Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Reverse (-)

14973578 .. 14976852

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTGTGGCTATGGCTTCTTGCGGTGTTGGGGTAAACTTTAACAGTAACTCCAGTTTGAAAAAATACCTTGCAAGTCCAGCACCAGCTGGGGCTATGGCAGAAGCCTCCTTTGGGTTTGCTCATAAACGCTTCTGCATTGTGCACAAAGGAAGATCATTATCTTCATCAACCTCAATTACTCCGCGAGCATCTTCTGCTACAGCTGTGGAGGATGGTAAATCTGATGGAAGTCCAAGTGAATCTGACACCGTTCCGATTCCTAAGGTTATTATTGACCAAGATTCTGATCCAGATGCAACGGTGGTGGAGATAACCTTTGGAGACCGGCTTGGAGCTCTTCTCGATACTATGAGTGCGCTTAGAAACCTCGGCTTGAATGTTGTCAAGGCCAATGTCTATTTGGATTCTTCTGGGAAGCATAACAAGTTTGCCATCACTAGAGCTGATACTGGTAGGAAAGTAGAAGATCCAGAACTACTTGAGGCTATTCGATTGACAATTATAAATAATCTGATAGAGTATCATCCGGAATCAAGTTCCCAGTTAGCGATGGGAGCAGCGTTTGGAATTGGGCCTCGACCAGAACAGGTTGATGTGGACATAGCAACCCACATAAGCGTGAAAGATGATGGCCCCACCCGAAGTTTGCTTTATGTGGAGTCAGTAGATCGATCAGGATTACTGGTGGATCTTGTAAAGATTGTAACTGACATTGATGTTGCTGTTGAATCAGGAGAATTCGACACAGAGGGGTTGTTGGCGAAGGCAAAATTTCATGTTAACTACAGGGGTAAACCCCTCATCAAGCCTCTTCAGCAGGTTCTTGCTAACAGCTTACGATATTATTTGAGGCGACCATCAACCGAGGAGTCCAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.52

Weight (kDa)

5.58

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	811
AccII	CGCG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	2 cut(s)	24, 185
AclWI	GGATC	3 cut(s)	284, 464, 699
AcsI	RAATTY	2 cut(s)	740, 773
AcuI	CTGAAG	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	61, 379, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	89, 206, 338, 446, 837
AluI	AGCT	5 cut(s)	89, 206, 338, 446, 837
Alw21I	GWGCWC	2 cut(s)	147, 340
Alw26I	GTCTC	1 cut(s)	318
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	3 cut(s)	284, 464, 699
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	3 cut(s)	390, 575, 634
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	740, 773
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	575, 635
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	147, 340
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	6 cut(s)	209, 221, 443, 547, 626, 868
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	201, 787
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	575, 635
BmiI	GGNNCC	1 cut(s)	637
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	2 cut(s)	200, 286
BmuI	ACTGGG	1 cut(s)	538
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	673
BsaBI	GATNNNNATC	2 cut(s)	160, 288
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	370, 867
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	5 cut(s)	54, 457, 544, 690, 876
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	2 cut(s)	160, 288
BseAI	TCCGGA	1 cut(s)	529
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	370, 867
BseGI	GGATG	2 cut(s)	220, 526
BseJI	GATNNNNATC	2 cut(s)	160, 288
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseNI	ACTGG	5 cut(s)	54, 457, 544, 690, 876
BseRI	GAGGAG	1 cut(s)	884
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	392, 577, 636
BshVI	ATCGAT	1 cut(s)	673
BsiHKAI	GWGCWC	2 cut(s)	147, 340
BsiSI	CCGG	2 cut(s)	328, 530
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	392, 577, 636
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	147, 340
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
BspACI	CCGC	2 cut(s)	24, 185
BspANI	GGCC	3 cut(s)	392, 577, 636
BspDI	ATCGAT	1 cut(s)	673
BspEI	TCCGGA	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	284, 464, 699
BspQI	GCTCTTC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	5 cut(s)	54, 457, 544, 690, 876
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	370, 867
BssMI	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
Bst4CI	ACNGT	3 cut(s)	47, 253, 304
Bst6I	CTCTTC	2 cut(s)	345, 819
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	264, 362
BstF5I	GGATG	2 cut(s)	220, 526
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	6 cut(s)	158, 292, 472, 673, 677, 694
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
BstSFI	CTRYAG	2 cut(s)	201, 787
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	469, 691
BstYI	RGATCY	2 cut(s)	469, 691
Bsu15I	ATCGAT	1 cut(s)	673
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	392, 577, 636
BsuTUI	ATCGAT	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	220, 526
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	575, 635
ClaI	ATCGAT	1 cut(s)	673
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	1 cut(s)	779
DdeI	CTNAG	2 cut(s)	264, 362
DpnI	GATC	6 cut(s)	157, 291, 471, 672, 676, 693
DpnII	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
Eam1104I	CTCTTC	2 cut(s)	345, 819
EarI	CTCTTC	2 cut(s)	345, 819
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	1 cut(s)	782
FatI	CATG	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	2 cut(s)	227, 513
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	3 cut(s)	392, 577, 636
HapII	CCGG	2 cut(s)	328, 530
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	8 cut(s)	242, 259, 284, 407, 533, 662, 731, 872
HpaI	GTTAAC	1 cut(s)	784
HpaII	CCGG	2 cut(s)	328, 530
Hpy166II	GTNNAC	5 cut(s)	37, 145, 601, 784, 797
Hpy188I	TCNGA	5 cut(s)	226, 247, 258, 289, 516
Hpy188III	TCNNGA	6 cut(s)	293, 344, 473, 530, 678, 735
Hpy8I	GTNNAC	5 cut(s)	37, 145, 601, 784, 797
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	3 cut(s)	47, 253, 304
HpyCH4V	TGCA	4 cut(s)	74, 138, 145, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
HpyF3I	CTNAG	2 cut(s)	264, 362
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	335, 557
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	2 cut(s)	200, 286
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	47, 706
MalI	GATC	6 cut(s)	157, 291, 471, 672, 676, 693
MboI	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
MboII	GAAGA	7 cut(s)	156, 165, 186, 332, 402, 479, 806
MflI	RGATCY	2 cut(s)	469, 691
MhlI	GDGCHC	2 cut(s)	147, 340
MluCI	AATT	5 cut(s)	177, 501, 570, 740, 773
MlyI	GAGTC	2 cut(s)	671, 881
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	2 cut(s)	42, 783
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	2 cut(s)	89, 206
MspI	CCGG	2 cut(s)	328, 530
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
NdeII	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	637
NmeAIII	GCCGAG	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	6 cut(s)	242, 259, 284, 407, 533, 731
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	670, 880
PpsI	GAGTC	2 cut(s)	670, 880
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	2 cut(s)	575, 635
PsuI	RGATCY	2 cut(s)	469, 691
PvuII	CAGCTG	2 cut(s)	89, 206
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	42, 783
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	6 cut(s)	155, 289, 469, 670, 674, 691
Sau96I	GGNCC	2 cut(s)	575, 635
SchI	GAGTC	2 cut(s)	671, 881
SduI	GDGCHC	2 cut(s)	147, 340
SfaNI	GCATC	2 cut(s)	200, 286
SfcI	CTRYAG	2 cut(s)	201, 787
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	177, 501, 570, 740, 773
SsiI	CCGC	2 cut(s)	24, 185
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	47, 253, 304
TaqI	TCGA	5 cut(s)	345, 493, 580, 673, 744
TasI	AATT	5 cut(s)	177, 501, 570, 740, 773
TfiI	GAWTC	6 cut(s)	242, 259, 284, 407, 533, 731
Tru1I	TTAA	2 cut(s)	42, 783
Tru9I	TTAA	2 cut(s)	42, 783
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	156, 767
VneI	GTGCAC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	740, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.