Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435899.1

Orthogroup ID

OG0010506

Physical Location & Seq

Genomic Coordinates Reverse (-)

253 .. 1419

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435899.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgtctgataatcataatcacaatgtttcttatattgattattctcaggttaggcgcaacctggaccaagccaagaccattgtggaggctttaatcaagagagaagaaaaaaagagagcagtcatggaggccgaagtggagcttcaagtaaatcaaatgaagtacaagcatgagacactgctcctggaagatagtttagtccttcctggttttccacccatgtcttccaagtttgtttcaagtgaggaggaaaatgttgattcagatgactttgaaaacagtcggcctcgtacacgaccttctgcactgcctaatccgcctttaccagaccccaacttgatcacgggaaccatgaagcaagatttcaggcgtcggcatgcacctcaagggtggcttcataaaatggatcccctcgagccagttttgttatttacaaaacccttagttccagagaagttggcagctgcaggcattgtaccaccatcagattcttcaacgaaaaatggagtaaccacagcaccttttaagttccgcggaagaattggccgagggggccgattaatatttgatagatggaacccattgatgcacactccaatcgactttgggaattcatattatatacctcctaaacctcgaccaacaacatataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

218

Amino Acids

24.87

Weight (kDa)

9.04

Isoelectric Point (pI)

64.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16690 AT1G79020
fragaria_vesca	FvH4_6g36310
malus_domestica	MD09G1170200.v1.1 MD17G1156900.v1.1
prunus_persica	Prupe.3G028400_v2.0.a1 Prupe.3G028400_v2.0.a1
pyrus_communis	pycom09g08760 pycom17g15030
rosa_chinensis	RchiOBHm_Chr2g0148321
rosa_laevigata	RLG00000020336
rosa_multiflora	Rmu_co8435899.1_g000001 Rmu_sc0004032.1_g000012 Rmu_sc0011136.1_g000019
rosa_roxburghii	Rroxscaffold_2G00098900
rosa_rugosa	Rorug02G0405600
rosa_samantha	Rh2AG464300 Rh2BG477300 Rh2CG451000 Rh2DG486100
rosa_wichuraiana	Rw2G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	534
AciI	CCGC	3 cut(s)	317, 532, 534
AclWI	GGATC	2 cut(s)	401, 414
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	3 cut(s)	164, 292, 477
AgsI	TTSAA	4 cut(s)	146, 240, 275, 495
AjnI	CCWGG	3 cut(s)	60, 183, 205
AluBI	AGCT	2 cut(s)	142, 464
AluI	AGCT	2 cut(s)	142, 464
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	401, 414
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	129, 284, 544, 553
ApeKI	GCWGC	2 cut(s)	461, 464
ApoI	RAATTY	1 cut(s)	610
AseI	ATTAAT	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	64, 553
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	451, 473
BccI	CCATC	2 cut(s)	490, 567
BciT130I	CCWGG	3 cut(s)	62, 185, 207
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
Bme1390I	CCNGG	3 cut(s)	62, 185, 207
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	64, 553
BmiI	GGNNCC	4 cut(s)	349, 408, 554, 578
BmrFI	CCNGG	3 cut(s)	62, 185, 207
BmsI	GCATC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	532, 547
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	3 cut(s)	62, 185, 207
BseDI	CCNNGG	2 cut(s)	532, 547
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	451, 473
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	4 cut(s)	131, 286, 546, 555
BsiHKCI	CYCGRG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	4 cut(s)	131, 286, 546, 555
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	339, 406
BspACI	CCGC	3 cut(s)	317, 532, 534
BspANI	GGCC	4 cut(s)	131, 286, 546, 555
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	4 cut(s)	349, 408, 554, 578
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	2 cut(s)	401, 414
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	532, 547
BssMI	GATC	2 cut(s)	339, 406
BssNI	GRCGYC	1 cut(s)	370
Bst2UI	CCWGG	3 cut(s)	62, 185, 207
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	378, 469
BstDEI	CTNAG	2 cut(s)	45, 442
BstDSI	CCRYGG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	2 cut(s)	342, 409
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	339, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 552
BstNI	CCWGG	3 cut(s)	62, 185, 207
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	60, 183, 205
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	451, 473
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	131, 286, 546, 555
BtgI	CCRYGG	1 cut(s)	532
BtsI	GCAGTG	2 cut(s)	176, 305
BtsIMutI	CAGTG	2 cut(s)	176, 305
Cac8I	GCNNGC	2 cut(s)	378, 469
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	64, 553
Cfr42I	CCGCGG	1 cut(s)	535
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	163, 291, 476
CviAII	CATG	5 cut(s)	124, 170, 220, 352, 377
CviQI	GTAC	3 cut(s)	163, 291, 476
DdeI	CTNAG	2 cut(s)	45, 442
DpnI	GATC	2 cut(s)	341, 408
DpnII	GATC	2 cut(s)	339, 406
EaeI	YGGCCR	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	3 cut(s)	60, 183, 205
FaeI	CATG	5 cut(s)	127, 173, 223, 355, 380
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 378, 410
FatI	CATG	5 cut(s)	123, 169, 219, 351, 376
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	462, 465
Fsp4HI	GCNGC	2 cut(s)	462, 465
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	462, 465
HaeIII	GGCC	4 cut(s)	131, 286, 546, 555
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	127, 173, 223, 355, 380
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	260, 488
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	7, 265, 487
Hpy188III	TCNNGA	2 cut(s)	97, 449
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	212, 309
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	305, 380, 467, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 552
HpyF3I	CTNAG	2 cut(s)	45, 442
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	127, 173, 223, 355, 380
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	339
KspI	CCGCGG	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	339, 406
LmnI	GCTCC	2 cut(s)	139, 186
Lsp1109I	GCAGC	2 cut(s)	451, 473
LweI	GCATC	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	341, 408
MboI	GATC	2 cut(s)	339, 406
MboII	GAAGA	5 cut(s)	116, 200, 216, 483, 549
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	3 cut(s)	540, 610, 652
MseI	TTAA	3 cut(s)	92, 525, 560
MspA1I	CMGCKG	2 cut(s)	464, 534
MspR9I	CCNGG	3 cut(s)	62, 185, 207
MvaI	CCWGG	3 cut(s)	62, 185, 207
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	316, 552
NdeII	GATC	2 cut(s)	339, 406
NlaIII	CATG	5 cut(s)	127, 173, 223, 355, 380
NlaIV	GGNNCC	4 cut(s)	349, 408, 554, 578
NmeAIII	GCCGAG	1 cut(s)	572
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	260, 488
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	463, 466
PshBI	ATTAAT	1 cut(s)	560
Psp6I	CCWGG	3 cut(s)	60, 183, 205
PspGI	CCWGG	3 cut(s)	60, 183, 205
PspN4I	GGNNCC	4 cut(s)	349, 408, 554, 578
PspPI	GGNCC	2 cut(s)	64, 553
PspXI	VCTCGAGB	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	3 cut(s)	164, 292, 477
RsaNI	GTAC	3 cut(s)	163, 291, 476
SacII	CCGCGG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	92, 525, 560
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	2 cut(s)	339, 406
Sau96I	GGNCC	2 cut(s)	64, 553
ScrFI	CCNGG	3 cut(s)	62, 185, 207
SetI	ASST	9 cut(s)	51, 63, 144, 301, 385, 466, 523, 628, 637
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	465
SfiI	GGCCNNNNNGGCC	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	413
Sfr303I	CCGCGG	1 cut(s)	535
SgrBI	CCGCGG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	384, 413
SmoI	CTYRAG	2 cut(s)	384, 413
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	540, 610, 652
SsiI	CCGC	3 cut(s)	317, 532, 534
SspI	AATATT	1 cut(s)	564
StyD4I	CCNGG	3 cut(s)	60, 183, 205
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	414, 600, 637
TasI	AATT	3 cut(s)	540, 610, 652
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	260, 488
Tru1I	TTAA	3 cut(s)	92, 525, 560
Tru9I	TTAA	3 cut(s)	92, 525, 560
TscAI	CASTG	2 cut(s)	183, 312
TseI	GCWGC	2 cut(s)	461, 464
TspDTI	ATGAA	4 cut(s)	173, 368, 386, 603
TspRI	CASTG	2 cut(s)	183, 312
VpaK11BI	GGWCC	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.