FvH4_3g16570

Glycosyl transferases group 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
10445832 .. 10451212
5381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16570.t4

Sequence Viewer

Length: 1443 bp
ATGGCCAGAAAAGGAGAGAAGAGAGGGAGGGCTTGTGTGGTGGTGTTGGGTGACATTGGGCGCAGCCCTCGTATGCAATACCATGCTCTTTCTCTTGCCCGTCAGGCATCTTTGGAAGTAGATATTGTTGCATATGGAGGTTCTGAACCCCATTCTGCTGTGTTGGAGCATCAGTCTATTCACATACACAAAATGCCGCAGTGGCCAGCATTCCCCCGTGGTGTGCCCAAGATACTTAAACCCTTTGTGCTTTTGCTGAAGCCAGTGGTTCAATTTATTGTGCTTCTTTGGTTTCTTTGCGTTAGGATATCTGCTCCTGATGTTTTCCTAGTTCAGAATCCACCTTCTGTTCCAACCTTAGTGGCTGTAAAATGGGCAAGCTGGCTTAGGAAATCTGCATTTATAGTTGATTGGCATAATTTTGGATATACTTTACTGGCACTGTCTCTTGGAAGAAGTAGCCGATTTGTTGCAATATACCGTTGGGTAGAGAGGCATTTTGGGAGGATGGCAGATGGGTCGCTGTGTGTAACAAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCAACAGTTCTATATGATCAGCCTCCTGAGTTTTTTCGTCCCGCTTCACTTGAAGAACAGCATAAGTTGTTCTGCAGATTAGATAAAAATCTGAGGCAGCCACTCGGTGTTGAAGATTGCGCAAGCACTGGAACAGAGGAAGTGGTGGATAAGGACATAAATGAGACTCTGTTTACCACCCTGGTTGGCGCTGAAATTACTTCAAAGCCAAACCGGCCGGCACTAATAGTTAGCAGTACAAGCTGGACTCCTGATGAAGATTTTGGCATTCTTCTGGAAGCAGCTGTCATGTATGACAGGCGTGTTGCTGCTATTTTAAATGAAGACGATTCTAATAAAGAAGAGATTCTTTGGAAAGAAATGCAAAGTGGGAAACAATACTTGCATCCAAGACTGTTATTTGTCATTACAGGTAAAGGGCCTGAAAAACAAAAGTATGAAGAAAAGATTAGAAGATTAAAACTCAAACGGGTGGCATTTCGTACTGCGTGGCTATCAGCTGAAGACTATCCACTGCTTCTTGGATCAGCTGATCTTGGTGTTTGCTTACACACTTCGTCATCAGGGTTGGATCTTCCCATGAAGGTGGTGGACATGTTTGGTTGTGGACTACCAGTTTGCGCTGTTTCCTACTCATGCATCAAGGAACTGGTGCAAGTGGAGAAAAATGGTCTTCTCTTTTCATCATCTTCAGAGCTAGCTGATGAACTTTTGATGCTGTTTAAGGGTTTTCCAGACGATTGTGAGTCATTGAAGGTTCTGAGGAATGGTGCACTGGACATGTCTTCATCTGTGAGGTGGGCTACTGAGTGGGAAGAGAATGCCAAAGGCTTGATCTTAAAGGTTATCTCTGGAAACTTAGACTGA

Protein Analysis

481

Amino Acids

53.93

Weight (kDa)

7.58

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 34 - 193 4.6e-11 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 35 - 193 4.9e-08 Glycosyltransferase Family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 697
AciI CCGC 2 cut(s) 197, 618
AclWI GGATC 2 cut(s) 1108, 1155
AcoI YGGCCR 3 cut(s) 3, 203, 791
AcuI CTGAAG 3 cut(s) 278, 1098, 1251
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 2 cut(s) 814, 1060
AflIII ACRYGT 2 cut(s) 1170, 1356
AgsI TTSAA 5 cut(s) 272, 629, 689, 780, 1330
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 7 cut(s) 381, 819, 860, 1076, 1106, 1273, 1277
AluI AGCT 7 cut(s) 381, 819, 860, 1076, 1106, 1273, 1277
Alw21I GWGCWC 1 cut(s) 1351
Alw26I GTCTC 2 cut(s) 450, 734
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 2 cut(s) 1108, 1155
AoxI GGCC 4 cut(s) 3, 203, 791, 995
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 4 cut(s) 63, 673, 857, 884
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 4 cut(s) 63, 698, 767, 1199
AspS9I GGNCC 1 cut(s) 995
AsuHPI GGTGA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1273
BaeGI GKGCMC 2 cut(s) 228, 1351
BalI TGGCCA 2 cut(s) 5, 205
BbsI GAAGAC 4 cut(s) 906, 1086, 1241, 1353
Bbv12I GWGCWC 1 cut(s) 1351
BbvI GCAGC 4 cut(s) 75, 685, 869, 871
BccI CCATC 2 cut(s) 502, 509
BcgI CGANNNNNNTGC 2 cut(s) 501, 535
BciT130I CCWGG 1 cut(s) 758
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 450, 734
BfaI CTAG 2 cut(s) 329, 1274
BfmI CTRYAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 768
BglI GCCNNNNNGGC 3 cut(s) 104, 202, 790
BisI GCNGC 5 cut(s) 64, 197, 674, 858, 885
BlsI GCNGC 5 cut(s) 65, 198, 675, 859, 886
Bme1390I CCNGG 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 995
BmrFI CCNGG 1 cut(s) 758
BmsI GCATC 5 cut(s) 116, 178, 970, 1224, 1281
BmtI GCTAGC 1 cut(s) 1277
BpiI GAAGAC 4 cut(s) 906, 1086, 1241, 1353
Bpu10I CCTNAGC 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 217, 756
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 158, 188
Bse118I RCCGGY 2 cut(s) 789, 793
Bse1I ACTGG 6 cut(s) 263, 441, 709, 1190, 1230, 1356
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 217, 756
BseGI GGATG 2 cut(s) 513, 961
BseJI GATNNNNATC 1 cut(s) 663
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 4 cut(s) 594, 659, 1328, 1374
BseNI ACTGG 6 cut(s) 263, 441, 709, 1190, 1230, 1356
BseSI GKGCMC 2 cut(s) 228, 1351
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 4 cut(s) 75, 685, 869, 871
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 4 cut(s) 5, 205, 793, 997
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 1351
BsiSI CCGG 2 cut(s) 790, 794
BslFI GGGAC 1 cut(s) 600
BsmAI GTCTC 2 cut(s) 450, 734
BsmFI GGGAC 1 cut(s) 600
BsmI GAATGC 3 cut(s) 209, 843, 1402
BsnI GGCC 4 cut(s) 5, 205, 793, 997
Bsp1286I GDGCHC 2 cut(s) 228, 1351
Bsp143I GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
BspACI CCGC 2 cut(s) 197, 618
BspANI GGCC 4 cut(s) 5, 205, 793, 997
BspCNI CTCAG 4 cut(s) 595, 660, 1329, 1375
BspMAI CTGCAG 1 cut(s) 653
BspOI GCTAGC 1 cut(s) 1277
BspPI GGATC 2 cut(s) 1108, 1155
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 2 cut(s) 789, 793
BsrI ACTGG 6 cut(s) 263, 441, 709, 1190, 1230, 1356
BssAI RCCGGY 2 cut(s) 789, 793
BssECI CCNNGG 2 cut(s) 217, 756
BssMI GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 4 cut(s) 444, 482, 583, 972
Bst6I CTCTTC 3 cut(s) 14, 912, 1386
BstC8I GCNNGC 6 cut(s) 207, 379, 383, 700, 795, 1275
BstDEI CTNAG 7 cut(s) 358, 386, 603, 668, 1337, 1383, 1435
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 513, 961
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 4 cut(s) 63, 698, 767, 1199
BstKTI GATC 5 cut(s) 595, 1103, 1111, 1150, 1413
BstMAI GTCTC 2 cut(s) 450, 734
BstMBI GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 2 cut(s) 1174, 1360
BstSCI CCNGG 1 cut(s) 756
BstSFI CTRYAG 1 cut(s) 649
BstSLI GKGCMC 2 cut(s) 228, 1351
BstV1I GCAGC 4 cut(s) 75, 685, 869, 871
BstV2I GAAGAC 4 cut(s) 906, 1086, 1241, 1353
BstX2I RGATCY 1 cut(s) 1147
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 1147
BstZI CGGCCG 1 cut(s) 791
BsuRI GGCC 4 cut(s) 5, 205, 793, 997
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 513, 961
BtsI GCAGTG 2 cut(s) 206, 1088
BtsIMutI CAGTG 6 cut(s) 206, 270, 440, 702, 1088, 1349
Cac8I GCNNGC 6 cut(s) 207, 379, 383, 700, 795, 1275
CfoI GCGC 4 cut(s) 63, 698, 767, 1199
Cfr10I RCCGGY 2 cut(s) 789, 793
Cfr13I GGNCC 1 cut(s) 995
Csp6I GTAC 2 cut(s) 813, 1059
CspCI CAANNNNNGTGG 4 cut(s) 342, 377, 742, 777
CviAII CATG 7 cut(s) 83, 548, 865, 1156, 1171, 1212, 1357
CviQI GTAC 2 cut(s) 813, 1059
DdeI CTNAG 7 cut(s) 358, 386, 603, 668, 1337, 1383, 1435
DpnI GATC 5 cut(s) 594, 1102, 1110, 1149, 1412
DpnII GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 3 cut(s) 3, 203, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 3 cut(s) 14, 912, 1386
EarI CTCTTC 3 cut(s) 14, 912, 1386
EclXI CGGCCG 1 cut(s) 791
Eco32I GATATC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 791
Eco57I CTGAAG 3 cut(s) 278, 1098, 1251
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 756
EcoRV GATATC 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 1217
FaeI CATG 7 cut(s) 86, 551, 868, 1159, 1174, 1215, 1360
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 1 cut(s) 600
FatI CATG 7 cut(s) 82, 547, 864, 1155, 1170, 1211, 1356
FauI CCCGC 1 cut(s) 625
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FokI GGATG 2 cut(s) 520, 948
Fsp4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FspBI CTAG 2 cut(s) 329, 1274
FspI TGCGCA 1 cut(s) 697
GlaI GCGC 4 cut(s) 62, 697, 766, 1198
GluI GCNGC 5 cut(s) 64, 197, 674, 858, 885
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 4 cut(s) 5, 205, 793, 997
HapII CCGG 2 cut(s) 790, 794
HhaI GCGC 4 cut(s) 63, 698, 767, 1199
Hin1II CATG 7 cut(s) 86, 551, 868, 1159, 1174, 1215, 1360
Hin6I GCGC 4 cut(s) 61, 696, 765, 1197
HinP1I GCGC 4 cut(s) 61, 696, 765, 1197
HinfI GANTC 6 cut(s) 337, 742, 823, 905, 922, 1322
HpaII CCGG 2 cut(s) 790, 794
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 4 cut(s) 750, 1168, 1184, 1349
Hpy188I TCNGA 5 cut(s) 145, 336, 669, 1270, 1338
Hpy188III TCNNGA 6 cut(s) 317, 602, 827, 851, 1310, 1428
Hpy8I GTNNAC 4 cut(s) 750, 1168, 1184, 1349
HpyAV CCTTC 3 cut(s) 354, 1153, 1324
HpyCH4III ACNGT 4 cut(s) 444, 482, 583, 972
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
HpyF3I CTNAG 7 cut(s) 358, 386, 603, 668, 1337, 1383, 1435
Hsp92II CATG 7 cut(s) 86, 551, 868, 1159, 1174, 1215, 1360
HspAI GCGC 4 cut(s) 61, 696, 765, 1197
KroI GCCGGC 1 cut(s) 793
KroNI GCCGGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
LmnI GCTCC 2 cut(s) 166, 319
Lsp1109I GCAGC 4 cut(s) 75, 685, 869, 871
LweI GCATC 5 cut(s) 116, 178, 970, 1224, 1281
MaeI CTAG 2 cut(s) 329, 1274
MaeIII GTNAC 2 cut(s) 50, 529
MalI GATC 5 cut(s) 594, 1102, 1110, 1149, 1412
MboI GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
MflI RGATCY 1 cut(s) 1147
MhlI GDGCHC 2 cut(s) 228, 1351
MlsI TGGCCA 2 cut(s) 5, 205
MluCI AATT 6 cut(s) 272, 418, 551, 562, 570, 771
MluNI TGGCCA 2 cut(s) 5, 205
MlyI GAGTC 3 cut(s) 736, 817, 1331
MmeI TCCRAC 3 cut(s) 144, 377, 1125
Mox20I TGGCCA 2 cut(s) 5, 205
Mph1103I ATGCAT 1 cut(s) 1217
MroNI GCCGGC 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 2 cut(s) 5, 205
MseI TTAA 6 cut(s) 237, 573, 893, 1034, 1299, 1415
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 2 cut(s) 5, 205
MspA1I CMGCKG 3 cut(s) 860, 1076, 1106
MspI CCGG 2 cut(s) 790, 794
MspR9I CCNGG 1 cut(s) 758
Mva1269I GAATGC 3 cut(s) 209, 843, 1402
MvaI CCWGG 1 cut(s) 758
MwoI GCNNNNNNNGC 4 cut(s) 104, 202, 790, 816
NaeI GCCGGC 1 cut(s) 795
NdeI CATATG 1 cut(s) 133
NdeII GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
NgoMIV GCCGGC 1 cut(s) 793
NheI GCTAGC 1 cut(s) 1273
NlaIII CATG 7 cut(s) 86, 551, 868, 1159, 1174, 1215, 1360
NmuCI GTSAC 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 1217
NspI RCATGY 2 cut(s) 1174, 1360
PciI ACATGT 2 cut(s) 1170, 1356
PctI GAATGC 3 cut(s) 209, 843, 1402
PdiI GCCGGC 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 337, 905, 922
PkrI GCNGC 5 cut(s) 65, 198, 675, 859, 886
PleI GAGTC 3 cut(s) 736, 817, 1330
PpsI GAGTC 3 cut(s) 736, 817, 1330
PscI ACATGT 2 cut(s) 1170, 1356
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspPI GGNCC 1 cut(s) 995
PstI CTGCAG 1 cut(s) 653
PsuI RGATCY 1 cut(s) 1147
PvuII CAGCTG 3 cut(s) 860, 1076, 1106
RsaI GTAC 2 cut(s) 814, 1060
RsaNI GTAC 2 cut(s) 813, 1059
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 6 cut(s) 237, 573, 893, 1034, 1299, 1415
SatI GCNGC 5 cut(s) 64, 197, 674, 858, 885
Sau3AI GATC 5 cut(s) 592, 1100, 1108, 1147, 1410
Sau96I GGNCC 1 cut(s) 995
SchI GAGTC 3 cut(s) 736, 817, 1331
ScrFI CCNGG 1 cut(s) 758
SduI GDGCHC 2 cut(s) 228, 1351
SfaNI GCATC 5 cut(s) 116, 178, 970, 1224, 1281
SfcI CTRYAG 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 1160
Sse9I AATT 6 cut(s) 272, 418, 551, 562, 570, 771
SsiI CCGC 2 cut(s) 197, 618
SspMI CTAG 2 cut(s) 329, 1274
StyD4I CCNGG 1 cut(s) 756
TaaI ACNGT 4 cut(s) 444, 482, 583, 972
TasI AATT 6 cut(s) 272, 418, 551, 562, 570, 771
TatI WGTACW 1 cut(s) 812
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 3 cut(s) 337, 905, 922
Tru1I TTAA 6 cut(s) 237, 573, 893, 1034, 1299, 1415
Tru9I TTAA 6 cut(s) 237, 573, 893, 1034, 1299, 1415
TscAI CASTG 6 cut(s) 206, 270, 447, 709, 1095, 1356
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 4 cut(s) 63, 673, 857, 884
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 8 cut(s) 564, 846, 912, 1029, 1172, 1248, 1296, 1353
TspRI CASTG 6 cut(s) 206, 270, 447, 709, 1095, 1356
VneI GTGCAC 1 cut(s) 1347
XceI RCATGY 2 cut(s) 1174, 1360
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 2 cut(s) 329, 1274
Zsp2I ATGCAT 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.