Rmu_sc0001647.1_g000009

Glycosyl transferases group 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001647.1
Physical Location & Seq
Forward (+)
33746 .. 39359
5614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001647.1_g000009.1.cds

Sequence Viewer

Length: 1506 bp
atggccagaaaaggagagaagagagggagggcttgtgtggtggtgttaggtgacattgggcgcagccctcgtatgcaataccatgctctttcgcttgcccgtcaggcatctctggaagtagatattgttgcatatggaggttccgaaccgcattctgctgtgttggagcatcaatctattcacatacacaaaatgccgcagtggccagcattcccccgtggtctacccagcatacttaaaccctttgtgcttctgctgaagccagtggttcaatttattgtgctcctttggtatctttgcgttaagatatctgctcctgatgtttttctagttcagaatccaccttctgttccaaccttagtcgctgtaaaatgggcaagctggcttaggcaatctgcatttatagttgattggcataattttggatatactttactggcattgtctcttggaagaagtagtcgatttgtggcaatataccgttgggtagagtggcaatttgggaggatggcagatggttcactatgtgtaacaagggcaatgcaacatgaattggctcaaaattggggaattaaagcaacagttctatatgatcagcctcctgagtttttccatcccgcttctcttgaagaacagcataagttgttctatagattagataaaaatctgaggcagccactcggtgttgaagattgcacaagcactggaataggggaagtggtgaataaggacatgcaggagactctgtttaccaccctggttggcgctgacattgcttcgaagccaaaccggccggcactgatagtgagcagtacaagctggactcctgatgaagattttggcattctcttggaagcagctgtcatgtatgacaggcgcgttgctgctattttaaatgaagatgattctaagaaagaagaggttctttggaaggaaatgcaaagtgggaagcaatacttgtatccaagactgttatttgtcattacaggtaaagggcctgaaaaagaaaaatatgaagaaaagattagaagattaaaactcaaacgggtggcatttcgtactgcgtggctatcagctgaagactatccactgcttcttggatcagcagatcttggtgtgtgcttacacacttcctcatcagggttggatcttcccatgaaggtggtggacatgtttggttgtggactgccggtttgcgctgtttcctactcatgtactttttgtgatgctgtccattgtaaaatgatgttcttggttttggtattcttggttcaaagcatcaaggaactagtgcaagtggagaaaaatggtcttctattttcatcatcttcagagctagctgatgaacttttgatgctgtttaagggttttccagatgcttgtgattcattgaaggttctgaggaatggtgcactggacatgtcttcgtctgtgaagtgggccactgagtgggaggagcatgctaaaggattaatcttagaggttatctctggaaacttggactga

Protein Analysis

501

Amino Acids

56.28

Weight (kDa)

6.65

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1449
AccI GTMKAC 1 cut(s) 223
AccII CGCG 1 cut(s) 879
AciI CCGC 3 cut(s) 149, 197, 618
AclWI GGATC 2 cut(s) 1108, 1155
AcoI YGGCCR 3 cut(s) 3, 203, 791
AcuI CTGAAG 3 cut(s) 278, 1098, 1314
AdeI CACNNNGTG 3 cut(s) 527, 683, 1449
AfaI GTAC 3 cut(s) 814, 1060, 1216
AfiI CCNNNNNNNGG 2 cut(s) 1140, 1449
AflIII ACRYGT 2 cut(s) 1170, 1419
AgsI TTSAA 5 cut(s) 272, 629, 689, 1274, 1393
AhlI ACTAGT 1 cut(s) 1288
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 6 cut(s) 381, 819, 860, 1076, 1336, 1340
AluI AGCT 6 cut(s) 381, 819, 860, 1076, 1336, 1340
Alw21I GWGCWC 2 cut(s) 285, 1414
Alw26I GTCTC 2 cut(s) 450, 734
Alw44I GTGCAC 1 cut(s) 1410
AlwI GGATC 2 cut(s) 1108, 1155
AoxI GGCC 5 cut(s) 3, 203, 791, 995, 1440
ApaLI GTGCAC 1 cut(s) 1410
ApeKI GCWGC 4 cut(s) 63, 673, 857, 884
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
AseI ATTAAT 1 cut(s) 1472
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 4 cut(s) 63, 767, 879, 1199
AspS9I GGNCC 2 cut(s) 995, 1440
AsuHPI GGTGA 2 cut(s) 62, 733
AsuII TTCGAA 1 cut(s) 779
AsuNHI GCTAGC 1 cut(s) 1336
BaeGI GKGCMC 1 cut(s) 1414
BalI TGGCCA 2 cut(s) 5, 205
BbsI GAAGAC 3 cut(s) 1086, 1304, 1416
Bbv12I GWGCWC 2 cut(s) 285, 1414
BbvI GCAGC 4 cut(s) 75, 685, 869, 871
BccI CCATC 3 cut(s) 502, 509, 621
BciT130I CCWGG 1 cut(s) 758
BciVI GTATCC 1 cut(s) 972
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 450, 734
BcuI ACTAGT 1 cut(s) 1288
BfaI CTAG 3 cut(s) 329, 1289, 1337
BfmI CTRYAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 768
BfuI GTATCC 1 cut(s) 972
BglI GCCNNNNNGGC 3 cut(s) 104, 202, 790
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 5 cut(s) 64, 197, 674, 858, 885
BlsI GCNGC 5 cut(s) 65, 198, 675, 859, 886
Bme1390I CCNGG 1 cut(s) 758
BmgT120I GGNCC 2 cut(s) 995, 1440
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 758
BmsI GCATC 6 cut(s) 116, 178, 1216, 1287, 1344, 1366
BmtI GCTAGC 1 cut(s) 1340
BpiI GAAGAC 3 cut(s) 1086, 1304, 1416
BplI GAGNNNNNCTC 2 cut(s) 1472, 1504
Bpu10I CCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 217, 756
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 731, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 1140, 1449
Bse118I RCCGGY 3 cut(s) 789, 793, 1189
Bse1I ACTGG 4 cut(s) 263, 441, 709, 1419
Bse3DI GCAATG 2 cut(s) 546, 771
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 217, 756
BseGI GGATG 2 cut(s) 513, 613
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 1140, 1449
BseMI GCAATG 2 cut(s) 546, 771
BseMII CTCAG 4 cut(s) 594, 659, 1391, 1437
BseNI ACTGG 4 cut(s) 263, 441, 709, 1419
BseRI GAGGAG 1 cut(s) 1469
BseSI GKGCMC 1 cut(s) 1414
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 4 cut(s) 75, 685, 869, 871
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 5 cut(s) 5, 205, 793, 997, 1442
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 285, 1414
BsiSI CCGG 3 cut(s) 790, 794, 1190
BslI CCNNNNNNNGG 2 cut(s) 1140, 1449
BsmAI GTCTC 2 cut(s) 450, 734
BsmI GAATGC 3 cut(s) 151, 209, 843
BsnI GGCC 5 cut(s) 5, 205, 793, 997, 1442
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 285, 1414
Bsp143I GATC 4 cut(s) 592, 1100, 1108, 1147
BspACI CCGC 3 cut(s) 149, 197, 618
BspANI GGCC 5 cut(s) 5, 205, 793, 997, 1442
BspCNI CTCAG 4 cut(s) 595, 660, 1392, 1438
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 1340
BspPI GGATC 2 cut(s) 1108, 1155
BspT104I TTCGAA 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 546, 771
BsrFI RCCGGY 3 cut(s) 789, 793, 1189
BsrI ACTGG 4 cut(s) 263, 441, 709, 1419
BssAI RCCGGY 3 cut(s) 789, 793, 1189
BssECI CCNNGG 2 cut(s) 217, 756
BssMI GATC 4 cut(s) 592, 1100, 1108, 1147
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 3 cut(s) 482, 583, 972
Bst6I CTCTTC 2 cut(s) 14, 912
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 7 cut(s) 96, 207, 379, 383, 795, 1338, 1461
BstDEI CTNAG 8 cut(s) 358, 386, 603, 668, 909, 1400, 1446, 1477
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 513, 613
BstFNI CGCG 1 cut(s) 879
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 4 cut(s) 63, 767, 879, 1199
BstKTI GATC 4 cut(s) 595, 1103, 1111, 1150
BstMAI GTCTC 2 cut(s) 450, 734
BstMBI GATC 4 cut(s) 592, 1100, 1108, 1147
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 4 cut(s) 736, 1174, 1423, 1463
BstSCI CCNGG 1 cut(s) 756
BstSFI CTRYAG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 1414
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 75, 685, 869, 871
BstV2I GAAGAC 3 cut(s) 1086, 1304, 1416
BstX2I RGATCY 2 cut(s) 1108, 1147
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 2 cut(s) 1108, 1147
BstZI CGGCCG 1 cut(s) 791
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 5 cut(s) 5, 205, 793, 997, 1442
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 513, 613
BtsI GCAGTG 2 cut(s) 206, 1088
BtsIMutI CAGTG 7 cut(s) 206, 270, 702, 797, 1088, 1412, 1443
Cac8I GCNNGC 7 cut(s) 96, 207, 379, 383, 795, 1338, 1461
CfoI GCGC 4 cut(s) 63, 767, 879, 1199
Cfr10I RCCGGY 3 cut(s) 789, 793, 1189
Cfr13I GGNCC 2 cut(s) 995, 1440
Csp6I GTAC 3 cut(s) 813, 1059, 1215
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 9 cut(s) 83, 548, 733, 865, 1156, 1171, 1212, 1420, 1460
CviQI GTAC 3 cut(s) 813, 1059, 1215
DdeI CTNAG 8 cut(s) 358, 386, 603, 668, 909, 1400, 1446, 1477
DpnI GATC 4 cut(s) 594, 1102, 1110, 1149
DpnII GATC 4 cut(s) 592, 1100, 1108, 1147
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 3 cut(s) 527, 683, 1449
EaeI YGGCCR 3 cut(s) 3, 203, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 2 cut(s) 14, 912
EarI CTCTTC 2 cut(s) 14, 912
EclXI CGGCCG 1 cut(s) 791
Eco32I GATATC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 791
Eco57I CTGAAG 3 cut(s) 278, 1098, 1314
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 756
EcoRV GATATC 1 cut(s) 309
FaeI CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1423, 1463
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 941, 973
FatI CATG 9 cut(s) 82, 547, 732, 864, 1155, 1170, 1211, 1419, 1459
FauI CCCGC 1 cut(s) 625
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FokI GGATG 2 cut(s) 520, 600
Fsp4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FspBI CTAG 3 cut(s) 329, 1289, 1337
GlaI GCGC 4 cut(s) 62, 766, 878, 1198
GluI GCNGC 5 cut(s) 64, 197, 674, 858, 885
GsaI CCCAGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 5 cut(s) 5, 205, 793, 997, 1442
HapII CCGG 3 cut(s) 790, 794, 1190
HhaI GCGC 4 cut(s) 63, 767, 879, 1199
Hin1II CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1423, 1463
Hin6I GCGC 4 cut(s) 61, 765, 877, 1197
HinP1I GCGC 4 cut(s) 61, 765, 877, 1197
HinfI GANTC 5 cut(s) 337, 742, 823, 905, 1385
HpaII CCGG 3 cut(s) 790, 794, 1190
HphI GGTGA 2 cut(s) 62, 733
Hpy166II GTNNAC 6 cut(s) 224, 521, 750, 1168, 1184, 1412
Hpy188I TCNGA 5 cut(s) 145, 336, 669, 1333, 1401
Hpy188III TCNNGA 7 cut(s) 113, 317, 602, 626, 827, 1373, 1491
Hpy8I GTNNAC 6 cut(s) 224, 521, 750, 1168, 1184, 1412
HpyAV CCTTC 4 cut(s) 354, 925, 1153, 1387
HpyCH4III ACNGT 3 cut(s) 482, 583, 972
HpyCH4V TGCA 9 cut(s) 76, 131, 398, 544, 696, 736, 940, 1294, 1412
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
HpyF3I CTNAG 8 cut(s) 358, 386, 603, 668, 909, 1400, 1446, 1477
Hsp92II CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1423, 1463
HspAI GCGC 4 cut(s) 61, 765, 877, 1197
KroI GCCGGC 1 cut(s) 793
KroNI GCCGGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 592, 1100, 1108, 1147
LmnI GCTCC 4 cut(s) 166, 288, 319, 1456
Lsp1109I GCAGC 4 cut(s) 75, 685, 869, 871
LweI GCATC 6 cut(s) 116, 178, 1216, 1287, 1344, 1366
MaeI CTAG 3 cut(s) 329, 1289, 1337
MaeIII GTNAC 2 cut(s) 50, 529
MalI GATC 4 cut(s) 594, 1102, 1110, 1149
MboI GATC 4 cut(s) 592, 1100, 1108, 1147
MflI RGATCY 2 cut(s) 1108, 1147
MhlI GDGCHC 2 cut(s) 285, 1414
MlsI TGGCCA 2 cut(s) 5, 205
MluCI AATT 6 cut(s) 272, 418, 497, 551, 562, 570
MluNI TGGCCA 2 cut(s) 5, 205
MlyI GAGTC 2 cut(s) 736, 817
MmeI TCCRAC 3 cut(s) 144, 377, 1125
Mox20I TGGCCA 2 cut(s) 5, 205
MroNI GCCGGC 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 2 cut(s) 5, 205
MseI TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1362, 1472
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 2 cut(s) 5, 205
MspA1I CMGCKG 2 cut(s) 860, 1076
MspI CCGG 3 cut(s) 790, 794, 1190
MspR9I CCNGG 1 cut(s) 758
Mva1269I GAATGC 3 cut(s) 151, 209, 843
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
NaeI GCCGGC 1 cut(s) 795
NdeI CATATG 1 cut(s) 133
NdeII GATC 4 cut(s) 592, 1100, 1108, 1147
NgoMIV GCCGGC 1 cut(s) 793
NheI GCTAGC 1 cut(s) 1336
NlaIII CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1423, 1463
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 4 cut(s) 736, 1174, 1423, 1463
NspV TTCGAA 1 cut(s) 779
PaeI GCATGC 1 cut(s) 1463
PciI ACATGT 2 cut(s) 1170, 1419
PctI GAATGC 3 cut(s) 151, 209, 843
PdiI GCCGGC 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 337, 905, 1385
PflMI CCANNNNNTGG 1 cut(s) 1449
PkrI GCNGC 5 cut(s) 65, 198, 675, 859, 886
PleI GAGTC 2 cut(s) 736, 817
PpsI GAGTC 2 cut(s) 736, 817
PscI ACATGT 2 cut(s) 1170, 1419
PshBI ATTAAT 1 cut(s) 1472
Psp6I CCWGG 1 cut(s) 756
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 995, 1440
PsrI GAACNNNNNNTAC 2 cut(s) 1254, 1286
PsuI RGATCY 2 cut(s) 1108, 1147
PvuII CAGCTG 2 cut(s) 860, 1076
RsaI GTAC 3 cut(s) 814, 1060, 1216
RsaNI GTAC 3 cut(s) 813, 1059, 1215
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1362, 1472
SatI GCNGC 5 cut(s) 64, 197, 674, 858, 885
Sau3AI GATC 4 cut(s) 592, 1100, 1108, 1147
Sau96I GGNCC 2 cut(s) 995, 1440
SchI GAGTC 2 cut(s) 736, 817
ScrFI CCNGG 1 cut(s) 758
SduI GDGCHC 2 cut(s) 285, 1414
SfaNI GCATC 6 cut(s) 116, 178, 1216, 1287, 1344, 1366
SfcI CTRYAG 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 1160
SpeI ACTAGT 1 cut(s) 1288
SphI GCATGC 1 cut(s) 1463
Sse9I AATT 6 cut(s) 272, 418, 497, 551, 562, 570
SsiI CCGC 3 cut(s) 149, 197, 618
SspMI CTAG 3 cut(s) 329, 1289, 1337
StyD4I CCNGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 482, 583, 972
TaqI TCGA 2 cut(s) 463, 779
TasI AATT 6 cut(s) 272, 418, 497, 551, 562, 570
TatI WGTACW 2 cut(s) 812, 1214
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 3 cut(s) 337, 905, 1385
Tru1I TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1362, 1472
Tru9I TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1362, 1472
TscAI CASTG 7 cut(s) 206, 270, 709, 804, 1095, 1419, 1450
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 4 cut(s) 63, 673, 857, 884
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 8 cut(s) 564, 846, 912, 1029, 1172, 1311, 1359, 1377
TspRI CASTG 7 cut(s) 206, 270, 709, 804, 1095, 1419, 1450
Van91I CCANNNNNTGG 1 cut(s) 1449
VneI GTGCAC 1 cut(s) 1410
VspI ATTAAT 1 cut(s) 1472
XceI RCATGY 4 cut(s) 736, 1174, 1423, 1463
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 3 cut(s) 329, 1289, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.