Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010506

Physical Location & Seq

Genomic Coordinates Reverse (-)

6852524 .. 6855460

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGGATGAGGACTGGCTGTATGAGTTCAACAAAGAGAGGAAGATTCTTGCACCTGAAAAGCTTGAGAGTCTTCTTTTTAAGTTGGAGGTTTTGGATCGATAAGGCACGAGAAAGAGCAGGAGTTATAACTTCTACTCTTGCTTCACCAATCCCTGTACTTGTACAACTTGATGTTGCTAGTGAGGCTTTACAAGCTCAGTCTCTCAGATATGCTGTTATCCAGTCTGTTTATAATTATTGGAAAGAGAAGCGTGAACGTTGGCAGAAGCCTGTTTTGCGGCGTTTGCAGCCTCCTCCACCAGTTAATGACACCAACCCGTACAATGTCTTTAGACCAAGGGAGAAAACCCACAGACTGCACACAAGAAGGATGCAAAGAAGGGAAAATAATGTGCAGTCATTTGAAAAGCTTCGCCAGGTTAGGCGCAACCTGGAGCAAGCCAAGACCATAATAGAGGCTTTAATCAAGAGAGAAGAGAAAAAGAGGGAAGTCATGGAGAATGAAGTTAGTCTTCAAATAATCCAAATGAAATACAAGCATGAAACTGAGCTCCTGGAAGATAGTTTGGCCCTTCCTGGATTTCAACCTGTATCTTGCAAATTTGGTTCAAGTGAGGACGAATTTGTTGATTCGGATGATGTTTCAAACAGCCAGCCCCGTATGCGACCTCCTGCAATACCTAATCCACCTTTAACAGATTCAAATTTAGTTGTGGTTCCTACAGGAACCATGAAGCAAGAGTTCAGGCGGCGGCATGCACCACAAGGGTGGCTTCATAAAATGGATCCCAGCTTGAGCCAGTTTTGTTATTTACAAGACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

276

Amino Acids

32.43

Weight (kDa)

10.03

Isoelectric Point (pI)

72.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16690 AT1G79020
fragaria_vesca	FvH4_6g36310
malus_domestica	MD09G1170200.v1.1 MD17G1156900.v1.1
prunus_persica	Prupe.3G028400_v2.0.a1 Prupe.3G028400_v2.0.a1
pyrus_communis	pycom09g08760 pycom17g15030
rosa_chinensis	RchiOBHm_Chr2g0148321
rosa_laevigata	RLG00000020336
rosa_multiflora	Rmu_co8435899.1_g000001 Rmu_sc0004032.1_g000012 Rmu_sc0011136.1_g000019
rosa_roxburghii	Rroxscaffold_2G00098900
rosa_rugosa	Rorug02G0405600
rosa_samantha	Rh2AG464300 Rh2BG477300 Rh2CG451000 Rh2DG486100
rosa_wichuraiana	Rw2G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	128, 234
AciI	CCGC	3 cut(s)	280, 751, 754
AclI	AACGTT	1 cut(s)	259
AclWI	GGATC	3 cut(s)	104, 782, 795
AcsI	RAATTY	3 cut(s)	602, 623, 706
AfaI	GTAC	3 cut(s)	159, 165, 323
AgsI	TTSAA	7 cut(s)	30, 407, 518, 587, 612, 648, 705
AjnI	CCWGG	4 cut(s)	417, 432, 555, 577
AleI	CACNNNNGTG	1 cut(s)	769
AluBI	AGCT	5 cut(s)	63, 197, 412, 553, 795
AluI	AGCT	5 cut(s)	63, 197, 412, 553, 795
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	104, 782, 795
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	3 cut(s)	602, 623, 706
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	555
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	2 cut(s)	64, 506
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	301
BciT130I	CCWGG	4 cut(s)	419, 434, 557, 579
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	180, 826
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	4 cut(s)	281, 290, 752, 755
BlsI	GCNGC	4 cut(s)	282, 291, 753, 756
Bme1390I	CCNGG	4 cut(s)	419, 434, 557, 579
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	3 cut(s)	720, 730, 789
BmrFI	CCNGG	4 cut(s)	419, 434, 557, 579
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	64, 506
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	2 cut(s)	85, 817
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	338
Bse1I	ACTGG	4 cut(s)	19, 223, 302, 802
BseBI	CCWGG	4 cut(s)	419, 434, 557, 579
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	3 cut(s)	12, 378, 643
BseMII	CTCAG	3 cut(s)	212, 220, 540
BseNI	ACTGG	4 cut(s)	19, 223, 302, 802
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	791
BsgI	GTGCAG	2 cut(s)	344, 416
BshFI	GGCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	555
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	96, 787
BspACI	CCGC	3 cut(s)	280, 751, 754
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	3 cut(s)	211, 219, 541
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	720, 730, 789
BspPI	GGATC	3 cut(s)	104, 782, 795
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	4 cut(s)	19, 223, 302, 802
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	96, 787
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	4 cut(s)	419, 434, 557, 579
Bst6I	CTCTTC	1 cut(s)	471
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	441, 656, 759
BstDEI	CTNAG	3 cut(s)	198, 206, 549
BstF5I	GGATG	3 cut(s)	12, 378, 643
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	99, 790
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	96, 787
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 194, 277, 286, 289, 664
BstNI	CCWGG	4 cut(s)	419, 434, 557, 579
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	417, 432, 555, 577
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	2 cut(s)	64, 506
BstX2I	RGATCY	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	572
BsuTUI	ATCGAT	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	12, 378, 643
Cac8I	GCNNGC	3 cut(s)	441, 656, 759
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	571
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	158, 164, 322
CviAII	CATG	4 cut(s)	496, 542, 733, 758
CviQI	GTAC	3 cut(s)	158, 164, 322
DdeI	CTNAG	3 cut(s)	198, 206, 549
DpnI	GATC	2 cut(s)	98, 789
DpnII	GATC	2 cut(s)	96, 787
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	4 cut(s)	417, 432, 555, 577
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	4 cut(s)	499, 545, 736, 761
FalI	AAGNNNNNCTT	4 cut(s)	498, 530, 759, 791
FatI	CATG	4 cut(s)	495, 541, 732, 757
Fnu4HI	GCNGC	4 cut(s)	281, 290, 752, 755
FokI	GGATG	3 cut(s)	19, 385, 650
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	4 cut(s)	281, 290, 752, 755
FspBI	CTAG	2 cut(s)	180, 826
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	4 cut(s)	281, 290, 752, 755
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	499, 545, 736, 761
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	61, 410
HinfI	GANTC	4 cut(s)	45, 69, 632, 701
HphI	GGTGA	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	209, 637
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	363, 375, 584
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	8 cut(s)	52, 289, 361, 376, 397, 600, 677, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 194, 277, 286, 289, 664
HpyF3I	CTNAG	3 cut(s)	198, 206, 549
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	499, 545, 736, 761
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	96, 787
LmnI	GCTCC	2 cut(s)	436, 558
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	2 cut(s)	180, 826
MaeII	ACGT	1 cut(s)	259
MalI	GATC	2 cut(s)	98, 789
MboI	GATC	2 cut(s)	96, 787
MboII	GAAGA	5 cut(s)	54, 64, 488, 506, 572
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	4 cut(s)	235, 602, 623, 706
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	4 cut(s)	80, 306, 464, 695
MslI	CAYNNNNRTG	1 cut(s)	769
MspR9I	CCNGG	4 cut(s)	419, 434, 557, 579
MvaI	CCWGG	4 cut(s)	419, 434, 557, 579
MwoI	GCNNNNNNNGC	6 cut(s)	185, 194, 277, 286, 289, 664
NdeII	GATC	2 cut(s)	96, 787
NlaIII	CATG	4 cut(s)	499, 545, 736, 761
NlaIV	GGNNCC	3 cut(s)	720, 730, 789
NspI	RCATGY	1 cut(s)	761
OliI	CACNNNNGTG	1 cut(s)	769
PaeI	GCATGC	1 cut(s)	761
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	45, 632, 701
PfoI	TCCNGGA	2 cut(s)	555, 577
PkrI	GCNGC	4 cut(s)	282, 291, 753, 756
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PsiI	TTATAA	2 cut(s)	128, 234
Psp124BI	GAGCTC	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	259
Psp6I	CCWGG	4 cut(s)	417, 432, 555, 577
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	4 cut(s)	417, 432, 555, 577
PspN4I	GGNNCC	3 cut(s)	720, 730, 789
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	3 cut(s)	159, 165, 323
RsaNI	GTAC	3 cut(s)	158, 164, 322
RseI	CAYNNNNRTG	1 cut(s)	769
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	80, 306, 464, 695
SatI	GCNGC	4 cut(s)	281, 290, 752, 755
Sau3AI	GATC	2 cut(s)	96, 787
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	4 cut(s)	419, 434, 557, 579
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	769
SmlI	CTYRAG	2 cut(s)	64, 796
SmoI	CTYRAG	2 cut(s)	64, 796
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	4 cut(s)	235, 602, 623, 706
SsiI	CCGC	3 cut(s)	280, 751, 754
SspMI	CTAG	2 cut(s)	180, 826
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	4 cut(s)	417, 432, 555, 577
StyI	CCWWGG	1 cut(s)	338
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	235, 602, 623, 706
TatI	WGTACW	2 cut(s)	157, 163
TauI	GCSGC	3 cut(s)	283, 754, 757
TfiI	GAWTC	3 cut(s)	45, 632, 701
Tru1I	TTAA	4 cut(s)	80, 306, 464, 695
Tru9I	TTAA	4 cut(s)	80, 306, 464, 695
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	5 cut(s)	519, 545, 558, 749, 767
XapI	RAATTY	3 cut(s)	602, 623, 706
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	180, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.