Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Forward (+)

44439610 .. 44443877

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTGTGGCTATGGCTTCTTGCAGTCTTGGGCTTAGCTTGAACACTAGTAATTCTAGTTTGAAGAAACCACTTGTAAACCCATTACCAACAGGGGCTTTGCTGGAAGGCTCCCCTGTGTTTGGTTCTAAAAGCATCAGCATTGTTCAGAAGGGAAGATGGCTATCATCATCAGCTTCAATAATTGCACAAGCATCATCTGCTACAGCTGTGGAGGATGGTAAGCCAGATGAAAGTGACGTGATTCCAGTTCCCAAAGTTATCATTGACCAGGATTCTGATCCAGATGCAACTGTGGTGGAGATAACATTTGGAGATCGGCTCGGGGCTCTTCTTGATACTATGAGTGCGCTTAAGAACCTTGGCCTGAACGTTGTCAAGGCCAATGTGTTTCTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATTACTAGAGCAGATACTGGTAGAAAAGTAGATGATCCAGAGTTGCTTGAGGCTATTCGTTTGACAATTATAAATAATCTGATAGAGTATCATCCGGTATTCTTTCTAATTATTTGCTTTTTCCTTGAGATAATATTTTGTGGAAAACTTGTTTTAGGATTTTCTGTAGTTGTAAGCTTTCTTACTGCATTAATCTGTGTCCAGGAATCAAGTTCCCAATTAGCGATGGGAACAGCATTTGGAATTGTGCCACCACCACAACAGGTTGATGTGGATATAGCAACCCGTATACGCATTTATGACGACGGCCCCAACCGAAGTTTGCTTACTGTGGAGTCAGCTGATCGCCCTGGATTACTGGTGGATCTTGTAAAGATTATAACTGACATAAGCGTTGCTGTTGAGTCAGGAGAATTTGACACCGAGGGGATGTTGGCCAAAGCAAAGTTTCATGTTAGCTATAGGGGTAAACCTATCATCAAGCCTCTCCAGCAGGTAAGCTTACAATATGGAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

33.72

Weight (kDa)

5.07

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	497, 806
Acc36I	ACCTGC	1 cut(s)	910
AccI	GTMKAC	1 cut(s)	715
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	3 cut(s)	275, 455, 798
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	839
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	43, 64, 180
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	270, 627, 775
AluBI	AGCT	7 cut(s)	39, 176, 209, 603, 767, 885, 927
AluI	AGCT	7 cut(s)	39, 176, 209, 603, 767, 885, 927
AlwI	GGATC	3 cut(s)	275, 455, 798
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	4 cut(s)	364, 381, 733, 861
ApoI	RAATTY	1 cut(s)	839
AseI	ATTAAT	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
BccI	CCATC	3 cut(s)	153, 212, 646
BceAI	ACGGC	1 cut(s)	748
BciT130I	CCWGG	3 cut(s)	272, 629, 777
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	48, 57, 432
BfmI	CTRYAG	3 cut(s)	204, 591, 886
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	272, 629, 777
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	2 cut(s)	112, 736
BmrFI	CCNGG	3 cut(s)	272, 629, 777
BmsI	GCATC	3 cut(s)	144, 203, 277
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	899
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	494, 572
BsaBI	GATNNNNATC	2 cut(s)	163, 279
BsaJI	CCNNGG	3 cut(s)	361, 775, 849
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	3 cut(s)	248, 448, 789
Bse8I	GATNNNNATC	2 cut(s)	163, 279
BseBI	CCWGG	3 cut(s)	272, 629, 777
BseDI	CCNNGG	3 cut(s)	361, 775, 849
BseGI	GGATG	3 cut(s)	223, 517, 861
BseJI	GATNNNNATC	2 cut(s)	163, 279
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	3 cut(s)	248, 448, 789
BshFI	GGCC	4 cut(s)	366, 383, 735, 863
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	4 cut(s)	366, 383, 735, 863
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	280, 316, 460, 769, 790
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	366, 383, 735, 863
BspLI	GGNNCC	2 cut(s)	112, 736
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	3 cut(s)	275, 455, 798
BspQI	GCTCTTC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	248, 448, 789
BssECI	CCNNGG	3 cut(s)	361, 775, 849
BssMI	GATC	5 cut(s)	280, 316, 460, 769, 790
BssNAI	GTATAC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	716
Bst2UI	CCWGG	3 cut(s)	272, 629, 777
Bst4CI	ACNGT	2 cut(s)	295, 757
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	223, 517, 861
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	5 cut(s)	283, 319, 463, 772, 793
BstMBI	GATC	5 cut(s)	280, 316, 460, 769, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 916
BstNI	CCWGG	3 cut(s)	272, 629, 777
BstSCI	CCNGG	3 cut(s)	270, 627, 775
BstSFI	CTRYAG	3 cut(s)	204, 591, 886
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BstZ17I	GTATAC	1 cut(s)	716
BsuRI	GGCC	4 cut(s)	366, 383, 735, 863
BtgZI	GCGATG	1 cut(s)	665
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	223, 517, 861
BveI	ACCTGC	1 cut(s)	910
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	734
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	878
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	282, 318, 462, 771, 792
DpnII	GATC	5 cut(s)	280, 316, 460, 769, 790
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	270, 627, 775
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	881
FatI	CATG	1 cut(s)	877
FblI	GTMKAC	1 cut(s)	715
FokI	GGATG	3 cut(s)	230, 504, 868
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	3 cut(s)	48, 57, 432
GlaI	GCGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	899
HaeIII	GGCC	4 cut(s)	366, 383, 735, 863
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	1 cut(s)	881
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	2 cut(s)	601, 925
HinfI	GANTC	6 cut(s)	244, 275, 398, 632, 761, 830
HpaII	CCGG	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	79, 716, 896
Hpy188I	TCNGA	3 cut(s)	150, 280, 507
Hpy188III	TCNNGA	6 cut(s)	284, 335, 395, 405, 464, 834
Hpy8I	GTNNAC	3 cut(s)	79, 716, 896
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	101, 145
HpyCH4III	ACNGT	2 cut(s)	295, 757
HpyCH4IV	ACGT	2 cut(s)	240, 372
HpyCH4V	TGCA	4 cut(s)	24, 188, 290, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 916
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	240, 372
Hsp92II	CATG	1 cut(s)	881
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	5 cut(s)	280, 316, 460, 769, 790
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	116
LweI	GCATC	3 cut(s)	144, 203, 277
MaeI	CTAG	3 cut(s)	48, 57, 432
MaeII	ACGT	2 cut(s)	240, 372
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	282, 318, 462, 771, 792
MboI	GATC	5 cut(s)	280, 316, 460, 769, 790
MboII	GAAGA	4 cut(s)	76, 168, 323, 393
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	7 cut(s)	52, 183, 492, 534, 644, 669, 839
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	2 cut(s)	770, 839
MnlI	CCTC	4 cut(s)	208, 469, 844, 921
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	3 cut(s)	354, 617, 946
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	2 cut(s)	209, 767
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	3 cut(s)	272, 629, 777
MvaI	CCWGG	3 cut(s)	272, 629, 777
MwoI	GCNNNNNNNGC	2 cut(s)	200, 916
NdeII	GATC	5 cut(s)	280, 316, 460, 769, 790
NlaIII	CATG	1 cut(s)	881
NlaIV	GGNNCC	2 cut(s)	112, 736
NmuCI	GTSAC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	244, 275, 398, 632
PfoI	TCCNGGA	1 cut(s)	627
PleI	GAGTC	2 cut(s)	769, 838
PpsI	GAGTC	2 cut(s)	769, 838
PshBI	ATTAAT	1 cut(s)	617
PsiI	TTATAA	2 cut(s)	497, 806
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	270, 627, 775
PspGI	CCWGG	3 cut(s)	270, 627, 775
PspN4I	GGNNCC	2 cut(s)	112, 736
PspPI	GGNCC	1 cut(s)	734
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	790
PvuII	CAGCTG	2 cut(s)	209, 767
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	354, 617, 946
Sau3AI	GATC	5 cut(s)	280, 316, 460, 769, 790
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	2 cut(s)	770, 839
ScrFI	CCNGG	3 cut(s)	272, 629, 777
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	3 cut(s)	144, 203, 277
SfcI	CTRYAG	3 cut(s)	204, 591, 886
SmlI	CTYRAG	3 cut(s)	353, 473, 551
SmoI	CTYRAG	3 cut(s)	353, 473, 551
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	52, 183, 492, 534, 644, 669, 839
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	3 cut(s)	48, 57, 432
StyD4I	CCNGG	3 cut(s)	270, 627, 775
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	295, 757
TaiI	ACGT	2 cut(s)	243, 375
TasI	AATT	7 cut(s)	52, 183, 492, 534, 644, 669, 839
TfiI	GAWTC	4 cut(s)	244, 275, 398, 632
Tru1I	TTAA	3 cut(s)	354, 617, 946
Tru9I	TTAA	3 cut(s)	354, 617, 946
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	246, 866
Vha464I	CTTAAG	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	3 cut(s)	48, 57, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.