AT1G16690

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010506
Physical Location & Seq
Forward (+)
5705897 .. 5709563
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16690.1

Sequence Viewer

Length: 1320 bp
ATGAGTAGGCTATCTTTTCGACCCCGTCCACTGGACATACACAAGAAGCTTCCAATTTTAAAGTCTTTTAAAGACTTTGAAGACGAAGATAATCCTTCTTCCATTACTAGAAACTCTCAGTTGCTGCGTATATCTGCCGTAGAGGTTGTTGACAATGAGGTGCAGCCTCCAGTGCCTAGTAAGAAACTGATTTCGGAAATCCCAACACCTCAGTATCTTGTTGTTGATACATATGAAAGAGACTACTCTAGGACTTTTAATCAGCCTGCTTCATATTTACGCGCTAGAGGAGCTCGGGCTGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGACGATGATGACTGGCTTTATGAGTATAATAAGGAGACAATGATTCTCTCACCTGAAATGCTTGAGATCGTTATATTTAAACTAGAGGTCTTGGATCATAAGGCGCGGGAAAGAGCTGGAGTTATTACTCCTACCCTTGGTTTGCCAGTTCCAGTGCTTTTGCAGCCTGATGCTGCTGGTGAGGCGCTGAAATATTTGTCCATCAAATATGGAGTTTTCCACGCTATATACAGTTATTGGAAAAATAAGCGTGAAATATGGCAGAAGCCTATCTTGCGGCGTTTACAGCCTCCACCACCGGTCAATGATACCAATCCGTACAATGTGTTTAGGCCACGGGAGAAAGCTCATAGACTACACGCAAGAAGAATGCAGCAGAGAGAAAACAATGCGCAGTCATTTGAGAAGCTGCGACAGGTCAGGCGCAATCTTGACCAAGCAAAGACCATTCTAGAAGCTCTTATTAAGAGAGAAGAGAAAAAGAGGGATTTCATGGCGAGTGAGGTTAGCCTTCAGAGAATCCAACTGAAATATAAGAATGAAACCGAACTTTTGGAAGATAGTTTGGCTCTGGCTGGGTTTCCACTCTCTACAGCTTACAGATTTGGCTCAAGCGAAGATGAATTCATGGACTCCGATGACCCGACCACCACCCAAACATGTACAAGGCCTTCCTTTACCCCTCATCGTCGTTTCACCGACTCAAACCTCGCTCGAGCTCAAGCCGGGAGCATAAAGCAAGAGGCGAGAAGACTTGGATGGCTCCACAAACTGAATCCTAATGAGCCAGTTATGCTGTTCACGAAAGCATTGGTCCCCGATAAACTGGCTGCTGCGGGAATCATCCCTCCATCAGATGCAAGAAGTGGAAGAGCTCGGTTTCAAGGAAGAATGGGTAGAGGCGGTCGGATTGTATTTGATAGATGGAATCCTCTAAACCAAGCCCACATTAACTGTGGCAACACTCTCTACATAGCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

439

Amino Acids

50.67

Weight (kDa)

9.28

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPL1 PF10513 40 - 141 1.9e-09 Enhancer of polycomb-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 729
AccII CGCG 2 cut(s) 282, 442
AciI CCGC 4 cut(s) 442, 613, 1172, 1239
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 2 cut(s) 311, 959
AcuI CTGAAG 1 cut(s) 833
AfaI GTAC 2 cut(s) 656, 1000
AfiI CCNNNNNNNGG 2 cut(s) 31, 473
AflIII ACRYGT 1 cut(s) 995
AgeI ACCGGT 1 cut(s) 634
AgsI TTSAA 2 cut(s) 80, 1220
Alw21I GWGCWC 3 cut(s) 295, 1057, 1213
Alw26I GTCTC 2 cut(s) 234, 365
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 2 cut(s) 294, 1050
AoxI GGCC 2 cut(s) 668, 1004
ApeKI GCWGC 8 cut(s) 124, 163, 499, 509, 709, 745, 1166, 1169
ApoI RAATTY 2 cut(s) 311, 959
AsiGI ACCGGT 1 cut(s) 634
AspLEI GCGC 5 cut(s) 284, 442, 523, 730, 762
AspS9I GGNCC 1 cut(s) 1150
AsuC2I CCSGG 1 cut(s) 1063
AsuHPI GGTGA 3 cut(s) 378, 527, 1024
AvaI CYCGRG 2 cut(s) 294, 1050
AvaII GGWCC 1 cut(s) 1150
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanII GRGCYC 3 cut(s) 295, 1057, 1213
BarI GAAGNNNNNNTAC 2 cut(s) 991, 1023
BbsI GAAGAC 2 cut(s) 87, 1093
Bbv12I GWGCWC 3 cut(s) 295, 1057, 1213
BbvI GCAGC 8 cut(s) 111, 175, 496, 511, 721, 732, 1153, 1156
BccI CCATC 4 cut(s) 545, 1089, 1195, 1254
BceAI ACGGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 1063
BcoDI GTCTC 2 cut(s) 234, 365
BfaI CTAG 6 cut(s) 108, 177, 249, 285, 419, 788
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 1 cut(s) 524
BisI GCNGC 9 cut(s) 125, 164, 500, 510, 614, 710, 746, 1167, 1170
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 9 cut(s) 126, 165, 501, 511, 615, 711, 747, 1168, 1171
Bme1390I CCNGG 1 cut(s) 1063
Bme18I GGWCC 1 cut(s) 1150
BmeT110I CYCGRG 2 cut(s) 294, 1050
BmgT120I GGNCC 1 cut(s) 1150
BmiI GGNNCC 2 cut(s) 1100, 1152
BmrFI CCNGG 1 cut(s) 1063
BmsI GCATC 2 cut(s) 496, 1183
BpiI GAAGAC 2 cut(s) 87, 1093
BpmI CTGGAG 2 cut(s) 153, 474
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 3 cut(s) 419, 931, 1041
BpuMI CCSGG 1 cut(s) 1063
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 472, 671
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 473
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 7 cut(s) 36, 170, 353, 482, 488, 1124, 1167
Bse8I GATNNNNATC 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 472, 671
BseGI GGATG 2 cut(s) 1100, 1179
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 31, 473
BseMII CTCAG 3 cut(s) 131, 224, 291
BseNI ACTGG 7 cut(s) 36, 170, 353, 482, 488, 1124, 1167
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 8 cut(s) 111, 175, 496, 511, 721, 732, 1153, 1156
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 2 cut(s) 282, 442
Bsh1285I CGRYCG 1 cut(s) 1243
BshFI GGCC 2 cut(s) 670, 1006
BshTI ACCGGT 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 1243
BsiHKAI GWGCWC 3 cut(s) 295, 1057, 1213
BsiHKCI CYCGRG 2 cut(s) 294, 1050
BsiSI CCGG 2 cut(s) 635, 1062
BslFI GGGAC 1 cut(s) 1136
BslI CCNNNNNNNGG 2 cut(s) 31, 473
BsmAI GTCTC 2 cut(s) 234, 365
BsmFI GGGAC 1 cut(s) 1136
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 2 cut(s) 670, 1006
BsoBI CYCGRG 2 cut(s) 294, 1050
Bsp1286I GDGCHC 3 cut(s) 295, 1057, 1213
Bsp1407I TGTACA 1 cut(s) 998
Bsp143I GATC 3 cut(s) 325, 402, 430
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 4 cut(s) 442, 613, 1172, 1239
BspANI GGCC 2 cut(s) 670, 1006
BspCNI CTCAG 3 cut(s) 130, 223, 292
BspFNI CGCG 2 cut(s) 282, 442
BspLI GGNNCC 2 cut(s) 1100, 1152
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 1201
BsrFI RCCGGY 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 998
BsrI ACTGG 7 cut(s) 36, 170, 353, 482, 488, 1124, 1167
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 472, 671
BssMI GATC 3 cut(s) 325, 402, 430
BssT1I CCWWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 569, 1292
Bst6I CTCTTC 2 cut(s) 804, 1201
BstAUI TGTACA 1 cut(s) 998
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 117, 210, 300
BstDSI CCRYGG 1 cut(s) 671
BstF5I GGATG 2 cut(s) 1100, 1179
BstFNI CGCG 2 cut(s) 282, 442
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 5 cut(s) 284, 442, 523, 730, 762
BstKTI GATC 3 cut(s) 328, 405, 433
BstMAI GTCTC 2 cut(s) 234, 365
BstMBI GATC 3 cut(s) 325, 402, 430
BstMCI CGRYCG 1 cut(s) 1243
BstMWI GCNNNNNNNGC 7 cut(s) 172, 290, 499, 518, 610, 622, 1129
BstNSI RCATGY 1 cut(s) 999
BstSCI CCNGG 1 cut(s) 1061
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 2 cut(s) 282, 442
BstV1I GCAGC 8 cut(s) 111, 175, 496, 511, 721, 732, 1153, 1156
BstV2I GAAGAC 2 cut(s) 87, 1093
BsuRI GGCC 2 cut(s) 670, 1006
BtgI CCRYGG 1 cut(s) 671
BtsCI GGATG 2 cut(s) 1100, 1179
BtsIMutI CAGTG 3 cut(s) 29, 177, 495
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 5 cut(s) 284, 442, 523, 730, 762
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 1 cut(s) 1150
Csp6I GTAC 2 cut(s) 655, 999
CspAI ACCGGT 1 cut(s) 634
CviAII CATG 3 cut(s) 829, 964, 996
CviQI GTAC 2 cut(s) 655, 999
DdeI CTNAG 3 cut(s) 117, 210, 300
DpnI GATC 3 cut(s) 327, 404, 432
DpnII GATC 3 cut(s) 325, 402, 430
DraI TTTAAA 3 cut(s) 60, 70, 415
Eam1104I CTCTTC 2 cut(s) 804, 1201
EarI CTCTTC 2 cut(s) 804, 1201
Ecl136II GAGCTC 3 cut(s) 293, 1055, 1211
Eco130I CCWWGG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 1006
Eco24I GRGCYC 3 cut(s) 295, 1057, 1213
Eco47I GGWCC 1 cut(s) 1150
Eco53kI GAGCTC 3 cut(s) 293, 1055, 1211
Eco57I CTGAAG 1 cut(s) 833
Eco88I CYCGRG 2 cut(s) 294, 1050
EcoICRI GAGCTC 3 cut(s) 293, 1055, 1211
EcoRI GAATTC 1 cut(s) 959
EcoT14I CCWWGG 1 cut(s) 472
EcoT38I GRGCYC 3 cut(s) 295, 1057, 1213
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 3 cut(s) 832, 967, 999
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 1 cut(s) 1136
FatI CATG 3 cut(s) 828, 963, 995
FauI CCCGC 2 cut(s) 435, 1165
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 9 cut(s) 125, 164, 500, 510, 614, 710, 746, 1167, 1170
FokI GGATG 2 cut(s) 1107, 1166
FriOI GRGCYC 3 cut(s) 295, 1057, 1213
Fsp4HI GCNGC 9 cut(s) 125, 164, 500, 510, 614, 710, 746, 1167, 1170
FspBI CTAG 6 cut(s) 108, 177, 249, 285, 419, 788
FspI TGCGCA 1 cut(s) 729
GlaI GCGC 5 cut(s) 283, 441, 522, 729, 761
GluI GCNGC 9 cut(s) 125, 164, 500, 510, 614, 710, 746, 1167, 1170
GsaI CCCAGC 1 cut(s) 915
GsuI CTGGAG 2 cut(s) 153, 474
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 2 cut(s) 670, 1006
HapII CCGG 2 cut(s) 635, 1062
HhaI GCGC 5 cut(s) 284, 442, 523, 730, 762
Hin1II CATG 3 cut(s) 832, 967, 999
Hin6I GCGC 5 cut(s) 282, 440, 521, 728, 760
HinP1I GCGC 5 cut(s) 282, 440, 521, 728, 760
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 7 cut(s) 379, 855, 968, 1037, 1111, 1176, 1264
HpaII CCGG 2 cut(s) 635, 1062
HphI GGTGA 3 cut(s) 378, 527, 1024
Hpy166II GTNNAC 4 cut(s) 29, 151, 620, 1137
Hpy188I TCNGA 5 cut(s) 196, 852, 973, 1192, 1245
Hpy188III TCNNGA 4 cut(s) 329, 767, 788, 1138
Hpy8I GTNNAC 4 cut(s) 29, 151, 620, 1137
Hpy99I CGWCG 1 cut(s) 1029
HpyAV CCTTC 3 cut(s) 105, 857, 1017
HpyCH4III ACNGT 2 cut(s) 569, 1292
HpyCH4V TGCA 4 cut(s) 163, 499, 709, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 172, 290, 499, 518, 610, 622, 1129
HpyF3I CTNAG 3 cut(s) 117, 210, 300
Hsp92II CATG 3 cut(s) 832, 967, 999
HspAI GCGC 5 cut(s) 282, 440, 521, 728, 760
Kzo9I GATC 3 cut(s) 325, 402, 430
LguI GCTCTTC 1 cut(s) 1201
LmnI GCTCC 3 cut(s) 290, 1065, 1104
Lsp1109I GCAGC 8 cut(s) 111, 175, 496, 511, 721, 732, 1153, 1156
LweI GCATC 2 cut(s) 496, 1183
MaeI CTAG 6 cut(s) 108, 177, 249, 285, 419, 788
MalI GATC 3 cut(s) 327, 404, 432
MboI GATC 3 cut(s) 325, 402, 430
MhlI GDGCHC 3 cut(s) 295, 1057, 1213
MluCI AATT 3 cut(s) 54, 311, 959
MlyI GAGTC 2 cut(s) 962, 1031
MmeI TCCRAC 2 cut(s) 883, 1223
MseI TTAA 6 cut(s) 59, 69, 258, 414, 801, 1287
MspI CCGG 2 cut(s) 635, 1062
MspR9I CCNGG 1 cut(s) 1063
Mva1269I GAATGC 1 cut(s) 711
MvnI CGCG 2 cut(s) 282, 442
MwoI GCNNNNNNNGC 7 cut(s) 172, 290, 499, 518, 610, 622, 1129
NciI CCSGG 1 cut(s) 1063
NdeI CATATG 1 cut(s) 232
NdeII GATC 3 cut(s) 325, 402, 430
NlaIII CATG 3 cut(s) 832, 967, 999
NlaIV GGNNCC 2 cut(s) 1100, 1152
NsbI TGCGCA 1 cut(s) 729
NspI RCATGY 1 cut(s) 999
PaeR7I CTCGAG 1 cut(s) 1050
PceI AGGCCT 1 cut(s) 1006
PciI ACATGT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 1201
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 5 cut(s) 379, 855, 1111, 1176, 1264
PflFI GACNNNGTC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 634
PkrI GCNGC 9 cut(s) 126, 165, 501, 511, 615, 711, 747, 1168, 1171
PleI GAGTC 2 cut(s) 962, 1031
PpsI GAGTC 2 cut(s) 962, 1031
PscI ACATGT 1 cut(s) 995
Psp124BI GAGCTC 3 cut(s) 295, 1057, 1213
PspFI CCCAGC 1 cut(s) 911
PspN4I GGNNCC 2 cut(s) 1100, 1152
PspPI GGNCC 1 cut(s) 1150
PspXI VCTCGAGB 1 cut(s) 1050
PstNI CAGNNNCTG 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 24
RsaI GTAC 2 cut(s) 656, 1000
RsaNI GTAC 2 cut(s) 655, 999
SacI GAGCTC 3 cut(s) 295, 1057, 1213
SapI GCTCTTC 1 cut(s) 1201
SaqAI TTAA 6 cut(s) 59, 69, 258, 414, 801, 1287
SatI GCNGC 9 cut(s) 125, 164, 500, 510, 614, 710, 746, 1167, 1170
Sau3AI GATC 3 cut(s) 325, 402, 430
Sau96I GGNCC 1 cut(s) 1150
SchI GAGTC 2 cut(s) 962, 1031
ScrFI CCNGG 1 cut(s) 1063
SduI GDGCHC 3 cut(s) 295, 1057, 1213
SfaNI GCATC 2 cut(s) 496, 1183
SfcI CTRYAG 1 cut(s) 927
Sfr274I CTCGAG 1 cut(s) 1050
SinI GGWCC 1 cut(s) 1150
SlaI CTCGAG 1 cut(s) 1050
SmlI CTYRAG 4 cut(s) 398, 946, 1050, 1056
SmoI CTYRAG 4 cut(s) 398, 946, 1050, 1056
Sse9I AATT 3 cut(s) 54, 311, 959
SseBI AGGCCT 1 cut(s) 1006
SsiI CCGC 4 cut(s) 442, 613, 1172, 1239
SspI AATATT 1 cut(s) 530
SspMI CTAG 6 cut(s) 108, 177, 249, 285, 419, 788
SstI GAGCTC 3 cut(s) 295, 1057, 1213
StuI AGGCCT 1 cut(s) 1006
StyD4I CCNGG 1 cut(s) 1061
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 569, 1292
TaqI TCGA 2 cut(s) 19, 1051
TasI AATT 3 cut(s) 54, 311, 959
TatI WGTACW 1 cut(s) 998
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 5 cut(s) 379, 855, 1111, 1176, 1264
Tru1I TTAA 6 cut(s) 59, 69, 258, 414, 801, 1287
Tru9I TTAA 6 cut(s) 59, 69, 258, 414, 801, 1287
TscAI CASTG 3 cut(s) 36, 177, 495
TseI GCWGC 8 cut(s) 124, 163, 499, 509, 709, 745, 1166, 1169
TspDTI ATGAA 6 cut(s) 249, 261, 817, 891, 952, 972
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 3 cut(s) 36, 177, 495
Tth111I GACNNNGTC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 1150
XapI RAATTY 2 cut(s) 311, 959
XbaI TCTAGA 1 cut(s) 787
XceI RCATGY 1 cut(s) 999
XcmI CCANNNNNNNNNTGG 1 cut(s) 1289
XhoI CTCGAG 1 cut(s) 1050
XspI CTAG 6 cut(s) 108, 177, 249, 285, 419, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.