AT1G79020

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010506
Physical Location & Seq
Reverse (-)
29727044 .. 29730593
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79020.1

Sequence Viewer

Length: 1362 bp
ATGAGTAGGCTCTCTTTCCGGCCACGGCCATTAGACATTCATAAGAAGCTTCCCATTTTAAAATCCTTTAAAGACTTTGAAGATGATGAGACTCCAACTTCTACCACTAGAAATTCTCAGTTGCTGCGTATTGCTTCCGTAGAAGTTGACAATGAGGTGGCTCCAGTGCCAAGTAAGAAACCGGCTTCAGAAATACCAACACCTCAATTTGTTATTGTGGATACATATGAAAGGGATTATTCTCCGACTTTTGGTCAGCCTGCTTCTTATCTACGTGCAAGAGGAGCTCGGTCTGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGAGGATGAAGACTGGCTTTATGAGTTTGATAAGGATAAGAAAGAACTTCCACCTGAAAAGCTTGAGATCATCATTTTTAAACTAGAGGTGTTGGATCACAAGACGCGGGAAAGAGCAGGAGTTATTACACCTACTCTCGGCTCTCCAGTTCCTGTGCTTTTGCAGTTTGATGCTGCTTCTGATGTGCTGCAAGTACTGTCCATTAATTATGGAACCTTCCAGGCGATCTTCAACTACTGGAAAGAAAAGCGTAAAAGATGGCAGAAGCCTATCTTACGGCGTTTACAGCCTCCCCCACCGGTTAATGACACCAATCCCTATAATGTGTTTAGGCCAAGGGAGAAAGTTCACAGACTCCACACAAGAAGGATGCAGAGGAGAGAAAACAATGTGCAGTCATTTGAAAAGCTTCGACAGGTTAGACGCAATCTAGGCCAAGCACAGAGCATTCTGGAGGCTCTCATTAAGAGAGAAGAGAAGAAGAGGGATGTCATGGACAGTGAGGTTAGCCTTCAGAGAATCCAACTCCAATACAGGCATGAAACAGAGCTCTTGGAAGATAGCTTGGCTATGCCTGGATTTCAACCCACTACAACATCATACAAATTTGGCTCAAGCGATGATGAACTGATGGACTCTGATGATCACACCAGTACTCGTGTACGTACAAGACCTGCGGTTATTCCTAGTTCTCGTTTCACCAACTTAAATCTGAATGCATCTCATCCCGGAGGCATCAAACAAGAAGTTAGAAGACGACAGTCACAGCATGGATGGCTTCACAGACTGGATCCTAATGAACCGGTAATGCTATTCACAAAACCGCTGGTTCCCGATAAACTGGCAGCTGCAGGGATTGTTCCTCCAACACCGGATTCATCACCAGGTCAACCTCCAAGTCGGTTTCAGGGGAGGATTGGGCGTGGTGGCCGAATTATTTTCGATAGATGGAATCCGTTGATGCAATCTCACATTAATTGTGGAAACTCTTATTACATTGCTCCAAATCACCGGTCTACCAACTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

453

Amino Acids

52.4

Weight (kDa)

9.22

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPL1 PF10513 39 - 139 1.1e-08 Enhancer of polycomb-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1012
AccI GTMKAC 1 cut(s) 1346
AccII CGCG 1 cut(s) 436
AciI CCGC 3 cut(s) 436, 1007, 1154
AclWI GGATC 3 cut(s) 432, 1115, 1128
AcoI YGGCCR 3 cut(s) 20, 26, 1258
AcsI RAATTY 3 cut(s) 112, 305, 935
AcuI CTGAAG 2 cut(s) 171, 827
AfaI GTAC 4 cut(s) 525, 985, 993, 997
AfiI CCNNNNNNNGG 2 cut(s) 251, 467
AgeI ACCGGT 3 cut(s) 628, 1132, 1341
AgsI TTSAA 4 cut(s) 80, 562, 734, 914
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 3 cut(s) 549, 904, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 1189, 1221
AluBI AGCT 8 cut(s) 49, 287, 298, 391, 739, 880, 894, 1178
AluI AGCT 8 cut(s) 49, 287, 298, 391, 739, 880, 894, 1178
Alw21I GWGCWC 2 cut(s) 289, 882
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 3 cut(s) 432, 1115, 1128
AlwNI CAGNNNCTG 2 cut(s) 124, 482
AoxI GGCC 5 cut(s) 20, 26, 662, 763, 1258
ApeKI GCWGC 5 cut(s) 124, 503, 517, 1175, 1178
ApoI RAATTY 3 cut(s) 112, 305, 935
ArsI GACNNNNNNTTYG 2 cut(s) 1328, 1360
AseI ATTAAT 2 cut(s) 534, 1305
AsiGI ACCGGT 3 cut(s) 628, 1132, 1341
Asp700I GAANNNNTTC 1 cut(s) 738
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 3 cut(s) 1021, 1203, 1331
BamHI GGATCC 1 cut(s) 1120
BanII GRGCYC 2 cut(s) 289, 882
BauI CACGAG 1 cut(s) 987
BbsI GAAGAC 2 cut(s) 345, 1090
Bbv12I GWGCWC 2 cut(s) 289, 882
BbvI GCAGC 5 cut(s) 111, 490, 504, 1165, 1187
BccI CCATC 4 cut(s) 582, 955, 1098, 1272
BceAI ACGGC 2 cut(s) 41, 623
BciT130I CCWGG 3 cut(s) 551, 906, 1215
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 1 cut(s) 1059
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 4 cut(s) 108, 413, 761, 1017
BfmI CTRYAG 1 cut(s) 1179
BfuAI ACCTGC 1 cut(s) 1012
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 5 cut(s) 125, 504, 518, 1176, 1179
BlsI GCNGC 5 cut(s) 126, 505, 519, 1177, 1180
BmcAI AGTACT 2 cut(s) 525, 985
Bme1390I CCNGG 4 cut(s) 551, 906, 1059, 1215
BmeRI GACNNNNNGTC 1 cut(s) 252
BmiI GGNNCC 4 cut(s) 162, 544, 1122, 1161
BmrFI CCNGG 4 cut(s) 551, 906, 1059, 1215
BmsI GCATC 5 cut(s) 490, 690, 1058, 1074, 1281
BoxI GACNNNNGTC 1 cut(s) 1090
BpiI GAAGAC 2 cut(s) 345, 1090
BpmI CTGGAG 3 cut(s) 147, 459, 803
BpuEI CTTGAG 2 cut(s) 413, 928
BpuMI CCSGG 1 cut(s) 1059
BsaAI YACGTR 2 cut(s) 275, 995
BsaJI CCNNGG 2 cut(s) 23, 665
BsaWI WCCGGW 4 cut(s) 628, 1132, 1201, 1341
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 467
Bse118I RCCGGY 4 cut(s) 181, 628, 1132, 1341
Bse1I ACTGG 7 cut(s) 164, 347, 476, 572, 981, 1122, 1176
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 3 cut(s) 551, 906, 1215
BseDI CCNNGG 2 cut(s) 23, 665
BseGI GGATG 5 cut(s) 340, 705, 823, 1054, 1109
BseLI CCNNNNNNNGG 2 cut(s) 251, 467
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 2 cut(s) 131, 285
BseNI ACTGG 7 cut(s) 164, 347, 476, 572, 981, 1122, 1176
BseRI GAGGAG 2 cut(s) 297, 721
BseXI GCAGC 5 cut(s) 111, 490, 504, 1165, 1187
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 5 cut(s) 22, 28, 664, 765, 1260
BshTI ACCGGT 3 cut(s) 628, 1132, 1341
BsiHKAI GWGCWC 2 cut(s) 289, 882
BsiSI CCGG 7 cut(s) 19, 182, 629, 1059, 1133, 1202, 1342
BslI CCNNNNNNNGG 2 cut(s) 251, 467
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 2 cut(s) 777, 1051
BsnI GGCC 5 cut(s) 22, 28, 664, 765, 1260
Bsp1286I GDGCHC 2 cut(s) 289, 882
Bsp143I GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
BspACI CCGC 3 cut(s) 436, 1007, 1154
BspANI GGCC 5 cut(s) 22, 28, 664, 765, 1260
BspCNI CTCAG 2 cut(s) 130, 286
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 4 cut(s) 162, 544, 1122, 1161
BspMAI CTGCAG 1 cut(s) 1183
BspMI ACCTGC 1 cut(s) 1012
BspPI GGATC 3 cut(s) 432, 1115, 1128
BsrDI GCAATG 1 cut(s) 1326
BsrFI RCCGGY 4 cut(s) 181, 628, 1132, 1341
BsrI ACTGG 7 cut(s) 164, 347, 476, 572, 981, 1122, 1176
BssAI RCCGGY 4 cut(s) 181, 628, 1132, 1341
BssECI CCNNGG 2 cut(s) 23, 665
BssMI GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
BssSI CACGAG 1 cut(s) 987
BssT1I CCWWGG 1 cut(s) 665
Bst2BI CACGAG 1 cut(s) 987
Bst2UI CCWGG 3 cut(s) 551, 906, 1215
Bst4CI ACNGT 3 cut(s) 528, 830, 1092
Bst6I CTCTTC 2 cut(s) 798, 806
BstBAI YACGTR 2 cut(s) 275, 995
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 117, 294
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 5 cut(s) 340, 705, 823, 1054, 1109
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 6 cut(s) 322, 399, 427, 558, 976, 1123
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 284, 616, 762, 1105
BstNI CCWGG 3 cut(s) 551, 906, 1215
BstPAI GACNNNNGTC 1 cut(s) 1090
BstSCI CCNGG 4 cut(s) 549, 904, 1057, 1213
BstSFI CTRYAG 1 cut(s) 1179
BstSNI TACGTA 1 cut(s) 995
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 5 cut(s) 111, 490, 504, 1165, 1187
BstV2I GAAGAC 2 cut(s) 345, 1090
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 5 cut(s) 22, 28, 664, 765, 1260
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 5 cut(s) 340, 705, 823, 1054, 1109
BtsIMutI CAGTG 2 cut(s) 171, 835
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 2 cut(s) 124, 482
Cfr10I RCCGGY 4 cut(s) 181, 628, 1132, 1341
CseI GACGC 2 cut(s) 442, 762
CsiI ACCWGGT 1 cut(s) 1213
Csp6I GTAC 4 cut(s) 524, 984, 992, 996
CspAI ACCGGT 3 cut(s) 628, 1132, 1341
CviAII CATG 3 cut(s) 823, 869, 1100
CviQI GTAC 4 cut(s) 524, 984, 992, 996
DdeI CTNAG 2 cut(s) 117, 294
DpnI GATC 6 cut(s) 321, 398, 426, 557, 975, 1122
DpnII GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
DraI TTTAAA 3 cut(s) 60, 70, 409
DriI GACNNNNNGTC 1 cut(s) 252
EaeI YGGCCR 3 cut(s) 20, 26, 1258
Eam1104I CTCTTC 2 cut(s) 798, 806
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 2 cut(s) 798, 806
Ecl136II GAGCTC 2 cut(s) 287, 880
Eco105I TACGTA 1 cut(s) 995
Eco130I CCWWGG 1 cut(s) 665
Eco24I GRGCYC 2 cut(s) 289, 882
Eco53kI GAGCTC 2 cut(s) 287, 880
Eco57I CTGAAG 2 cut(s) 171, 827
EcoICRI GAGCTC 2 cut(s) 287, 880
EcoRII CCWGG 3 cut(s) 549, 904, 1213
EcoT14I CCWWGG 1 cut(s) 665
EcoT22I ATGCAT 1 cut(s) 1051
EcoT38I GRGCYC 2 cut(s) 289, 882
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 3 cut(s) 826, 872, 1103
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 587, 619
FatI CATG 3 cut(s) 822, 868, 1099
FauI CCCGC 1 cut(s) 429
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 1 cut(s) 1346
Fnu4HI GCNGC 5 cut(s) 125, 504, 518, 1176, 1179
FokI GGATG 5 cut(s) 347, 712, 830, 1041, 1116
FriOI GRGCYC 2 cut(s) 289, 882
Fsp4HI GCNGC 5 cut(s) 125, 504, 518, 1176, 1179
FspBI CTAG 4 cut(s) 108, 413, 761, 1017
GluI GCNGC 5 cut(s) 125, 504, 518, 1176, 1179
GsuI CTGGAG 3 cut(s) 147, 459, 803
HaeIII GGCC 5 cut(s) 22, 28, 664, 765, 1260
HapII CCGG 7 cut(s) 19, 182, 629, 1059, 1133, 1202, 1342
HgaI GACGC 2 cut(s) 442, 762
Hin1II CATG 3 cut(s) 826, 872, 1103
HincII GTYRAC 2 cut(s) 148, 1220
HindII GTYRAC 2 cut(s) 148, 1220
HindIII AAGCTT 3 cut(s) 47, 389, 737
HinfI GANTC 6 cut(s) 91, 684, 849, 965, 1205, 1282
HpaII CCGG 7 cut(s) 19, 182, 629, 1059, 1133, 1202, 1342
HphI GGTGA 3 cut(s) 1021, 1203, 1331
Hpy166II GTNNAC 6 cut(s) 148, 614, 679, 992, 1220, 1347
Hpy188I TCNGA 7 cut(s) 190, 246, 295, 511, 846, 970, 1044
Hpy188III TCNNGA 3 cut(s) 323, 782, 1163
Hpy8I GTNNAC 6 cut(s) 148, 614, 679, 992, 1220, 1347
HpyAV CCTTC 3 cut(s) 556, 690, 851
HpyCH4III ACNGT 3 cut(s) 528, 830, 1092
HpyCH4IV ACGT 2 cut(s) 274, 994
HpyCH4V TGCA 8 cut(s) 278, 493, 520, 703, 724, 1049, 1181, 1294
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 616, 762, 1105
HpyF3I CTNAG 2 cut(s) 117, 294
HpySE526I ACGT 2 cut(s) 274, 994
Hsp92II CATG 3 cut(s) 826, 872, 1103
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
LmnI GCTCC 3 cut(s) 166, 284, 1336
Lsp1109I GCAGC 5 cut(s) 111, 490, 504, 1165, 1187
LweI GCATC 5 cut(s) 490, 690, 1058, 1074, 1281
MabI ACCWGGT 1 cut(s) 1213
MaeI CTAG 4 cut(s) 108, 413, 761, 1017
MaeII ACGT 2 cut(s) 274, 994
MaeIII GTNAC 1 cut(s) 1092
MalI GATC 6 cut(s) 321, 398, 426, 557, 975, 1122
MboI GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
MboII GAAGA 8 cut(s) 92, 350, 550, 815, 820, 823, 899, 1095
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 2 cut(s) 289, 882
MluCI AATT 7 cut(s) 112, 206, 305, 535, 935, 1263, 1306
MlyI GAGTC 3 cut(s) 85, 678, 959
MmeI TCCRAC 5 cut(s) 119, 269, 402, 877, 1220
Mph1103I ATGCAT 1 cut(s) 1051
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 8 cut(s) 59, 69, 408, 534, 633, 795, 1037, 1305
MspA1I CMGCKG 2 cut(s) 1156, 1178
MspI CCGG 7 cut(s) 19, 182, 629, 1059, 1133, 1202, 1342
MspR9I CCNGG 4 cut(s) 551, 906, 1059, 1215
Mva1269I GAATGC 2 cut(s) 777, 1051
MvaI CCWGG 3 cut(s) 551, 906, 1215
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 4 cut(s) 284, 616, 762, 1105
NciI CCSGG 1 cut(s) 1059
NdeI CATATG 1 cut(s) 226
NdeII GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
NlaIII CATG 3 cut(s) 826, 872, 1103
NlaIV GGNNCC 4 cut(s) 162, 544, 1122, 1161
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 1092
NsiI ATGCAT 1 cut(s) 1051
PctI GAATGC 2 cut(s) 777, 1051
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 849, 1205, 1282
PfoI TCCNGGA 1 cut(s) 1057
PinAI ACCGGT 3 cut(s) 628, 1132, 1341
PkrI GCNGC 5 cut(s) 126, 505, 519, 1177, 1180
PleI GAGTC 3 cut(s) 85, 678, 959
PpsI GAGTC 3 cut(s) 85, 678, 959
Ppu21I YACGTR 2 cut(s) 275, 995
PshAI GACNNNNGTC 1 cut(s) 1090
PshBI ATTAAT 2 cut(s) 534, 1305
Psp124BI GAGCTC 2 cut(s) 289, 882
Psp6I CCWGG 3 cut(s) 549, 904, 1213
PspGI CCWGG 3 cut(s) 549, 904, 1213
PspN4I GGNNCC 4 cut(s) 162, 544, 1122, 1161
PstI CTGCAG 1 cut(s) 1183
PstNI CAGNNNCTG 2 cut(s) 124, 482
PsuI RGATCY 1 cut(s) 1120
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 4 cut(s) 525, 985, 993, 997
RsaNI GTAC 4 cut(s) 524, 984, 992, 996
SacI GAGCTC 2 cut(s) 289, 882
SaqAI TTAA 8 cut(s) 59, 69, 408, 534, 633, 795, 1037, 1305
SatI GCNGC 5 cut(s) 125, 504, 518, 1176, 1179
Sau3AI GATC 6 cut(s) 319, 396, 424, 555, 973, 1120
ScaI AGTACT 2 cut(s) 525, 985
SchI GAGTC 3 cut(s) 85, 678, 959
ScrFI CCNGG 4 cut(s) 551, 906, 1059, 1215
SduI GDGCHC 2 cut(s) 289, 882
SexAI ACCWGGT 1 cut(s) 1213
SfaNI GCATC 5 cut(s) 490, 690, 1058, 1074, 1281
SfcI CTRYAG 1 cut(s) 1179
SmlI CTYRAG 2 cut(s) 392, 943
SmoI CTYRAG 2 cut(s) 392, 943
SnaBI TACGTA 1 cut(s) 995
Sse9I AATT 7 cut(s) 112, 206, 305, 535, 935, 1263, 1306
SsiI CCGC 3 cut(s) 436, 1007, 1154
SspMI CTAG 4 cut(s) 108, 413, 761, 1017
SstI GAGCTC 2 cut(s) 289, 882
StyD4I CCNGG 4 cut(s) 549, 904, 1057, 1213
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 3 cut(s) 528, 830, 1092
TaiI ACGT 2 cut(s) 277, 997
TaqI TCGA 3 cut(s) 742, 1272, 1356
TaqII GACCGA 1 cut(s) 279
TasI AATT 7 cut(s) 112, 206, 305, 535, 935, 1263, 1306
TatI WGTACW 2 cut(s) 523, 983
TfiI GAWTC 3 cut(s) 849, 1205, 1282
Tru1I TTAA 8 cut(s) 59, 69, 408, 534, 633, 795, 1037, 1305
Tru9I TTAA 8 cut(s) 59, 69, 408, 534, 633, 795, 1037, 1305
TscAI CASTG 2 cut(s) 171, 835
TseFI GTSAC 1 cut(s) 1092
TseI GCWGC 5 cut(s) 124, 503, 517, 1175, 1178
Tsp45I GTSAC 1 cut(s) 1092
TspDTI ATGAA 7 cut(s) 29, 243, 351, 885, 969, 1143, 1197
TspGWI ACGGA 2 cut(s) 127, 1275
TspRI CASTG 2 cut(s) 171, 835
VspI ATTAAT 2 cut(s) 534, 1305
XapI RAATTY 3 cut(s) 112, 305, 935
XmiI GTMKAC 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 4 cut(s) 108, 413, 761, 1017
ZrmI AGTACT 2 cut(s) 525, 985
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.