Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008696

Physical Location & Seq

Genomic Coordinates Forward (+)

21566177 .. 21574339

Gene Structure 8163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCCAGAAAAGGAGAGAAGAGAGGGAGGGCTTGTGTGGTGGTGTTAGGTGACATTGGGCGCAGCCCTCGTATGCAATACCATGCTCTTTCGCTTGCCCGTCAGGCATCTTTGGAAGTAGATATTGTTGCATATGGAGGTTCCGAACCGCATTCTGCTGTGTTGGAGCATCAATCTATTCACATACACAAAATGCCGCAGTGGCCAGCATTCCCCCGTGGTCTACCCAGCATACTTAAACCCTTTGTGCTTCTGCTGAAGCCAGTGGTTCAATTTATTGTGCTCCTTTGGTATCTTTGCGTTAAGATATCTGCTCCTGATGTTTTTCTAGTTCAGAATCCACCTTCTGTTCCAACCTTAGTCGCTGTAAAATGGGCAAGCTGGCTTAGGCAATCTGCATTTATAGTTGATTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTCGATTTGTGGCAATATACCGTTGGGTAGAGTGGCAATTTGGGAGGATGGCAGATGGTTCACTATGTGTAACGAGGGCTATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCAACAGTTCTATATGATCAGCCTCCTGAGTTTTTCCATCCCGCTTCACTTGAAGAACAGCATAAGTTGTTCTATAGATTAGATAAAAATCTGAGGCAGCCACTCGGTGTTGAAGATTGCACAAGCACTGGAATAGGGGAAGTGGTGAATAAGGACATGCAGGAGACTCTGTTTACCACCCTGGTTGGCGCTGACATTGCTTCGAAGCCAAACCGGCCGGCACTGATAGTGAGCAGTACAAGCTGGACTCCTGATGAAGATTTTGGCATTCTCCTGGAAGCAGCTGTCATGTATGACAGGCGCGTTGCTGCTATTTTAAATGAAGACGATTCTAAGAAAGAAGAGGTTCTTTGGAAGGAAATGCAAAGTGGGAAGCGATACTTGTATCCAAGACTGTTATTTGTCATTACAGGTAAAGGGCCTGAAAAAGAAAAATATGAAGAAAAGATTAGAAGATTAAAACTCAAACGGGTGGCATTTCGTACTGCGTGGCTATCAGCTGAAGACTATCCACTGCTTCTTGGATCAGCAGATCTTGGTGTGTGCTTACACACTTCCTCATCAGGGTTGGATCTTCCCATGAAGGTGGTGGACATGTTTGGTTGTGGACTGCCGGTTTGTGCTGTTTCCTACTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0048856 GO:0048868 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_trans_4_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

405

Amino Acids

45.73

Weight (kDa)

8.7

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_4_4	PF13579	34 - 193	3.4e-09	Glycosyl transferase 4-like domain
Glyco_transf_4	PF13439	35 - 193	1.7e-07	Glycosyltransferase Family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16570 AT1G16570
fragaria_vesca	FvH4_3g16570 FvH4_3g16570 FvH4_3g16570 FvH4_3g16570
malus_domestica	MD05G1209100.v1.1 MD10G1195500.v1.1
prunus_persica	Prupe.4G148400_v2.0.a1 Prupe.4G148400_v2.0.a1 Prupe.4G148400_v2.0.a1
pyrus_communis	pycom10g16920
rosa_chinensis	RchiOBHm_Chr5g0027601
rosa_laevigata	RLG00000033032
rosa_multiflora	Rmu_sc0001647.1_g000009
rosa_roxburghii	Rroxscaffold_1G00051930
rosa_rugosa	Rorug05G0100000 Rorug05G0100100
rosa_samantha	Rh5AG194400 Rh5BG192500 Rh5CG212500 Rh5DG194200
rosa_wichuraiana	Rw5G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	879
AciI	CCGC	3 cut(s)	149, 197, 618
AclWI	GGATC	2 cut(s)	1108, 1155
AcoI	YGGCCR	3 cut(s)	3, 203, 791
AcuI	CTGAAG	2 cut(s)	278, 1098
AdeI	CACNNNGTG	2 cut(s)	527, 683
AfaI	GTAC	2 cut(s)	814, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	1140, 1212
AflIII	ACRYGT	1 cut(s)	1170
AgsI	TTSAA	3 cut(s)	272, 629, 689
AjnI	CCWGG	2 cut(s)	756, 849
AluBI	AGCT	4 cut(s)	381, 819, 860, 1076
AluI	AGCT	4 cut(s)	381, 819, 860, 1076
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	450, 734
AlwI	GGATC	2 cut(s)	1108, 1155
AoxI	GGCC	4 cut(s)	3, 203, 791, 995
ApeKI	GCWGC	4 cut(s)	63, 673, 857, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	1176, 1208
Asp700I	GAANNNNTTC	1 cut(s)	921
AspLEI	GCGC	3 cut(s)	63, 767, 879
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	2 cut(s)	62, 733
AsuII	TTCGAA	1 cut(s)	779
BalI	TGGCCA	2 cut(s)	5, 205
BbsI	GAAGAC	2 cut(s)	906, 1086
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	75, 685, 869, 871
BccI	CCATC	3 cut(s)	502, 509, 621
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	2 cut(s)	758, 851
BciVI	GTATCC	1 cut(s)	972
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	450, 734
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	972
BglI	GCCNNNNNGGC	3 cut(s)	104, 202, 790
BglII	AGATCT	1 cut(s)	1108
BisI	GCNGC	5 cut(s)	64, 197, 674, 858, 885
BlsI	GCNGC	5 cut(s)	65, 198, 675, 859, 886
Bme1390I	CCNGG	2 cut(s)	758, 851
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	758, 851
BmsI	GCATC	2 cut(s)	116, 178
BpiI	GAAGAC	2 cut(s)	906, 1086
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	217, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 731, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	1140, 1212
Bse118I	RCCGGY	3 cut(s)	789, 793, 1189
Bse1I	ACTGG	3 cut(s)	263, 441, 709
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	758, 851
BseDI	CCNNGG	2 cut(s)	217, 756
BseGI	GGATG	2 cut(s)	513, 613
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	2 cut(s)	1140, 1212
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	594, 659
BseNI	ACTGG	3 cut(s)	263, 441, 709
BseX3I	CGGCCG	1 cut(s)	791
BseXI	GCAGC	4 cut(s)	75, 685, 869, 871
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	879
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	4 cut(s)	5, 205, 793, 997
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	790, 794, 1190
BslI	CCNNNNNNNGG	2 cut(s)	1140, 1212
BsmAI	GTCTC	2 cut(s)	450, 734
BsmI	GAATGC	3 cut(s)	151, 209, 843
BsnI	GGCC	4 cut(s)	5, 205, 793, 997
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	592, 1100, 1108, 1147
BspACI	CCGC	3 cut(s)	149, 197, 618
BspANI	GGCC	4 cut(s)	5, 205, 793, 997
BspCNI	CTCAG	2 cut(s)	595, 660
BspFNI	CGCG	1 cut(s)	879
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	1108, 1155
BspT104I	TTCGAA	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	3 cut(s)	789, 793, 1189
BsrI	ACTGG	3 cut(s)	263, 441, 709
BssAI	RCCGGY	3 cut(s)	789, 793, 1189
BssECI	CCNNGG	2 cut(s)	217, 756
BssMI	GATC	4 cut(s)	592, 1100, 1108, 1147
Bst2UI	CCWGG	2 cut(s)	758, 851
Bst4CI	ACNGT	3 cut(s)	482, 583, 972
Bst6I	CTCTTC	2 cut(s)	14, 912
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	5 cut(s)	96, 207, 379, 383, 795
BstDEI	CTNAG	5 cut(s)	358, 386, 603, 668, 909
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	513, 613
BstFNI	CGCG	1 cut(s)	879
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	3 cut(s)	63, 767, 879
BstKTI	GATC	4 cut(s)	595, 1103, 1111, 1150
BstMAI	GTCTC	2 cut(s)	450, 734
BstMBI	GATC	4 cut(s)	592, 1100, 1108, 1147
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 202, 773, 790, 816
BstNI	CCWGG	2 cut(s)	758, 851
BstNSI	RCATGY	2 cut(s)	736, 1174
BstSCI	CCNGG	2 cut(s)	756, 849
BstSFI	CTRYAG	1 cut(s)	649
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	4 cut(s)	75, 685, 869, 871
BstV2I	GAAGAC	2 cut(s)	906, 1086
BstX2I	RGATCY	2 cut(s)	1108, 1147
BstXI	CCANNNNNNTGG	1 cut(s)	1162
BstYI	RGATCY	2 cut(s)	1108, 1147
BstZI	CGGCCG	1 cut(s)	791
BsuI	GTATCC	1 cut(s)	972
BsuRI	GGCC	4 cut(s)	5, 205, 793, 997
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	513, 613
BtsI	GCAGTG	2 cut(s)	206, 1088
BtsIMutI	CAGTG	5 cut(s)	206, 270, 702, 797, 1088
Cac8I	GCNNGC	5 cut(s)	96, 207, 379, 383, 795
CfoI	GCGC	3 cut(s)	63, 767, 879
Cfr10I	RCCGGY	3 cut(s)	789, 793, 1189
Cfr13I	GGNCC	1 cut(s)	995
Csp6I	GTAC	2 cut(s)	813, 1059
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	7 cut(s)	83, 548, 733, 865, 1156, 1171, 1212
CviQI	GTAC	2 cut(s)	813, 1059
DdeI	CTNAG	5 cut(s)	358, 386, 603, 668, 909
DpnI	GATC	4 cut(s)	594, 1102, 1110, 1149
DpnII	GATC	4 cut(s)	592, 1100, 1108, 1147
DraI	TTTAAA	1 cut(s)	894
DraIII	CACNNNGTG	2 cut(s)	527, 683
EaeI	YGGCCR	3 cut(s)	3, 203, 791
EagI	CGGCCG	1 cut(s)	791
Eam1104I	CTCTTC	2 cut(s)	14, 912
EarI	CTCTTC	2 cut(s)	14, 912
EclXI	CGGCCG	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	309
Eco52I	CGGCCG	1 cut(s)	791
Eco57I	CTGAAG	2 cut(s)	278, 1098
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRII	CCWGG	2 cut(s)	756, 849
EcoRV	GATATC	1 cut(s)	309
FaeI	CATG	7 cut(s)	86, 551, 736, 868, 1159, 1174, 1215
FalI	AAGNNNNNCTT	4 cut(s)	909, 941, 941, 973
FatI	CATG	7 cut(s)	82, 547, 732, 864, 1155, 1170, 1211
FauI	CCCGC	1 cut(s)	625
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	64, 197, 674, 858, 885
FokI	GGATG	2 cut(s)	520, 600
Fsp4HI	GCNGC	5 cut(s)	64, 197, 674, 858, 885
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	3 cut(s)	62, 766, 878
GluI	GCNGC	5 cut(s)	64, 197, 674, 858, 885
GsaI	CCCAGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	4 cut(s)	5, 205, 793, 997
HapII	CCGG	3 cut(s)	790, 794, 1190
HhaI	GCGC	3 cut(s)	63, 767, 879
Hin1II	CATG	7 cut(s)	86, 551, 736, 868, 1159, 1174, 1215
Hin6I	GCGC	3 cut(s)	61, 765, 877
HinP1I	GCGC	3 cut(s)	61, 765, 877
HinfI	GANTC	4 cut(s)	337, 742, 823, 905
HpaII	CCGG	3 cut(s)	790, 794, 1190
HphI	GGTGA	2 cut(s)	62, 733
Hpy166II	GTNNAC	5 cut(s)	224, 521, 750, 1168, 1184
Hpy188I	TCNGA	3 cut(s)	145, 336, 669
Hpy188III	TCNNGA	3 cut(s)	317, 602, 827
Hpy8I	GTNNAC	5 cut(s)	224, 521, 750, 1168, 1184
HpyAV	CCTTC	3 cut(s)	354, 925, 1153
HpyCH4III	ACNGT	3 cut(s)	482, 583, 972
HpyCH4V	TGCA	7 cut(s)	76, 131, 398, 544, 696, 736, 940
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 202, 773, 790, 816
HpyF3I	CTNAG	5 cut(s)	358, 386, 603, 668, 909
Hsp92II	CATG	7 cut(s)	86, 551, 736, 868, 1159, 1174, 1215
HspAI	GCGC	3 cut(s)	61, 765, 877
KroI	GCCGGC	1 cut(s)	793
KroNI	GCCGGC	1 cut(s)	795
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	592, 1100, 1108, 1147
LmnI	GCTCC	3 cut(s)	166, 288, 319
Lsp1109I	GCAGC	4 cut(s)	75, 685, 869, 871
LweI	GCATC	2 cut(s)	116, 178
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	50, 529
MalI	GATC	4 cut(s)	594, 1102, 1110, 1149
MboI	GATC	4 cut(s)	592, 1100, 1108, 1147
MflI	RGATCY	2 cut(s)	1108, 1147
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	2 cut(s)	5, 205
MluCI	AATT	6 cut(s)	272, 418, 497, 551, 562, 570
MluNI	TGGCCA	2 cut(s)	5, 205
MlyI	GAGTC	2 cut(s)	736, 817
MmeI	TCCRAC	3 cut(s)	144, 377, 1125
Mox20I	TGGCCA	2 cut(s)	5, 205
MroNI	GCCGGC	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	921
MscI	TGGCCA	2 cut(s)	5, 205
MseI	TTAA	5 cut(s)	237, 303, 573, 893, 1034
MslI	CAYNNNNRTG	1 cut(s)	1160
Msp20I	TGGCCA	2 cut(s)	5, 205
MspA1I	CMGCKG	2 cut(s)	860, 1076
MspI	CCGG	3 cut(s)	790, 794, 1190
MspR9I	CCNGG	2 cut(s)	758, 851
Mva1269I	GAATGC	3 cut(s)	151, 209, 843
MvaI	CCWGG	2 cut(s)	758, 851
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	5 cut(s)	104, 202, 773, 790, 816
NaeI	GCCGGC	1 cut(s)	795
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	4 cut(s)	592, 1100, 1108, 1147
NgoMIV	GCCGGC	1 cut(s)	793
NlaIII	CATG	7 cut(s)	86, 551, 736, 868, 1159, 1174, 1215
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	2 cut(s)	736, 1174
NspV	TTCGAA	1 cut(s)	779
PciI	ACATGT	1 cut(s)	1170
PctI	GAATGC	3 cut(s)	151, 209, 843
PdiI	GCCGGC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	337, 905
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	5 cut(s)	65, 198, 675, 859, 886
PleI	GAGTC	2 cut(s)	736, 817
PpsI	GAGTC	2 cut(s)	736, 817
PscI	ACATGT	1 cut(s)	1170
Psp6I	CCWGG	2 cut(s)	756, 849
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	756, 849
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	1108, 1147
PvuII	CAGCTG	2 cut(s)	860, 1076
RsaI	GTAC	2 cut(s)	814, 1060
RsaNI	GTAC	2 cut(s)	813, 1059
RseI	CAYNNNNRTG	1 cut(s)	1160
SaqAI	TTAA	5 cut(s)	237, 303, 573, 893, 1034
SatI	GCNGC	5 cut(s)	64, 197, 674, 858, 885
Sau3AI	GATC	4 cut(s)	592, 1100, 1108, 1147
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	2 cut(s)	736, 817
ScrFI	CCNGG	2 cut(s)	758, 851
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	116, 178
SfcI	CTRYAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	1160
Sse9I	AATT	6 cut(s)	272, 418, 497, 551, 562, 570
SsiI	CCGC	3 cut(s)	149, 197, 618
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	756, 849
TaaI	ACNGT	3 cut(s)	482, 583, 972
TaqI	TCGA	2 cut(s)	463, 779
TasI	AATT	6 cut(s)	272, 418, 497, 551, 562, 570
TatI	WGTACW	1 cut(s)	812
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	337, 905
Tru1I	TTAA	5 cut(s)	237, 303, 573, 893, 1034
Tru9I	TTAA	5 cut(s)	237, 303, 573, 893, 1034
TscAI	CASTG	5 cut(s)	206, 270, 709, 804, 1095
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	4 cut(s)	63, 673, 857, 884
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	5 cut(s)	564, 846, 912, 1029, 1172
TspRI	CASTG	5 cut(s)	206, 270, 709, 804, 1095
XceI	RCATGY	2 cut(s)	736, 1174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1162
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.