Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Forward (+)

5773512 .. 5776308

Gene Structure 2797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTATGGCCTCTGCTTCTGGTTCTGCTCTTTGCTTCACTGATGCTTCTAGCTCTCTTGCTTTAAGACGCGATTGTGGAGCTCTTTGCTTGCCTCCTAGGACAGTTACGTTTGGATTTGTCGATAAACCTCTTGTCAATCTCGAGCGATTAAGATTATCCACTTTGAAGATTAGAGCATCAAATGCTACTGCTGTGGAGAATGGAAAGCAAGAAGGAAGTGCTGCTGATTCTGATAAAGTTCCAACTCCAGTTGTTATAATCGACCAAGATTCTGACCCTGATGCAACCGTTCTTGAAGTTACATTCGGAGATCGTCTTGGAGCTTTACTTGACACTATGAATGCGCTCAAAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACAACAAATTTGCCATTACTAGAGCAGATAGTGGAAGAAAAGTAGAAGACCCTGAATTGCTTGAGGCCATTCGTCTCACAGTCATAAACAATCTGCTTGAGTTTCATCCTGAATCAAGTTCTCAGTTGGCAATGGGAGCAGCTTTTGGTGTTCTTCCTCCAACTGAACCGATTGACGTGGACATAGCAACACATATAACCATTGAAGATGATGGACCAGACCGCAGTTTACTCTTCATAGAATCAGCGGATAGACCTGGACTATTAGTTGAGCTGGTGAAGATCATTTCAGATATCAGCGTCGCTGTTGAATCTGGAGAATTCGACACCGAGGGTTTGTTGGCTAAGGTGAAGTTTCATGTAAGCTACAGGAACAAAGCCCTAATCAAGCCTCTCCAGCAGGTCCTTGCTAATAGTCTGAGGTACTTCTTGAGGCGTCCATCAACTGACGAGTCAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.29

Weight (kDa)

4.98

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	799
AccII	CGCG	1 cut(s)	72
AciI	CCGC	2 cut(s)	631, 656
AcsI	RAATTY	2 cut(s)	416, 728
AcyI	GRCGYC	1 cut(s)	844
AfaI	GTAC	1 cut(s)	833
AgsI	TTSAA	5 cut(s)	169, 299, 367, 614, 719
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	54, 83, 326, 551, 682, 774
AluI	AGCT	6 cut(s)	54, 83, 326, 551, 682, 774
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	9, 474
ApeKI	GCWGC	2 cut(s)	224, 548
ApoI	RAATTY	2 cut(s)	416, 728
AspA2I	CCTAGG	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	623, 811
AsuHPI	GGTGA	2 cut(s)	697, 769
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	623, 811
AvrII	CCTAGG	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	211, 560
BccI	CCATC	2 cut(s)	614, 856
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	3 cut(s)	51, 99, 429
BfmI	CTRYAG	1 cut(s)	775
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	2 cut(s)	225, 549
BlnI	CCTAGG	1 cut(s)	98
BlsI	GCNGC	2 cut(s)	226, 550
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	2 cut(s)	623, 811
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	623, 811
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	3 cut(s)	34, 188, 274
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	3 cut(s)	234, 744, 788
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	3 cut(s)	491, 527, 859
BsaHI	GRCGYC	1 cut(s)	844
BsaJI	CCNNGG	2 cut(s)	98, 738
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	98, 738
BseGI	GGATG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	545, 818
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	211, 560
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	11, 476
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	488
BsmBI	CGTCTC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	11, 476
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	313, 690
BspACI	CCGC	2 cut(s)	631, 656
BspANI	GGCC	2 cut(s)	11, 476
BspCNI	CTCAG	2 cut(s)	544, 819
BspFNI	CGCG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	98, 738
BssMI	GATC	2 cut(s)	313, 690
BssNI	GRCGYC	1 cut(s)	844
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	106, 292, 490
Bst6I	CTCTTC	1 cut(s)	647
BstACI	GRCGYC	1 cut(s)	844
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	92, 407
BstDEI	CTNAG	3 cut(s)	531, 753, 827
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	316, 693
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	313, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 545, 805
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	775
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	211, 560
BstV2I	GAAGAC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	11, 476
BtrI	CACGTC	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	92, 407
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	623, 811
CseI	GACGC	3 cut(s)	78, 697, 833
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	1 cut(s)	767
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	3 cut(s)	531, 753, 827
DpnI	GATC	2 cut(s)	315, 692
DpnII	GATC	2 cut(s)	313, 690
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	623, 811
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	664
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	1 cut(s)	770
FaiI	YATR	9 cut(s)	8, 260, 341, 494, 593, 603, 605, 647, 768
FatI	CATG	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	225, 549
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	225, 549
FspBI	CTAG	3 cut(s)	51, 99, 429
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	2 cut(s)	225, 549
GsuI	CTGGAG	3 cut(s)	234, 744, 788
HaeIII	GGCC	2 cut(s)	11, 476
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	3 cut(s)	78, 697, 833
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	1 cut(s)	770
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	7 cut(s)	230, 272, 395, 521, 650, 719, 860
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	697, 769
Hpy166II	GTNNAC	3 cut(s)	388, 589, 638
Hpy188I	TCNGA	6 cut(s)	235, 277, 311, 700, 828, 872
Hpy188III	TCNNGA	5 cut(s)	143, 296, 518, 723, 838
Hpy8I	GTNNAC	3 cut(s)	388, 589, 638
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	3 cut(s)	106, 292, 490
HpyCH4IV	ACGT	2 cut(s)	110, 585
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 545, 805
HpyF3I	CTNAG	3 cut(s)	531, 753, 827
HpySE526I	ACGT	2 cut(s)	110, 585
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	1 cut(s)	770
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	313, 690
LmnI	GCTCC	3 cut(s)	80, 323, 545
Lsp1109I	GCAGC	2 cut(s)	211, 560
LweI	GCATC	3 cut(s)	34, 188, 274
MaeI	CTAG	3 cut(s)	51, 99, 429
MaeII	ACGT	2 cut(s)	110, 585
MaeIII	GTNAC	2 cut(s)	106, 301
MalI	GATC	2 cut(s)	315, 692
MboI	GATC	2 cut(s)	313, 690
MboII	GAAGA	8 cut(s)	181, 390, 456, 467, 554, 626, 634, 700
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	3 cut(s)	416, 464, 728
MlyI	GAGTC	1 cut(s)	869
MmeI	TCCRAC	2 cut(s)	269, 593
MnlI	CCTC	9 cut(s)	22, 105, 141, 466, 576, 733, 810, 822, 834
MseI	TTAA	2 cut(s)	65, 152
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	666
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	185, 545, 805
NdeII	GATC	2 cut(s)	313, 690
NlaIII	CATG	1 cut(s)	770
PaeR7I	CTCGAG	1 cut(s)	143
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	6 cut(s)	230, 272, 395, 521, 650, 719
PkrI	GCNGC	2 cut(s)	226, 550
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
PpuMI	RGGWCCY	1 cut(s)	811
PsiI	TTATAA	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspPI	GGNCC	2 cut(s)	623, 811
PspPPI	RGGWCCY	1 cut(s)	811
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	65, 152
SatI	GCNGC	2 cut(s)	225, 549
Sau3AI	GATC	2 cut(s)	313, 690
Sau96I	GGNCC	2 cut(s)	623, 811
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	3 cut(s)	34, 188, 274
SfcI	CTRYAG	1 cut(s)	775
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	623, 811
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	4 cut(s)	143, 470, 506, 838
SmoI	CTYRAG	4 cut(s)	143, 470, 506, 838
Sse9I	AATT	3 cut(s)	416, 464, 728
SsiI	CCGC	2 cut(s)	631, 656
SspMI	CTAG	3 cut(s)	51, 99, 429
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	106, 292, 490
TaiI	ACGT	2 cut(s)	113, 588
TaqI	TCGA	4 cut(s)	123, 144, 264, 732
TasI	AATT	3 cut(s)	416, 464, 728
TfiI	GAWTC	6 cut(s)	230, 272, 395, 521, 650, 719
Tru1I	TTAA	2 cut(s)	65, 152
Tru9I	TTAA	2 cut(s)	65, 152
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	224, 548
TspDTI	ATGAA	4 cut(s)	356, 503, 634, 755
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	623, 811
XapI	RAATTY	2 cut(s)	416, 728
XhoI	CTCGAG	1 cut(s)	143
XmaJI	CCTAGG	1 cut(s)	98
XspI	CTAG	3 cut(s)	51, 99, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.