Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Reverse (-)

32965423 .. 32965650

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0297200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTACTATGCCATGGGCCGGGTTCACGACCCACCATGGCGGGGCTCATTTGGGATGCCACCCCGGGCACCCAGGGCCCTGGACAAGGCCAGCACAGCCCAACTATTTACACACAGGAGAACTGATATGGCATCAGAAGAACAACTAGTGTCCCACATCGAAGATGGGGGAGACTTCCTTGACATGCTCGAGTATAAAGGCATTGGCACAACCACCTTTTACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

5.81

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AciI	CCGC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	18, 41, 85, 222
AhlI	ACTAGT	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	71, 78
Alw26I	GTCTC	1 cut(s)	165
Ama87I	CYCGRG	2 cut(s)	63, 188
AoxI	GGCC	3 cut(s)	16, 75, 87
ApaI	GGGCCC	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	16, 75, 76
AsuC2I	CCSGG	3 cut(s)	20, 64, 65
AvaI	CYCGRG	2 cut(s)	63, 188
BaeGI	GKGCMC	2 cut(s)	70, 79
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	47, 79
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	73, 80
BcnI	CCSGG	3 cut(s)	20, 64, 65
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	1 cut(s)	146
Bme1390I	CCNGG	5 cut(s)	20, 64, 65, 73, 80
BmeT110I	CYCGRG	2 cut(s)	63, 188
BmgT120I	GGNCC	3 cut(s)	16, 75, 76
BmiI	GGNNCC	2 cut(s)	69, 77
BmrFI	CCNGG	5 cut(s)	20, 64, 65, 73, 80
BmsI	GCATC	2 cut(s)	45, 140
BpuMI	CCSGG	3 cut(s)	20, 64, 65
BsaJI	CCNNGG	7 cut(s)	12, 35, 62, 63, 71, 72, 78
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 41, 85, 222
BseBI	CCWGG	2 cut(s)	73, 80
BseDI	CCNNGG	7 cut(s)	12, 35, 62, 63, 71, 72, 78
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	18, 41, 85, 222
BseSI	GKGCMC	2 cut(s)	70, 79
BshFI	GGCC	3 cut(s)	18, 77, 89
BshNI	GGYRCC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	63, 188
BsiSI	CCGG	2 cut(s)	19, 64
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	4 cut(s)	18, 41, 85, 222
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	18, 77, 89
BsoBI	CYCGRG	2 cut(s)	63, 188
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	47, 70, 79
Bsp19I	CCATGG	2 cut(s)	12, 35
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	18, 77, 89
BspLI	GGNNCC	2 cut(s)	69, 77
BspT107I	GGYRCC	1 cut(s)	67
BssECI	CCNNGG	7 cut(s)	12, 35, 62, 63, 71, 72, 78
BssT1I	CCWWGG	2 cut(s)	12, 35
Bst2UI	CCWGG	2 cut(s)	73, 80
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	12, 35
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 95
BstNI	CCWGG	2 cut(s)	73, 80
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	5 cut(s)	18, 62, 63, 71, 78
BstSLI	GKGCMC	2 cut(s)	70, 79
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	18, 77, 89
BtgI	CCRYGG	2 cut(s)	12, 35
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	16, 75, 76
Cfr9I	CCCGGG	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	13, 36, 184
CviJI	RGCY	5 cut(s)	18, 45, 77, 89, 98
CviKI_1	RGCY	5 cut(s)	18, 45, 77, 89, 98
CviQI	GTAC	1 cut(s)	4
Eco130I	CCWWGG	2 cut(s)	12, 35
Eco24I	GRGCYC	2 cut(s)	47, 79
Eco88I	CYCGRG	2 cut(s)	63, 188
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	2 cut(s)	75, 76
EcoRII	CCWGG	2 cut(s)	71, 78
EcoT14I	CCWWGG	2 cut(s)	12, 35
EcoT38I	GRGCYC	2 cut(s)	47, 79
ErhI	CCWWGG	2 cut(s)	12, 35
FaeI	CATG	3 cut(s)	16, 39, 187
FaiI	YATR	6 cut(s)	9, 14, 37, 128, 185, 195
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	12, 35, 183
FauI	CCCGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	2 cut(s)	47, 79
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	18, 77, 89
HapII	CCGG	2 cut(s)	19, 64
Hin1II	CATG	3 cut(s)	16, 39, 187
HpaII	CCGG	2 cut(s)	19, 64
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 95
Hsp92II	CATG	3 cut(s)	16, 39, 187
LpnPI	CCDG	8 cut(s)	32, 58, 65, 77, 85, 92, 100, 103
LweI	GCATC	2 cut(s)	45, 140
MaeI	CTAG	1 cut(s)	146
MboII	GAAGA	2 cut(s)	149, 173
MhlI	GDGCHC	3 cut(s)	47, 70, 79
MspI	CCGG	2 cut(s)	19, 64
MspR9I	CCNGG	5 cut(s)	20, 64, 65, 73, 80
MvaI	CCWGG	2 cut(s)	73, 80
MwoI	GCNNNNNNNGC	2 cut(s)	74, 95
NciI	CCSGG	3 cut(s)	20, 64, 65
NcoI	CCATGG	2 cut(s)	12, 35
NlaIII	CATG	3 cut(s)	16, 39, 187
NlaIV	GGNNCC	2 cut(s)	69, 77
NspI	RCATGY	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	188
PasI	CCCWGGG	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	71, 78
PspGI	CCWGG	2 cut(s)	71, 78
PspN4I	GGNNCC	2 cut(s)	69, 77
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	16, 75, 76
PspXI	VCTCGAGB	1 cut(s)	188
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	16, 75, 76
ScrFI	CCNGG	5 cut(s)	20, 64, 65, 73, 80
SduI	GDGCHC	3 cut(s)	47, 70, 79
SetI	ASST	1 cut(s)	218
SfaNI	GCATC	2 cut(s)	45, 140
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SpeI	ACTAGT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	5 cut(s)	18, 62, 63, 71, 78
StyI	CCWWGG	2 cut(s)	12, 35
TaqI	TCGA	2 cut(s)	159, 189
TatI	WGTACW	1 cut(s)	3
TspMI	CCCGGG	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	188
XmaI	CCCGGG	1 cut(s)	63
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.