Rh5BG192500

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008696
Physical Location & Seq
Forward (+)
21238808 .. 21244883
6076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG192500.1

Sequence Viewer

Length: 1416 bp
ATGGCCAGAAAAGGAGAGAAGAGAGGGAGGGCTTGTGTGGTGGTATTAGGTGACATTGGGCGCAGCCCTCGTATGCAATACCATGCTCTTTCGCTTGCCCGTCAGGCATCTCTGGAAGTAGATATTGTTGCATATGGAGGTTCCGAACCGCATTCTGCTGTGTTGGAGCATCAATCTATTCACATACACAAAATGCCGCAGTGGCCAGCATTCCCCCGTGGTCTACCCAGCATACTTAAACCCTTTGTGCTTCTGCTGAAGCCAGTGGTTCAATTTATTGTGCTCCTTTGGTATCTTTGCGTTAAGATATCTGCTCCTGATGTTTTTCTAGTTCAGAATCCACCTTCTGTTCCAACCTTAGTTGCTGTAAAATGGGCAAGCTGGCTTAGGCAATCTGCATTTATAGTTGATTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTCGATTTGTGGCAATATACCGTTGGGTAGAGTGGCAATTTGGGAGGATGGCAGATGGTTCACTATGTGTAACGAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCAACAGTTCTATATGATCAGCCTCCTGAGTTTTTCCATCCCACTTCACTTGAAGAACAGCATAAGTTGTTCTATAGATTAGATAAAAATCTGAGGCAGCCACTCGGTGTTGAAGATTGCACAAGCACTGGAATAGGGGAAGTGGTGAATAAGGACATGCAGGAGACTCTGTTTACCACCCTGGTTGGCTCTGACATTGCTTCGAAGCCAAACCGGCCGGCACTGATAGTGAGCAGTACAAGCTGGACTCCTGATGAAGATTTTGGCATTCTCCTGGAAGCAGCTGTCATGTATGACAGGCGCGTTGCTGCTATTTTAAATGAAGACGATTCTAAGAAAGAAGAGGTTCTTTGGAAGGAAATGCAAAGTGGGAAGCAATACTTATATCCAAGACTGTTATTTGTCATTACAGGTAAAGGGCCTGAAAAAGAAAAATATGAAGAAAAGATTAGAAGATTAAAACTCAAACGGGTGGCATTTCGTACTGCGTGGCTATCAGCTGAAGACTATCCACTGCTTCTTGGATCAGCAGATCTTGGTGTGTGCTTACACACTTCCTCATCAGGGTTGGATCTTCCCATGAAGGTGGTGGACATGTTTGGTTGTGGACTGCCGGTTTGCGCTGTTTCCTACTCATGCATCAAGGAACTAGTGCAAGTGGAGAAAAATGGTCTTCTATTTTCATCATCTTCAGAGCTAGCTGATGAACTTTTGGTTACTTTATCGATCAAGTTACTTTCTCAGAATCCCCATTCAGAACAATTTGTCCTTATTATATCATTACTATTCAGTGGATCAAGCGAAATATCTCTAGTAAAAAAAGAGATATACAATGCATGA

Protein Analysis

471

Amino Acids

52.94

Weight (kDa)

7.61

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 34 - 193 4.7e-09 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 35 - 193 2.3e-07 Glycosyltransferase Family 4
Glyco_trans_1_4 PF13692 307 - 431 1.8e-10 Glycosyl transferases group 1
Glycos_transf_1 PF00534 309 - 445 3.5e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AccII CGCG 1 cut(s) 879
AciI CCGC 2 cut(s) 149, 197
AclWI GGATC 3 cut(s) 1108, 1155, 1378
AcoI YGGCCR 3 cut(s) 3, 203, 791
AcuI CTGAAG 3 cut(s) 278, 1098, 1251
AdeI CACNNNGTG 2 cut(s) 527, 683
AfaI GTAC 2 cut(s) 814, 1060
AfiI CCNNNNNNNGG 1 cut(s) 1140
AflIII ACRYGT 1 cut(s) 1170
AgsI TTSAA 3 cut(s) 272, 629, 689
AhlI ACTAGT 1 cut(s) 1225
AjnI CCWGG 2 cut(s) 756, 849
AloI GAACNNNNNNTCC 2 cut(s) 1326, 1358
AluBI AGCT 6 cut(s) 381, 819, 860, 1076, 1273, 1277
AluI AGCT 6 cut(s) 381, 819, 860, 1076, 1273, 1277
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 450, 734
AlwI GGATC 3 cut(s) 1108, 1155, 1378
AoxI GGCC 4 cut(s) 3, 203, 791, 995
ApeKI GCWGC 4 cut(s) 63, 673, 857, 884
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 3 cut(s) 63, 879, 1199
AspS9I GGNCC 1 cut(s) 995
AsuHPI GGTGA 2 cut(s) 62, 733
AsuII TTCGAA 1 cut(s) 779
AsuNHI GCTAGC 1 cut(s) 1273
BalI TGGCCA 2 cut(s) 5, 205
BbsI GAAGAC 3 cut(s) 906, 1086, 1241
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 4 cut(s) 75, 685, 869, 871
BccI CCATC 3 cut(s) 502, 509, 621
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 2 cut(s) 758, 851
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 450, 734
BcuI ACTAGT 1 cut(s) 1225
BfaI CTAG 4 cut(s) 329, 1226, 1274, 1388
BfmI CTRYAG 1 cut(s) 649
BglI GCCNNNNNGGC 3 cut(s) 104, 202, 790
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 5 cut(s) 64, 197, 674, 858, 885
BlsI GCNGC 5 cut(s) 65, 198, 675, 859, 886
Bme1390I CCNGG 2 cut(s) 758, 851
BmgT120I GGNCC 1 cut(s) 995
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 758, 851
BmsI GCATC 3 cut(s) 116, 178, 1224
BmtI GCTAGC 1 cut(s) 1277
BpiI GAAGAC 3 cut(s) 906, 1086, 1241
Bpu10I CCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 779
Bsa29I ATCGAT 1 cut(s) 1301
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 217, 756
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 1140
Bse118I RCCGGY 3 cut(s) 789, 793, 1189
Bse1I ACTGG 3 cut(s) 263, 441, 709
Bse3DI GCAATG 2 cut(s) 546, 771
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 2 cut(s) 758, 851
BseCI ATCGAT 1 cut(s) 1301
BseDI CCNNGG 2 cut(s) 217, 756
BseGI GGATG 2 cut(s) 513, 613
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 1140
BseMI GCAATG 2 cut(s) 546, 771
BseMII CTCAG 3 cut(s) 594, 659, 1331
BseNI ACTGG 3 cut(s) 263, 441, 709
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 4 cut(s) 75, 685, 869, 871
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 4 cut(s) 5, 205, 793, 997
BshVI ATCGAT 1 cut(s) 1301
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 790, 794, 1190
BslI CCNNNNNNNGG 1 cut(s) 1140
BsmAI GTCTC 2 cut(s) 450, 734
BsmI GAATGC 3 cut(s) 151, 209, 843
BsnI GGCC 4 cut(s) 5, 205, 793, 997
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
BspACI CCGC 2 cut(s) 149, 197
BspANI GGCC 4 cut(s) 5, 205, 793, 997
BspCNI CTCAG 3 cut(s) 595, 660, 1330
BspDI ATCGAT 1 cut(s) 1301
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 1277
BspPI GGATC 3 cut(s) 1108, 1155, 1378
BspT104I TTCGAA 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 546, 771
BsrFI RCCGGY 3 cut(s) 789, 793, 1189
BsrI ACTGG 3 cut(s) 263, 441, 709
BssAI RCCGGY 3 cut(s) 789, 793, 1189
BssECI CCNNGG 2 cut(s) 217, 756
BssMI GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
Bst2UI CCWGG 2 cut(s) 758, 851
Bst4CI ACNGT 3 cut(s) 482, 583, 972
Bst6I CTCTTC 2 cut(s) 14, 912
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 6 cut(s) 96, 207, 379, 383, 795, 1275
BstDEI CTNAG 6 cut(s) 358, 386, 603, 668, 909, 1317
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 513, 613
BstFNI CGCG 1 cut(s) 879
BstHHI GCGC 3 cut(s) 63, 879, 1199
BstKTI GATC 6 cut(s) 595, 1103, 1111, 1150, 1305, 1373
BstMAI GTCTC 2 cut(s) 450, 734
BstMBI GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
BstNI CCWGG 2 cut(s) 758, 851
BstNSI RCATGY 2 cut(s) 736, 1174
BstSCI CCNGG 2 cut(s) 756, 849
BstSFI CTRYAG 1 cut(s) 649
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 75, 685, 869, 871
BstV2I GAAGAC 3 cut(s) 906, 1086, 1241
BstX2I RGATCY 2 cut(s) 1108, 1147
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 2 cut(s) 1108, 1147
BstZI CGGCCG 1 cut(s) 791
Bsu15I ATCGAT 1 cut(s) 1301
BsuRI GGCC 4 cut(s) 5, 205, 793, 997
BsuTUI ATCGAT 1 cut(s) 1301
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 513, 613
BtsI GCAGTG 2 cut(s) 206, 1088
BtsIMutI CAGTG 6 cut(s) 206, 270, 702, 797, 1088, 1372
Cac8I GCNNGC 6 cut(s) 96, 207, 379, 383, 795, 1275
CfoI GCGC 3 cut(s) 63, 879, 1199
Cfr10I RCCGGY 3 cut(s) 789, 793, 1189
Cfr13I GGNCC 1 cut(s) 995
ClaI ATCGAT 1 cut(s) 1301
Csp6I GTAC 2 cut(s) 813, 1059
CspCI CAANNNNNGTGG 4 cut(s) 607, 642, 742, 777
CviAII CATG 8 cut(s) 83, 548, 733, 865, 1156, 1171, 1212, 1413
CviQI GTAC 2 cut(s) 813, 1059
DdeI CTNAG 6 cut(s) 358, 386, 603, 668, 909, 1317
DpnI GATC 6 cut(s) 594, 1102, 1110, 1149, 1304, 1372
DpnII GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 2 cut(s) 527, 683
EaeI YGGCCR 3 cut(s) 3, 203, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 2 cut(s) 14, 912
EarI CTCTTC 2 cut(s) 14, 912
EclXI CGGCCG 1 cut(s) 791
Eco32I GATATC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 791
Eco57I CTGAAG 3 cut(s) 278, 1098, 1251
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 756, 849
EcoRV GATATC 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 1217, 1414
FaeI CATG 8 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1416
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 941, 973
FatI CATG 8 cut(s) 82, 547, 732, 864, 1155, 1170, 1211, 1412
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FokI GGATG 2 cut(s) 520, 600
Fsp4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FspBI CTAG 4 cut(s) 329, 1226, 1274, 1388
GlaI GCGC 3 cut(s) 62, 878, 1198
GluI GCNGC 5 cut(s) 64, 197, 674, 858, 885
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 4 cut(s) 5, 205, 793, 997
HapII CCGG 3 cut(s) 790, 794, 1190
HhaI GCGC 3 cut(s) 63, 879, 1199
Hin1II CATG 8 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1416
Hin6I GCGC 3 cut(s) 61, 877, 1197
HinP1I GCGC 3 cut(s) 61, 877, 1197
HinfI GANTC 5 cut(s) 337, 742, 823, 905, 1321
HpaII CCGG 3 cut(s) 790, 794, 1190
HphI GGTGA 2 cut(s) 62, 733
Hpy166II GTNNAC 5 cut(s) 224, 521, 750, 1168, 1184
Hpy188I TCNGA 7 cut(s) 145, 336, 669, 769, 1270, 1320, 1333
Hpy188III TCNNGA 4 cut(s) 113, 317, 602, 827
Hpy8I GTNNAC 5 cut(s) 224, 521, 750, 1168, 1184
HpyAV CCTTC 3 cut(s) 354, 925, 1153
HpyCH4III ACNGT 3 cut(s) 482, 583, 972
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
HpyF3I CTNAG 6 cut(s) 358, 386, 603, 668, 909, 1317
Hsp92II CATG 8 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1416
HspAI GCGC 3 cut(s) 61, 877, 1197
KroI GCCGGC 1 cut(s) 793
KroNI GCCGGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
LmnI GCTCC 3 cut(s) 166, 288, 319
Lsp1109I GCAGC 4 cut(s) 75, 685, 869, 871
LweI GCATC 3 cut(s) 116, 178, 1224
MaeI CTAG 4 cut(s) 329, 1226, 1274, 1388
MaeIII GTNAC 4 cut(s) 50, 529, 1291, 1308
MalI GATC 6 cut(s) 594, 1102, 1110, 1149, 1304, 1372
MboI GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
MflI RGATCY 2 cut(s) 1108, 1147
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 2 cut(s) 5, 205
MluCI AATT 7 cut(s) 272, 418, 497, 551, 562, 570, 1337
MluNI TGGCCA 2 cut(s) 5, 205
MlyI GAGTC 2 cut(s) 736, 817
MmeI TCCRAC 3 cut(s) 144, 377, 1125
Mox20I TGGCCA 2 cut(s) 5, 205
Mph1103I ATGCAT 2 cut(s) 1217, 1414
MroNI GCCGGC 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 2 cut(s) 5, 205
MseI TTAA 5 cut(s) 237, 303, 573, 893, 1034
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 2 cut(s) 5, 205
MspA1I CMGCKG 2 cut(s) 860, 1076
MspI CCGG 3 cut(s) 790, 794, 1190
MspR9I CCNGG 2 cut(s) 758, 851
Mva1269I GAATGC 3 cut(s) 151, 209, 843
MvaI CCWGG 2 cut(s) 758, 851
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
NaeI GCCGGC 1 cut(s) 795
NdeI CATATG 1 cut(s) 133
NdeII GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
NgoMIV GCCGGC 1 cut(s) 793
NheI GCTAGC 1 cut(s) 1273
NlaIII CATG 8 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1416
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 2 cut(s) 1217, 1414
NspI RCATGY 2 cut(s) 736, 1174
NspV TTCGAA 1 cut(s) 779
PciI ACATGT 1 cut(s) 1170
PctI GAATGC 3 cut(s) 151, 209, 843
PdiI GCCGGC 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 337, 905, 1321
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 5 cut(s) 65, 198, 675, 859, 886
PleI GAGTC 2 cut(s) 736, 817
PpsI GAGTC 2 cut(s) 736, 817
PscI ACATGT 1 cut(s) 1170
Psp6I CCWGG 2 cut(s) 756, 849
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 756, 849
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 995
PsuI RGATCY 2 cut(s) 1108, 1147
PvuII CAGCTG 2 cut(s) 860, 1076
RsaI GTAC 2 cut(s) 814, 1060
RsaNI GTAC 2 cut(s) 813, 1059
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 5 cut(s) 237, 303, 573, 893, 1034
SatI GCNGC 5 cut(s) 64, 197, 674, 858, 885
Sau3AI GATC 6 cut(s) 592, 1100, 1108, 1147, 1302, 1370
Sau96I GGNCC 1 cut(s) 995
SchI GAGTC 2 cut(s) 736, 817
ScrFI CCNGG 2 cut(s) 758, 851
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 3 cut(s) 116, 178, 1224
SfcI CTRYAG 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 1160
SpeI ACTAGT 1 cut(s) 1225
Sse9I AATT 7 cut(s) 272, 418, 497, 551, 562, 570, 1337
SsiI CCGC 2 cut(s) 149, 197
SspMI CTAG 4 cut(s) 329, 1226, 1274, 1388
StyD4I CCNGG 2 cut(s) 756, 849
TaaI ACNGT 3 cut(s) 482, 583, 972
TaqI TCGA 3 cut(s) 463, 779, 1301
TasI AATT 7 cut(s) 272, 418, 497, 551, 562, 570, 1337
TatI WGTACW 1 cut(s) 812
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 3 cut(s) 337, 905, 1321
Tru1I TTAA 5 cut(s) 237, 303, 573, 893, 1034
Tru9I TTAA 5 cut(s) 237, 303, 573, 893, 1034
TscAI CASTG 6 cut(s) 206, 270, 709, 804, 1095, 1372
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 4 cut(s) 63, 673, 857, 884
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 7 cut(s) 564, 846, 912, 1029, 1172, 1248, 1296
TspRI CASTG 6 cut(s) 206, 270, 709, 804, 1095, 1372
XceI RCATGY 2 cut(s) 736, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 4 cut(s) 329, 1226, 1274, 1388
Zsp2I ATGCAT 2 cut(s) 1217, 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.