Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010506

Physical Location & Seq

Genomic Coordinates Reverse (-)

20382808 .. 20386497

Gene Structure 3690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGTAGGCTCTCATTCAGGCCTCGGCCCCTCGACATCCACAAGAGGCTCCCCGTCGTCAAGTCTTTCAAGGACTTCGAAGACGATGAAGCCGCCCCCACCTCCACCCGCAATTCTCAGCTCCTCCGTCTCTCCGCCGTCGACTCCTCCTCCGCCTCCGCCACCGAAATCGAGCCCAATTCCTATCTCCGCGCCAGAGGAGCCCGGGCCGAGCTCGGAGAGTTTGTGGAGTATGATTTAGATAATGAGGATGAGGATTGGCTTGAAGAGTTCAATGGTGAGGAGGAAATTCTTCCTGCCGAAAAGCTTGAGAGTCTTATTTTCAAGCTGGAGGTTTTGGATCATAAGGCTCGGGAGAGAGCAGGAGTTATAACCCCTACTCTTGCTTCACCAATCCCTGTACTTCTACAACTTGATGTCGCTACTGAGGCTCTACAAGGTCAGTCTCTCAGATATGCTGTTTTCCGGTCTGTTTATGAGTATTGGAGAGATAAGCGTGAAAGATGGCAGAAGCCTATCTTGCGACGTTTGCAGCCTCCTCCACCGGTTAATGATACCAACCCATACAATGTCTTTAGGCCAAGGGAGAAAACCCACAGACTGCACACGAGAAGGATGCAAAGAAGGGAAAACAATGTGCAATCATTTGAAAAGCTTCGCCAGGCGCAACCTGGACCAAGCCAAGACCATTGTGGAGGCTTTAATCAAGAGAGAAGAAAAAAGAGAGCAGTCATGGAGGTTGAAGTGGAGCTTCAAGTAAATCAAATGAAGTACAAGCATGAGACACTGCTTCTGGAAGATAGTTTAGTCCTTCCTGGTTTTCCATCCATGTCTTCCAAGTTTGTTTCAAGTGAGGAGGAAAATGTTGATTCAGATGACTTTGAAAACAGTCGGCCTCGTACACGACCTTCTGCACTGCCTAATCCGCCTTTACCAGACCCCAACTTGATCACGGGAACCATGAAGCAAGATTTCAGGCGTCGGCATGCACCTCAAGGGTGGCTTCATAAAATGGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

340

Amino Acids

39.52

Weight (kDa)

6.49

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16690 AT1G79020
fragaria_vesca	FvH4_6g36310
malus_domestica	MD09G1170200.v1.1 MD17G1156900.v1.1
prunus_persica	Prupe.3G028400_v2.0.a1 Prupe.3G028400_v2.0.a1
pyrus_communis	pycom09g08760 pycom17g15030
rosa_chinensis	RchiOBHm_Chr2g0148321
rosa_laevigata	RLG00000020336
rosa_multiflora	Rmu_co8435899.1_g000001 Rmu_sc0004032.1_g000012 Rmu_sc0011136.1_g000019
rosa_roxburghii	Rroxscaffold_2G00098900
rosa_rugosa	Rorug02G0405600
rosa_samantha	Rh2AG464300 Rh2BG477300 Rh2CG451000 Rh2DG486100
rosa_wichuraiana	Rw2G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	192
AciI	CCGC	7 cut(s)	93, 109, 135, 153, 159, 190, 926
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	979
AfaI	GTAC	4 cut(s)	402, 773, 901, 1017
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	9 cut(s)	70, 266, 274, 325, 650, 743, 755, 849, 884
AjnI	CCWGG	3 cut(s)	660, 670, 814
AluBI	AGCT	6 cut(s)	121, 214, 307, 328, 655, 751
AluI	AGCT	6 cut(s)	121, 214, 307, 328, 655, 751
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	3 cut(s)	134, 450, 776
AlwI	GGATC	1 cut(s)	348
Ama87I	CYCGRG	2 cut(s)	204, 351
AoxI	GGCC	5 cut(s)	20, 26, 207, 578, 893
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	288
AsiGI	ACCGGT	1 cut(s)	544
Asp700I	GAANNNNTTC	2 cut(s)	291, 654
AspLEI	GCGC	2 cut(s)	194, 667
AspS9I	GGNCC	3 cut(s)	27, 207, 674
AsuC2I	CCSGG	2 cut(s)	205, 206
AsuHPI	GGTGA	2 cut(s)	290, 381
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	2 cut(s)	204, 351
AvaII	GGWCC	1 cut(s)	674
BanII	GRGCYC	3 cut(s)	177, 205, 216
BarI	GAAGNNNNNNTAC	2 cut(s)	892, 924
BauI	CACGAG	1 cut(s)	607
BbsI	GAAGAC	2 cut(s)	87, 825
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	2 cut(s)	498, 832
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BciT130I	CCWGG	3 cut(s)	662, 672, 816
BclI	TGATCA	1 cut(s)	948
BcnI	CCSGG	2 cut(s)	205, 206
BcoDI	GTCTC	3 cut(s)	134, 450, 776
BisI	GCNGC	2 cut(s)	93, 533
BlsI	GCNGC	2 cut(s)	94, 534
Bme1390I	CCNGG	5 cut(s)	205, 206, 662, 672, 816
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	2 cut(s)	204, 351
BmgT120I	GGNCC	3 cut(s)	27, 207, 674
BmiI	GGNNCC	4 cut(s)	29, 50, 202, 958
BmrFI	CCNGG	5 cut(s)	205, 206, 662, 672, 816
BmsI	GCATC	1 cut(s)	606
BpiI	GAAGAC	2 cut(s)	87, 825
BpmI	CTGGAG	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	329, 978
BpuMI	CCSGG	2 cut(s)	205, 206
BsaHI	GRCGYC	1 cut(s)	979
BsaJI	CCNNGG	3 cut(s)	23, 204, 581
BsaWI	WCCGGW	2 cut(s)	465, 544
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 210, 240
Bse118I	RCCGGY	1 cut(s)	544
BseBI	CCWGG	3 cut(s)	662, 672, 816
BseDI	CCNNGG	3 cut(s)	23, 204, 581
BseGI	GGATG	4 cut(s)	36, 256, 621, 824
BseMII	CTCAG	3 cut(s)	131, 417, 463
BseRI	GAGGAG	7 cut(s)	113, 136, 139, 213, 296, 528, 869
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	2 cut(s)	587, 897
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	5 cut(s)	22, 28, 209, 580, 895
BshTI	ACCGGT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	2 cut(s)	204, 351
BsiSI	CCGG	3 cut(s)	205, 466, 545
BsmAI	GTCTC	3 cut(s)	134, 450, 776
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	5 cut(s)	22, 28, 209, 580, 895
BsoBI	CYCGRG	2 cut(s)	204, 351
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	177, 205, 216
Bsp143I	GATC	2 cut(s)	340, 948
BspACI	CCGC	7 cut(s)	93, 109, 135, 153, 159, 190, 926
BspANI	GGCC	5 cut(s)	22, 28, 209, 580, 895
BspCNI	CTCAG	3 cut(s)	130, 418, 462
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	29, 50, 202, 958
BspPI	GGATC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	3 cut(s)	23, 204, 581
BssMI	GATC	2 cut(s)	340, 948
BssNI	GRCGYC	1 cut(s)	979
BssSI	CACGAG	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	607
Bst2UI	CCWGG	3 cut(s)	662, 672, 816
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	979
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	3 cut(s)	117, 426, 449
BstF5I	GGATG	4 cut(s)	36, 256, 621, 824
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	194, 667
BstKTI	GATC	2 cut(s)	343, 951
BstMAI	GTCTC	3 cut(s)	134, 450, 776
BstMBI	GATC	2 cut(s)	340, 948
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 428, 520, 529, 925
BstNI	CCWGG	3 cut(s)	662, 672, 816
BstNSI	RCATGY	1 cut(s)	989
BstSCI	CCNGG	5 cut(s)	203, 204, 660, 670, 814
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	87, 825
BsuRI	GGCC	5 cut(s)	22, 28, 209, 580, 895
BtsCI	GGATG	4 cut(s)	36, 256, 621, 824
BtsI	GCAGTG	2 cut(s)	785, 914
BtsIMutI	CAGTG	2 cut(s)	785, 914
Cac8I	GCNNGC	1 cut(s)	987
CfoI	GCGC	2 cut(s)	194, 667
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	27, 207, 674
Cfr9I	CCCGGG	1 cut(s)	204
CseI	GACGC	1 cut(s)	968
Csp6I	GTAC	4 cut(s)	401, 772, 900, 1016
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	5 cut(s)	733, 779, 829, 961, 986
CviQI	GTAC	4 cut(s)	401, 772, 900, 1016
DdeI	CTNAG	3 cut(s)	117, 426, 449
DpnI	GATC	2 cut(s)	342, 950
DpnII	GATC	2 cut(s)	340, 948
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	4 cut(s)	124, 142, 148, 915
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	581
Eco147I	AGGCCT	1 cut(s)	22
Eco24I	GRGCYC	3 cut(s)	177, 205, 216
Eco47I	GGWCC	1 cut(s)	674
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	2 cut(s)	204, 351
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	660, 670, 814
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	3 cut(s)	177, 205, 216
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	5 cut(s)	736, 782, 832, 964, 989
FalI	AAGNNNNNCTT	6 cut(s)	503, 535, 735, 767, 987, 1019
FatI	CATG	5 cut(s)	732, 778, 828, 960, 985
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	948
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	93, 533
FokI	GGATG	4 cut(s)	23, 263, 628, 811
FriOI	GRGCYC	3 cut(s)	177, 205, 216
Fsp4HI	GCNGC	2 cut(s)	93, 533
GlaI	GCGC	2 cut(s)	193, 666
GluI	GCNGC	2 cut(s)	93, 533
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	22, 28, 209, 580, 895
HapII	CCGG	3 cut(s)	205, 466, 545
HgaI	GACGC	1 cut(s)	968
HhaI	GCGC	2 cut(s)	194, 667
Hin1I	GRCGYC	1 cut(s)	979
Hin1II	CATG	5 cut(s)	736, 782, 832, 964, 989
Hin6I	GCGC	2 cut(s)	192, 665
HinP1I	GCGC	2 cut(s)	192, 665
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	305, 653
HinfI	GANTC	3 cut(s)	143, 313, 869
HpaII	CCGG	3 cut(s)	205, 466, 545
HphI	GGTGA	2 cut(s)	290, 381
Hpy166II	GTNNAC	2 cut(s)	142, 902
Hpy188I	TCNGA	3 cut(s)	218, 452, 874
Hpy188III	TCNNGA	3 cut(s)	353, 707, 794
Hpy8I	GTNNAC	2 cut(s)	142, 902
Hpy99I	CGWCG	4 cut(s)	59, 143, 528, 984
HpyAV	CCTTC	4 cut(s)	606, 618, 821, 918
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	6 cut(s)	532, 604, 619, 640, 914, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 428, 520, 529, 925
HpyF3I	CTNAG	3 cut(s)	117, 426, 449
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	979
Hsp92II	CATG	5 cut(s)	736, 782, 832, 964, 989
HspAI	GCGC	2 cut(s)	192, 665
Ksp22I	TGATCA	1 cut(s)	948
Kzo9I	GATC	2 cut(s)	340, 948
LmnI	GCTCC	4 cut(s)	54, 126, 200, 748
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	606
MaeII	ACGT	1 cut(s)	526
MalI	GATC	2 cut(s)	342, 950
MboI	GATC	2 cut(s)	340, 948
MboII	GAAGA	6 cut(s)	92, 278, 284, 726, 809, 825
MhlI	GDGCHC	3 cut(s)	177, 205, 216
MluCI	AATT	3 cut(s)	112, 178, 288
MlyI	GAGTC	2 cut(s)	137, 322
MroXI	GAANNNNTTC	2 cut(s)	291, 654
MseI	TTAA	2 cut(s)	549, 702
MspI	CCGG	3 cut(s)	205, 466, 545
MspR9I	CCNGG	5 cut(s)	205, 206, 662, 672, 816
MvaI	CCWGG	3 cut(s)	662, 672, 816
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	200, 428, 520, 529, 925
NciI	CCSGG	2 cut(s)	205, 206
NdeII	GATC	2 cut(s)	340, 948
NlaIII	CATG	5 cut(s)	736, 782, 832, 964, 989
NlaIV	GGNNCC	4 cut(s)	29, 50, 202, 958
NmeAIII	GCCGAG	2 cut(s)	4, 235
NspI	RCATGY	1 cut(s)	989
NspV	TTCGAA	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	22
PdmI	GAANNNNTTC	2 cut(s)	291, 654
PfeI	GAWTC	1 cut(s)	869
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	2 cut(s)	94, 534
PleI	GAGTC	2 cut(s)	137, 321
PpsI	GAGTC	2 cut(s)	137, 321
PsiI	TTATAA	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	660, 670, 814
PspGI	CCWGG	3 cut(s)	660, 670, 814
PspN4I	GGNNCC	4 cut(s)	29, 50, 202, 958
PspPI	GGNCC	3 cut(s)	27, 207, 674
RsaI	GTAC	4 cut(s)	402, 773, 901, 1017
RsaNI	GTAC	4 cut(s)	401, 772, 900, 1016
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	549, 702
SatI	GCNGC	2 cut(s)	93, 533
Sau3AI	GATC	2 cut(s)	340, 948
Sau96I	GGNCC	3 cut(s)	27, 207, 674
SchI	GAGTC	2 cut(s)	137, 322
ScrFI	CCNGG	5 cut(s)	205, 206, 662, 672, 816
SduI	GDGCHC	3 cut(s)	177, 205, 216
SfaNI	GCATC	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	674
SmaI	CCCGGG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	308, 993
SmoI	CTYRAG	2 cut(s)	308, 993
SphI	GCATGC	1 cut(s)	989
SrfI	GCCCGGGC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	112, 178, 288
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	7 cut(s)	93, 109, 135, 153, 159, 190, 926
SstI	GAGCTC	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	5 cut(s)	203, 204, 660, 670, 814
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	890
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	4 cut(s)	33, 78, 141, 171
TasI	AATT	3 cut(s)	112, 178, 288
TatI	WGTACW	2 cut(s)	400, 771
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	2 cut(s)	549, 702
Tru9I	TTAA	2 cut(s)	549, 702
TscAI	CASTG	2 cut(s)	792, 921
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	4 cut(s)	102, 782, 977, 995
TspGWI	ACGGA	1 cut(s)	116
TspMI	CCCGGG	1 cut(s)	204
TspRI	CASTG	2 cut(s)	792, 921
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	1 cut(s)	288
XceI	RCATGY	1 cut(s)	989
XcmI	CCANNNNNNNNNTGG	2 cut(s)	668, 689
XmaI	CCCGGG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	2 cut(s)	291, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.