Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004032.1

Orthogroup ID

OG0010506

Physical Location & Seq

Genomic Coordinates Reverse (-)

28014 .. 30973

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004032.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgagtaggctctcattcaggcctcggcccctcgacatccacaagaggctccccgtcgtcaagtctttcaaggacttcgaagacgatgaagccgcccccacctccacccgcaattctcagctcctccgcctctccgccgtcgactcctcctccgcctccgccaccgaaatcgaggtccaccctccccccgccaagaagctagcccctgaaatcccgactcctcagtttgttgttgttgatacttatgagagagactactctcgcacttttgcccaacccaattcctatctccgcgccagaggagcccgggccgagctcggagagtttgtggagtatgatttggataatgaggatgaggattggcttgaagagttcaatggtgaggaggaaattcttcctgccgaaaagcttgagagtcttattttcaagctggaggttttggatcataaggctcgggagagagcaggagttataacccctactcttgcttcacctatccctgtacttctacaacttgatgttgctactgaggctctacatggtcagcccctcagatatgctgtcatccggtctgtttatgagtattggagagataagcgtgaaagatggcagaagcctatcttgcgacgtttgcaggttaggcgcaacctggaccaagccaagaccattgtggaggctttaatcaagagagaagaaaaaaagagagcagtcatggaggccgaagtggagcttcaagtaaatcaaatgaagtacaagcatgagacactgctcctggaagatagtttagtccttcctggttttccacccatgtcttccaagtttgtttcaagtgaggaggaaaatgttgattcagatgactttgaaaacagtcggcctcgtacacgaccttctgcactgcctaatccgcctttaccagaccccaacttgatcacgggaaccatgaagcaagatttcaggcgtcggcatgcacctcaagggtggcttcataaaatggatcccctcgagccagttttgttatttacaaaacccttagttccagagaagttggcagcttcaggcattgtaccaccatcagattcttcaacgaaaaatggagtaaccacagcaccttttaagttccgcggaagaattggccgagggggccgattaatatttgatagatggaacccattgatgcacactccaatcgactttgggaattcatattatatacctcctaaacctcgaccaacaacatataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

414

Amino Acids

47.43

Weight (kDa)

6.5

Isoelectric Point (pI)

63.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16690 AT1G79020
fragaria_vesca	FvH4_6g36310
malus_domestica	MD09G1170200.v1.1 MD17G1156900.v1.1
prunus_persica	Prupe.3G028400_v2.0.a1 Prupe.3G028400_v2.0.a1
pyrus_communis	pycom09g08760 pycom17g15030
rosa_chinensis	RchiOBHm_Chr2g0148321
rosa_laevigata	RLG00000020336
rosa_multiflora	Rmu_co8435899.1_g000001 Rmu_sc0004032.1_g000012 Rmu_sc0011136.1_g000019
rosa_roxburghii	Rroxscaffold_2G00098900
rosa_rugosa	Rorug02G0405600
rosa_samantha	Rh2AG464300 Rh2BG477300 Rh2CG451000 Rh2DG486100
rosa_wichuraiana	Rw2G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	294, 1122
AclWI	GGATC	3 cut(s)	450, 989, 1002
AcoI	YGGCCR	1 cut(s)	1132
AcsI	RAATTY	2 cut(s)	390, 1198
AcuI	CTGAAG	1 cut(s)	1038
AcyI	GRCGYC	1 cut(s)	958
AfaI	GTAC	4 cut(s)	504, 752, 880, 1065
AgsI	TTSAA	8 cut(s)	70, 368, 376, 427, 734, 828, 863, 1083
AjnI	CCWGG	3 cut(s)	648, 771, 793
AluBI	AGCT	7 cut(s)	121, 199, 316, 409, 430, 730, 1052
AluI	AGCT	7 cut(s)	121, 199, 316, 409, 430, 730, 1052
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	246, 755
AlwI	GGATC	3 cut(s)	450, 989, 1002
Ama87I	CYCGRG	3 cut(s)	306, 453, 1001
AoxI	GGCC	7 cut(s)	20, 26, 309, 717, 872, 1132, 1141
ApeKI	GCWGC	1 cut(s)	1049
ApoI	RAATTY	2 cut(s)	390, 1198
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AseI	ATTAAT	1 cut(s)	1148
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	296, 645
AspS9I	GGNCC	5 cut(s)	27, 175, 309, 652, 1141
AsuC2I	CCSGG	2 cut(s)	307, 308
AsuHPI	GGTGA	2 cut(s)	392, 483
AsuII	TTCGAA	1 cut(s)	78
AsuNHI	GCTAGC	1 cut(s)	199
AvaI	CYCGRG	3 cut(s)	306, 453, 1001
AvaII	GGWCC	2 cut(s)	175, 652
BamHI	GGATCC	1 cut(s)	994
BanII	GRGCYC	2 cut(s)	307, 318
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbsI	GAAGAC	2 cut(s)	87, 804
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	1061
BccI	CCATC	3 cut(s)	600, 1078, 1155
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	3 cut(s)	650, 773, 795
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	2 cut(s)	307, 308
BcoDI	GTCTC	2 cut(s)	246, 755
BfaI	CTAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	625
BglI	GCCNNNNNGGC	1 cut(s)	1140
BisI	GCNGC	2 cut(s)	93, 1050
BlsI	GCNGC	2 cut(s)	94, 1051
Bme1390I	CCNGG	5 cut(s)	307, 308, 650, 773, 795
Bme18I	GGWCC	2 cut(s)	175, 652
BmeT110I	CYCGRG	3 cut(s)	306, 453, 1001
BmgT120I	GGNCC	5 cut(s)	27, 175, 309, 652, 1141
BmiI	GGNNCC	7 cut(s)	29, 50, 304, 937, 996, 1142, 1166
BmrFI	CCNGG	5 cut(s)	307, 308, 650, 773, 795
BmsI	GCATC	1 cut(s)	1164
BmtI	GCTAGC	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	87, 804
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	431, 957
BpuMI	CCSGG	2 cut(s)	307, 308
BsaHI	GRCGYC	1 cut(s)	958
BsaJI	CCNNGG	4 cut(s)	23, 306, 1120, 1135
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 312, 342
Bse1I	ACTGG	1 cut(s)	1007
BseBI	CCWGG	3 cut(s)	650, 773, 795
BseDI	CCNNGG	4 cut(s)	23, 306, 1120, 1135
BseGI	GGATG	3 cut(s)	36, 358, 564
BseMII	CTCAG	4 cut(s)	131, 236, 519, 565
BseNI	ACTGG	1 cut(s)	1007
BseRI	GAGGAG	7 cut(s)	113, 136, 139, 210, 315, 398, 848
BseXI	GCAGC	1 cut(s)	1061
BsgI	GTGCAG	1 cut(s)	876
Bsh1236I	CGCG	2 cut(s)	294, 1122
BshFI	GGCC	7 cut(s)	22, 28, 311, 719, 874, 1134, 1143
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	3 cut(s)	306, 453, 1001
BsiSI	CCGG	2 cut(s)	307, 568
BsmAI	GTCTC	2 cut(s)	246, 755
BsnI	GGCC	7 cut(s)	22, 28, 311, 719, 874, 1134, 1143
BsoBI	CYCGRG	3 cut(s)	306, 453, 1001
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	307, 318
Bsp143I	GATC	3 cut(s)	442, 927, 994
BspANI	GGCC	7 cut(s)	22, 28, 311, 719, 874, 1134, 1143
BspCNI	CTCAG	4 cut(s)	130, 235, 520, 564
BspFNI	CGCG	2 cut(s)	294, 1122
BspLI	GGNNCC	7 cut(s)	29, 50, 304, 937, 996, 1142, 1166
BspMI	ACCTGC	1 cut(s)	625
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	450, 989, 1002
BspT104I	TTCGAA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	1007
BssECI	CCNNGG	4 cut(s)	23, 306, 1120, 1135
BssMI	GATC	3 cut(s)	442, 927, 994
BssNI	GRCGYC	1 cut(s)	958
Bst2UI	CCWGG	3 cut(s)	650, 773, 795
Bst4CI	ACNGT	1 cut(s)	869
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	201, 966
BstDEI	CTNAG	5 cut(s)	117, 222, 528, 551, 1030
BstDSI	CCRYGG	1 cut(s)	1120
BstF5I	GGATG	3 cut(s)	36, 358, 564
BstFNI	CGCG	2 cut(s)	294, 1122
BstHHI	GCGC	2 cut(s)	296, 645
BstKTI	GATC	3 cut(s)	445, 930, 997
BstMAI	GTCTC	2 cut(s)	246, 755
BstMBI	GATC	3 cut(s)	442, 927, 994
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 530, 622, 631, 640, 904, 1140
BstNI	CCWGG	3 cut(s)	650, 773, 795
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	5 cut(s)	305, 306, 648, 771, 793
BstUI	CGCG	2 cut(s)	294, 1122
BstV1I	GCAGC	1 cut(s)	1061
BstV2I	GAAGAC	2 cut(s)	87, 804
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuRI	GGCC	7 cut(s)	22, 28, 311, 719, 874, 1134, 1143
BtgI	CCRYGG	1 cut(s)	1120
BtsCI	GGATG	3 cut(s)	36, 358, 564
BtsI	GCAGTG	2 cut(s)	764, 893
BtsIMutI	CAGTG	2 cut(s)	764, 893
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	201, 966
CfoI	GCGC	2 cut(s)	296, 645
Cfr13I	GGNCC	5 cut(s)	27, 175, 309, 652, 1141
Cfr42I	CCGCGG	1 cut(s)	1123
Cfr9I	CCCGGG	1 cut(s)	306
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	4 cut(s)	503, 751, 879, 1064
CviAII	CATG	6 cut(s)	539, 712, 758, 808, 940, 965
CviQI	GTAC	4 cut(s)	503, 751, 879, 1064
DdeI	CTNAG	5 cut(s)	117, 222, 528, 551, 1030
DpnI	GATC	3 cut(s)	444, 929, 996
DpnII	GATC	3 cut(s)	442, 927, 994
EaeI	YGGCCR	1 cut(s)	1132
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	5 cut(s)	116, 124, 142, 148, 894
Ecl136II	GAGCTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	307, 318
Eco47I	GGWCC	2 cut(s)	175, 652
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	1038
Eco88I	CYCGRG	3 cut(s)	306, 453, 1001
EcoICRI	GAGCTC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	1198
EcoRII	CCWGG	3 cut(s)	648, 771, 793
EcoT38I	GRGCYC	2 cut(s)	307, 318
FaeI	CATG	6 cut(s)	542, 715, 761, 811, 943, 968
FalI	AAGNNNNNCTT	6 cut(s)	605, 637, 714, 746, 966, 998
FatI	CATG	6 cut(s)	538, 711, 757, 807, 939, 964
FauI	CCCGC	2 cut(s)	116, 196
FbaI	TGATCA	1 cut(s)	927
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	93, 1050
FokI	GGATG	3 cut(s)	23, 365, 551
FriOI	GRGCYC	2 cut(s)	307, 318
Fsp4HI	GCNGC	2 cut(s)	93, 1050
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	2 cut(s)	295, 644
GluI	GCNGC	2 cut(s)	93, 1050
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	7 cut(s)	22, 28, 311, 719, 874, 1134, 1143
HapII	CCGG	2 cut(s)	307, 568
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	2 cut(s)	296, 645
Hin1I	GRCGYC	1 cut(s)	958
Hin1II	CATG	6 cut(s)	542, 715, 761, 811, 943, 968
Hin6I	GCGC	2 cut(s)	294, 643
HinP1I	GCGC	2 cut(s)	294, 643
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	5 cut(s)	143, 217, 415, 848, 1076
HpaII	CCGG	2 cut(s)	307, 568
HphI	GGTGA	2 cut(s)	392, 483
Hpy166II	GTNNAC	3 cut(s)	142, 178, 881
Hpy188I	TCNGA	4 cut(s)	320, 554, 853, 1075
Hpy188III	TCNNGA	4 cut(s)	214, 455, 685, 1037
Hpy8I	GTNNAC	3 cut(s)	142, 178, 881
Hpy99I	CGWCG	4 cut(s)	59, 143, 630, 963
HpyAV	CCTTC	2 cut(s)	800, 897
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	4 cut(s)	634, 893, 968, 1177
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 530, 622, 631, 640, 904, 1140
HpyF3I	CTNAG	5 cut(s)	117, 222, 528, 551, 1030
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	958
Hsp92II	CATG	6 cut(s)	542, 715, 761, 811, 943, 968
HspAI	GCGC	2 cut(s)	294, 643
Ksp22I	TGATCA	1 cut(s)	927
KspI	CCGCGG	1 cut(s)	1123
Kzo9I	GATC	3 cut(s)	442, 927, 994
LmnI	GCTCC	5 cut(s)	54, 126, 302, 727, 774
Lsp1109I	GCAGC	1 cut(s)	1061
LweI	GCATC	1 cut(s)	1164
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	1096
MalI	GATC	3 cut(s)	444, 929, 996
MboI	GATC	3 cut(s)	442, 927, 994
MboII	GAAGA	8 cut(s)	92, 380, 386, 704, 788, 804, 1071, 1137
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	2 cut(s)	307, 318
MluCI	AATT	6 cut(s)	112, 280, 390, 1128, 1198, 1240
MlyI	GAGTC	3 cut(s)	137, 211, 424
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	3 cut(s)	680, 1113, 1148
MspA1I	CMGCKG	1 cut(s)	1122
MspI	CCGG	2 cut(s)	307, 568
MspR9I	CCNGG	5 cut(s)	307, 308, 650, 773, 795
MvaI	CCWGG	3 cut(s)	650, 773, 795
MvnI	CGCG	2 cut(s)	294, 1122
MwoI	GCNNNNNNNGC	7 cut(s)	302, 530, 622, 631, 640, 904, 1140
NciI	CCSGG	2 cut(s)	307, 308
NdeII	GATC	3 cut(s)	442, 927, 994
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	6 cut(s)	542, 715, 761, 811, 943, 968
NlaIV	GGNNCC	7 cut(s)	29, 50, 304, 937, 996, 1142, 1166
NmeAIII	GCCGAG	3 cut(s)	4, 337, 1160
NspI	RCATGY	1 cut(s)	968
NspV	TTCGAA	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	968
PaeR7I	CTCGAG	1 cut(s)	1001
PceI	AGGCCT	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	848, 1076
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	2 cut(s)	94, 1051
PleI	GAGTC	3 cut(s)	137, 211, 423
PpsI	GAGTC	3 cut(s)	137, 211, 423
PshBI	ATTAAT	1 cut(s)	1148
PsiI	TTATAA	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	648, 771, 793
PspGI	CCWGG	3 cut(s)	648, 771, 793
PspN4I	GGNNCC	7 cut(s)	29, 50, 304, 937, 996, 1142, 1166
PspPI	GGNCC	5 cut(s)	27, 175, 309, 652, 1141
PspXI	VCTCGAGB	1 cut(s)	1001
PsuI	RGATCY	1 cut(s)	994
RsaI	GTAC	4 cut(s)	504, 752, 880, 1065
RsaNI	GTAC	4 cut(s)	503, 751, 879, 1064
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	1123
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	680, 1113, 1148
SatI	GCNGC	2 cut(s)	93, 1050
Sau3AI	GATC	3 cut(s)	442, 927, 994
Sau96I	GGNCC	5 cut(s)	27, 175, 309, 652, 1141
SchI	GAGTC	3 cut(s)	137, 211, 424
ScrFI	CCNGG	5 cut(s)	307, 308, 650, 773, 795
SduI	GDGCHC	2 cut(s)	307, 318
SfaNI	GCATC	1 cut(s)	1164
SfiI	GGCCNNNNNGGCC	1 cut(s)	1140
Sfr274I	CTCGAG	1 cut(s)	1001
Sfr303I	CCGCGG	1 cut(s)	1123
SfuI	TTCGAA	1 cut(s)	78
SgrBI	CCGCGG	1 cut(s)	1123
SinI	GGWCC	2 cut(s)	175, 652
SlaI	CTCGAG	1 cut(s)	1001
SmaI	CCCGGG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	410, 972, 1001
SmoI	CTYRAG	3 cut(s)	410, 972, 1001
SphI	GCATGC	1 cut(s)	968
SrfI	GCCCGGGC	1 cut(s)	308
Sse9I	AATT	6 cut(s)	112, 280, 390, 1128, 1198, 1240
SseBI	AGGCCT	1 cut(s)	22
SspI	AATATT	1 cut(s)	1152
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	5 cut(s)	305, 306, 648, 771, 793
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	7 cut(s)	33, 78, 141, 171, 1002, 1188, 1225
TasI	AATT	6 cut(s)	112, 280, 390, 1128, 1198, 1240
TatI	WGTACW	2 cut(s)	502, 750
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	848, 1076
Tru1I	TTAA	3 cut(s)	680, 1113, 1148
Tru9I	TTAA	3 cut(s)	680, 1113, 1148
TscAI	CASTG	2 cut(s)	771, 900
TseI	GCWGC	1 cut(s)	1049
TspDTI	ATGAA	5 cut(s)	102, 761, 956, 974, 1191
TspMI	CCCGGG	1 cut(s)	306
TspRI	CASTG	2 cut(s)	771, 900
VpaK11BI	GGWCC	2 cut(s)	175, 652
VspI	ATTAAT	1 cut(s)	1148
XapI	RAATTY	2 cut(s)	390, 1198
XceI	RCATGY	1 cut(s)	968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XhoI	CTCGAG	1 cut(s)	1001
XmaI	CCCGGG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.