Rw2G037850

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010506
Physical Location & Seq
Forward (+)
62471473 .. 62475719
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037850.1

Sequence Viewer

Length: 1299 bp
ATGAGTAGGCTCTCATTCAGGCCTCGGCCCCTCGACATCCACAAGAGGCTCCCCGTCGTCAAGTCTTTCAAGGACTTCGAAGACGATGAAGCCGCCCCCACCTCCACCCGCAATTCTCAGCTCCTCCCCCCTGAAATCCCGACTCCTCAGTTTGTTGTTGTTGATACTTATGAGAGAGACTACTCTCGCACTTTTGCCCAACCCAATTCCTATCTCCGCGCCAGAGGAGCCCGGGCCGAGCTCGGAGAGTTTGTGGAGTATGATTTAGATAATGAGGATGAGGATTGGCTTGAAGAGTTCAATGGTGAGGAGGAAATTCTTCCTGCCGAAAAGCTTGAGAGTCTTATTTTCAAGCTGGAGGTTTTGGATCATAAGGCTCGGGAGAGAGCAGGAGTTATAACCCCTACTCTTGCTTCACCAATCCCTGTACTTCTACAACTTGATGTTGCTACTGAGGCTCTACAAGTTCAGTCTCTCAGATATGCTGTCATCCGGTCTGTTTATGAGTATTGGAGAGATAAGCGTGAAAGATGGCAGAAGCCTATCTTGCGACGTTTGCAGCCTCCTCCACCGGTTAATGATACCAACCCATACAATGTCTTCAGGCCAAGGGAGAAAACCCACAGACTGCACACGAGAAGGATGCAAAGAAGGGAAAACAATGTGCAATCATTTGAAAAGCTTCGCCAGGTTAGGCGCAACCTGGACCAAGCCAAGACCATTGTGGAGGCTTTAATCAAGAGAGAAGAAAAAAAGAGAGCAGTCATGGAGACCGAAGTGGAGCTTCAAGTAAATCAAATGAAGTACAAGCATGAGACACTGCTCCTGGAAGATAGTTTAGTCCTTCCTGGTTTTCCACCCATGTCTTCCAAGTTTGTTTCAAGTGAGGAGGAAAATGTTGATTCAGATGACTTTGAAAACAGTCGGCCTCGTACACGACCTTCTGCACTGCCTAATCCGCCTTTACCAGACCCCAACTTGATCACAGGAACCATGAAGCAAGATTTCAGGCGTCGGCATGCACCTCAAGGGTGGCTTCATAAAATGGATCCCCTTGAGCCAGTTTTGTTATTTACAAAACCCTTAGTTCCAGAGAAGTTGGCAGCTGCAGGCATTGTACCACCATCAGATTCTTCAACGAAAAATGGAGTAACCACAGCACCTTTTAAGTTCCGCGGAAGAATTGGCCGAGGGGGCCGATTAATATTTGATAGATGGAACCCATTGATGCACACTCCAATCGACTTTGGGAATTCATATTATATACCTCCTAAACCTCGACCAACAACATATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

432

Amino Acids

50.25

Weight (kDa)

8.96

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPL1 PF10513 43 - 120 2.3e-08 Enhancer of polycomb-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AccII CGCG 2 cut(s) 219, 1176
AciI CCGC 6 cut(s) 93, 109, 217, 959, 1174, 1176
AclWI GGATC 3 cut(s) 375, 1043, 1056
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 2 cut(s) 315, 1252
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 4 cut(s) 429, 806, 934, 1119
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 9 cut(s) 70, 293, 301, 352, 677, 788, 882, 917, 1137
AjnI CCWGG 4 cut(s) 687, 702, 825, 847
AluBI AGCT 7 cut(s) 121, 241, 334, 355, 682, 784, 1106
AluI AGCT 7 cut(s) 121, 241, 334, 355, 682, 784, 1106
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 4 cut(s) 171, 477, 764, 809
AlwI GGATC 3 cut(s) 375, 1043, 1056
Ama87I CYCGRG 2 cut(s) 231, 378
AoxI GGCC 7 cut(s) 20, 26, 234, 605, 926, 1186, 1195
ApeKI GCWGC 3 cut(s) 559, 1103, 1106
ApoI RAATTY 2 cut(s) 315, 1252
AseI ATTAAT 1 cut(s) 1202
AsiGI ACCGGT 1 cut(s) 571
Asp700I GAANNNNTTC 2 cut(s) 318, 681
AspLEI GCGC 2 cut(s) 221, 699
AspS9I GGNCC 4 cut(s) 27, 234, 706, 1195
AsuC2I CCSGG 2 cut(s) 232, 233
AsuHPI GGTGA 2 cut(s) 317, 408
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 2 cut(s) 231, 378
AvaII GGWCC 1 cut(s) 706
BamHI GGATCC 1 cut(s) 1048
BanII GRGCYC 2 cut(s) 232, 243
BarI GAAGNNNNNNTAC 2 cut(s) 925, 957
BauI CACGAG 1 cut(s) 634
BbsI GAAGAC 3 cut(s) 87, 592, 858
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 571, 1093, 1115
BccI CCATC 3 cut(s) 525, 1132, 1209
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 4 cut(s) 689, 704, 827, 849
BclI TGATCA 1 cut(s) 981
BcnI CCSGG 2 cut(s) 232, 233
BcoDI GTCTC 4 cut(s) 171, 477, 764, 809
BfmI CTRYAG 1 cut(s) 1107
BglI GCCNNNNNGGC 1 cut(s) 1194
BisI GCNGC 4 cut(s) 93, 560, 1104, 1107
BlsI GCNGC 4 cut(s) 94, 561, 1105, 1108
Bme1390I CCNGG 6 cut(s) 232, 233, 689, 704, 827, 849
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 2 cut(s) 231, 378
BmgT120I GGNCC 4 cut(s) 27, 234, 706, 1195
BmiI GGNNCC 7 cut(s) 29, 50, 229, 991, 1050, 1196, 1220
BmrFI CCNGG 6 cut(s) 232, 233, 689, 704, 827, 849
BmsI GCATC 2 cut(s) 633, 1218
BpiI GAAGAC 3 cut(s) 87, 592, 858
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 3 cut(s) 356, 1011, 1076
BpuMI CCSGG 2 cut(s) 232, 233
BsaHI GRCGYC 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 764
BsaJI CCNNGG 5 cut(s) 23, 231, 608, 1174, 1189
BsaWI WCCGGW 2 cut(s) 492, 571
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 1061
BseBI CCWGG 4 cut(s) 689, 704, 827, 849
BseDI CCNNGG 5 cut(s) 23, 231, 608, 1174, 1189
BseGI GGATG 4 cut(s) 36, 283, 489, 648
BseMII CTCAG 4 cut(s) 131, 161, 444, 490
BseNI ACTGG 1 cut(s) 1061
BseRI GAGGAG 6 cut(s) 113, 135, 240, 323, 555, 902
BseXI GCAGC 3 cut(s) 571, 1093, 1115
BsgI GTGCAG 2 cut(s) 614, 930
Bsh1236I CGCG 2 cut(s) 219, 1176
BshFI GGCC 7 cut(s) 22, 28, 236, 607, 928, 1188, 1197
BshTI ACCGGT 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 2 cut(s) 231, 378
BsiSI CCGG 3 cut(s) 232, 493, 572
BsmAI GTCTC 4 cut(s) 171, 477, 764, 809
BsnI GGCC 7 cut(s) 22, 28, 236, 607, 928, 1188, 1197
Bso31I GGTCTC 1 cut(s) 764
BsoBI CYCGRG 2 cut(s) 231, 378
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 232, 243
Bsp143I GATC 3 cut(s) 367, 981, 1048
BspACI CCGC 6 cut(s) 93, 109, 217, 959, 1174, 1176
BspANI GGCC 7 cut(s) 22, 28, 236, 607, 928, 1188, 1197
BspCNI CTCAG 4 cut(s) 130, 160, 445, 489
BspFNI CGCG 2 cut(s) 219, 1176
BspLI GGNNCC 7 cut(s) 29, 50, 229, 991, 1050, 1196, 1220
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 3 cut(s) 375, 1043, 1056
BspT104I TTCGAA 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 764
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 1061
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 5 cut(s) 23, 231, 608, 1174, 1189
BssMI GATC 3 cut(s) 367, 981, 1048
BssNI GRCGYC 1 cut(s) 1012
BssSI CACGAG 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 634
Bst2UI CCWGG 4 cut(s) 689, 704, 827, 849
Bst4CI ACNGT 1 cut(s) 923
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 1012
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 1020, 1111
BstDEI CTNAG 5 cut(s) 117, 147, 453, 476, 1084
BstDSI CCRYGG 1 cut(s) 1174
BstF5I GGATG 4 cut(s) 36, 283, 489, 648
BstFNI CGCG 2 cut(s) 219, 1176
BstHHI GCGC 2 cut(s) 221, 699
BstKTI GATC 3 cut(s) 370, 984, 1051
BstMAI GTCTC 4 cut(s) 171, 477, 764, 809
BstMBI GATC 3 cut(s) 367, 981, 1048
BstMWI GCNNNNNNNGC 6 cut(s) 227, 455, 547, 556, 958, 1194
BstNI CCWGG 4 cut(s) 689, 704, 827, 849
BstNSI RCATGY 1 cut(s) 1022
BstSCI CCNGG 6 cut(s) 230, 231, 687, 702, 825, 847
BstSFI CTRYAG 1 cut(s) 1107
BstUI CGCG 2 cut(s) 219, 1176
BstV1I GCAGC 3 cut(s) 571, 1093, 1115
BstV2I GAAGAC 3 cut(s) 87, 592, 858
BstX2I RGATCY 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 1048
BsuRI GGCC 7 cut(s) 22, 28, 236, 607, 928, 1188, 1197
BtgI CCRYGG 1 cut(s) 1174
BtsCI GGATG 4 cut(s) 36, 283, 489, 648
BtsI GCAGTG 2 cut(s) 818, 947
BtsIMutI CAGTG 2 cut(s) 818, 947
Cac8I GCNNGC 2 cut(s) 1020, 1111
CfoI GCGC 2 cut(s) 221, 699
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 4 cut(s) 27, 234, 706, 1195
Cfr42I CCGCGG 1 cut(s) 1177
Cfr9I CCCGGG 1 cut(s) 231
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 4 cut(s) 428, 805, 933, 1118
CspAI ACCGGT 1 cut(s) 571
CviAII CATG 5 cut(s) 766, 812, 862, 994, 1019
CviQI GTAC 4 cut(s) 428, 805, 933, 1118
DdeI CTNAG 5 cut(s) 117, 147, 453, 476, 1084
DpnI GATC 3 cut(s) 369, 983, 1050
DpnII GATC 3 cut(s) 367, 981, 1048
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 948
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 232, 243
Eco31I GGTCTC 1 cut(s) 764
Eco47I GGWCC 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 586
Eco88I CYCGRG 2 cut(s) 231, 378
EcoICRI GAGCTC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 1252
EcoRII CCWGG 4 cut(s) 687, 702, 825, 847
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 2 cut(s) 232, 243
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 5 cut(s) 769, 815, 865, 997, 1022
FalI AAGNNNNNCTT 6 cut(s) 530, 562, 768, 800, 1020, 1052
FatI CATG 5 cut(s) 765, 811, 861, 993, 1018
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 4 cut(s) 93, 560, 1104, 1107
FokI GGATG 4 cut(s) 23, 290, 476, 655
FriOI GRGCYC 2 cut(s) 232, 243
Fsp4HI GCNGC 4 cut(s) 93, 560, 1104, 1107
GlaI GCGC 2 cut(s) 220, 698
GluI GCNGC 4 cut(s) 93, 560, 1104, 1107
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 7 cut(s) 22, 28, 236, 607, 928, 1188, 1197
HapII CCGG 3 cut(s) 232, 493, 572
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 2 cut(s) 221, 699
Hin1I GRCGYC 1 cut(s) 1012
Hin1II CATG 5 cut(s) 769, 815, 865, 997, 1022
Hin6I GCGC 2 cut(s) 219, 697
HinP1I GCGC 2 cut(s) 219, 697
HindIII AAGCTT 2 cut(s) 332, 680
HinfI GANTC 4 cut(s) 142, 340, 902, 1130
HpaII CCGG 3 cut(s) 232, 493, 572
HphI GGTGA 2 cut(s) 317, 408
Hpy166II GTNNAC 1 cut(s) 935
Hpy188I TCNGA 4 cut(s) 245, 479, 907, 1129
Hpy188III TCNNGA 4 cut(s) 139, 380, 739, 1091
Hpy8I GTNNAC 1 cut(s) 935
Hpy99I CGWCG 3 cut(s) 59, 555, 1017
HpyAV CCTTC 4 cut(s) 633, 645, 854, 951
HpyCH4III ACNGT 1 cut(s) 923
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 8 cut(s) 559, 631, 646, 667, 947, 1022, 1109, 1231
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 455, 547, 556, 958, 1194
HpyF3I CTNAG 5 cut(s) 117, 147, 453, 476, 1084
HpySE526I ACGT 1 cut(s) 553
Hsp92I GRCGYC 1 cut(s) 1012
Hsp92II CATG 5 cut(s) 769, 815, 865, 997, 1022
HspAI GCGC 2 cut(s) 219, 697
Ksp22I TGATCA 1 cut(s) 981
KspI CCGCGG 1 cut(s) 1177
Kzo9I GATC 3 cut(s) 367, 981, 1048
LmnI GCTCC 5 cut(s) 54, 126, 227, 781, 828
Lsp1109I GCAGC 3 cut(s) 571, 1093, 1115
LweI GCATC 2 cut(s) 633, 1218
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 1 cut(s) 1150
MalI GATC 3 cut(s) 369, 983, 1050
MboI GATC 3 cut(s) 367, 981, 1048
MboII GAAGA 9 cut(s) 92, 305, 311, 592, 758, 842, 858, 1125, 1191
MflI RGATCY 1 cut(s) 1048
MhlI GDGCHC 2 cut(s) 232, 243
MluCI AATT 6 cut(s) 112, 205, 315, 1182, 1252, 1294
MlyI GAGTC 2 cut(s) 136, 349
MroXI GAANNNNTTC 2 cut(s) 318, 681
MseI TTAA 4 cut(s) 576, 734, 1167, 1202
MspA1I CMGCKG 2 cut(s) 1106, 1176
MspI CCGG 3 cut(s) 232, 493, 572
MspR9I CCNGG 6 cut(s) 232, 233, 689, 704, 827, 849
MvaI CCWGG 4 cut(s) 689, 704, 827, 849
MvnI CGCG 2 cut(s) 219, 1176
MwoI GCNNNNNNNGC 6 cut(s) 227, 455, 547, 556, 958, 1194
NciI CCSGG 2 cut(s) 232, 233
NdeII GATC 3 cut(s) 367, 981, 1048
NlaIII CATG 5 cut(s) 769, 815, 865, 997, 1022
NlaIV GGNNCC 7 cut(s) 29, 50, 229, 991, 1050, 1196, 1220
NmeAIII GCCGAG 3 cut(s) 4, 262, 1214
NspI RCATGY 1 cut(s) 1022
NspV TTCGAA 1 cut(s) 78
PaeI GCATGC 1 cut(s) 1022
PceI AGGCCT 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 318, 681
PfeI GAWTC 2 cut(s) 902, 1130
PfoI TCCNGGA 1 cut(s) 825
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 4 cut(s) 94, 561, 1105, 1108
PleI GAGTC 2 cut(s) 136, 348
PpsI GAGTC 2 cut(s) 136, 348
PshBI ATTAAT 1 cut(s) 1202
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 4 cut(s) 687, 702, 825, 847
PspGI CCWGG 4 cut(s) 687, 702, 825, 847
PspN4I GGNNCC 7 cut(s) 29, 50, 229, 991, 1050, 1196, 1220
PspPI GGNCC 4 cut(s) 27, 234, 706, 1195
PstI CTGCAG 1 cut(s) 1111
PsuI RGATCY 1 cut(s) 1048
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 4 cut(s) 429, 806, 934, 1119
RsaNI GTAC 4 cut(s) 428, 805, 933, 1118
SacI GAGCTC 1 cut(s) 243
SacII CCGCGG 1 cut(s) 1177
SaqAI TTAA 4 cut(s) 576, 734, 1167, 1202
SatI GCNGC 4 cut(s) 93, 560, 1104, 1107
Sau3AI GATC 3 cut(s) 367, 981, 1048
Sau96I GGNCC 4 cut(s) 27, 234, 706, 1195
SchI GAGTC 2 cut(s) 136, 349
ScrFI CCNGG 6 cut(s) 232, 233, 689, 704, 827, 849
SduI GDGCHC 2 cut(s) 232, 243
SfaNI GCATC 2 cut(s) 633, 1218
SfcI CTRYAG 1 cut(s) 1107
SfiI GGCCNNNNNGGCC 1 cut(s) 1194
Sfr303I CCGCGG 1 cut(s) 1177
SfuI TTCGAA 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 1177
SinI GGWCC 1 cut(s) 706
SmaI CCCGGG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 335, 1026, 1055
SmoI CTYRAG 3 cut(s) 335, 1026, 1055
SphI GCATGC 1 cut(s) 1022
SrfI GCCCGGGC 1 cut(s) 233
Sse9I AATT 6 cut(s) 112, 205, 315, 1182, 1252, 1294
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 6 cut(s) 93, 109, 217, 959, 1174, 1176
SspI AATATT 1 cut(s) 1206
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 6 cut(s) 230, 231, 687, 702, 825, 847
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 923
TaiI ACGT 1 cut(s) 556
TaqI TCGA 4 cut(s) 33, 78, 1242, 1279
TaqII GACCGA 1 cut(s) 788
TasI AATT 6 cut(s) 112, 205, 315, 1182, 1252, 1294
TatI WGTACW 2 cut(s) 427, 804
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 902, 1130
Tru1I TTAA 4 cut(s) 576, 734, 1167, 1202
Tru9I TTAA 4 cut(s) 576, 734, 1167, 1202
TscAI CASTG 2 cut(s) 825, 954
TseI GCWGC 3 cut(s) 559, 1103, 1106
TspDTI ATGAA 5 cut(s) 102, 815, 1010, 1028, 1245
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 2 cut(s) 825, 954
VpaK11BI GGWCC 1 cut(s) 706
VspI ATTAAT 1 cut(s) 1202
XapI RAATTY 2 cut(s) 315, 1252
XceI RCATGY 1 cut(s) 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmaI CCCGGG 1 cut(s) 231
XmnI GAANNNNTTC 2 cut(s) 318, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.