp1109I	GCAGC	3 cut(s)	75, 168, 190
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	23
MalI	GATC	2 cut(s)	74, 170
MboI	GATC	2 cut(s)	72, 168
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	144, 190
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	2 cut(s)	72, 168
PkrI	GCNGC	4 cut(s)	8, 65, 180, 183
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	4 cut(s)	7, 64, 179, 182
Sau3AI	GATC	2 cut(s)	72, 168
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	3 cut(s)	26, 68, 183
SfcI	CTRYAG	1 cut(s)	182
SgeI	CNNG	9 cut(s)	28, 36, 59, 65, 67, 82, 90, 147, 151
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	120
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseI	GCWGC	4 cut(s)	6, 63, 178, 181
XmaJI	CCTAGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.