Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Forward (+)

51563637 .. 51568339

Gene Structure 4703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG350800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTGTGGCTATGGCTTCTTGCAGTCTTGGGCTTAGCTTGAACACTAGTAATTCTAGTTTGAAGAAACCACTTGTAAACCCATTACCAACTGGGGCTTTGCTGGAAGGCTCTCCTGTGTTTGGTTCTAAAAGCATCAGCATTGTTCAGAAGGGAAGATGGCTATCATCATCAGCTTCAATAATTGCACAAGCATCATCTGCTACAGCTGTGGAGGATGGTAAGCCAGATGAAAGTGACGTGATTCCAGTTCCCAAAGTTATCATTGACCAGGATTCTGATCCAGATGCAACTGTGGTGGAGATAACCTTTGGAGATCGGCTCGGGGCTCTTCTTGATACTATGAGTGCGCTTAAGAACCTTGGCCTGAACGTTGTCAAGGCCAATGTGTTTCTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATTACTAGAGCAGATACTGGTAGAAAAGTAGATGATCCGGAGTTGCTTGAGGCTATTCGTTTGACAATTATAAATAATCTGATACAGTATCATCCGGTATTCTTTCTAATTATTTGCTTTTTCCTTGAGATAATATTTTGTGGAAAACTTGTTTTGGGATTATCTGTAGTTGTAAGCTTTCTTACTGCATTAATCTGTGGTCCAGGAATCAAGTTCCCAATTAGCGATGGGAACAGCATTTGGAATTGTGCCACCACCACAACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

24.41

Weight (kDa)

5.37

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	463
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	2 cut(s)	275, 455
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	43, 64, 180
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	270, 628
AluBI	AGCT	4 cut(s)	39, 176, 209, 603
AluI	AGCT	4 cut(s)	39, 176, 209, 603
AlwI	GGATC	2 cut(s)	275, 455
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	463
AoxI	GGCC	2 cut(s)	364, 381
AseI	ATTAAT	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	331
BccI	CCATC	3 cut(s)	153, 212, 647
BciT130I	CCWGG	2 cut(s)	272, 630
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	48, 57, 432
BfmI	CTRYAG	2 cut(s)	204, 591
BfrI	CTTAAG	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	272, 630
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	626
BmrFI	CCNGG	2 cut(s)	272, 630
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	144, 203, 277
BmuI	ACTGGG	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	494, 572
BsaBI	GATNNNNATC	2 cut(s)	163, 279
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	2 cut(s)	463, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	3 cut(s)	97, 248, 448
Bse8I	GATNNNNATC	2 cut(s)	163, 279
BseAI	TCCGGA	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	272, 630
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	223, 517
BseJI	GATNNNNATC	2 cut(s)	163, 279
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	3 cut(s)	97, 248, 448
BshFI	GGCC	2 cut(s)	366, 383
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	464, 521
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	2 cut(s)	366, 383
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	463
Bsp143I	GATC	3 cut(s)	280, 316, 460
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	366, 383
BspEI	TCCGGA	1 cut(s)	463
BspPI	GGATC	2 cut(s)	275, 455
BspQI	GCTCTTC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	97, 248, 448
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	280, 316, 460
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	272, 630
Bst4CI	ACNGT	2 cut(s)	295, 513
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	223, 517
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	283, 319, 463
BstMBI	GATC	3 cut(s)	280, 316, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	2 cut(s)	272, 630
BstSCI	CCNGG	2 cut(s)	270, 628
BstSFI	CTRYAG	2 cut(s)	204, 591
BsuRI	GGCC	2 cut(s)	366, 383
BtgZI	GCGATG	1 cut(s)	666
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	223, 517
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	3 cut(s)	282, 318, 462
DpnII	GATC	3 cut(s)	280, 316, 460
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	270, 628
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	361
FaiI	YATR	3 cut(s)	14, 344, 497
FokI	GGATG	2 cut(s)	230, 504
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	3 cut(s)	48, 57, 432
GlaI	GCGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	366, 383
HapII	CCGG	2 cut(s)	464, 521
HhaI	GCGC	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	4 cut(s)	244, 275, 398, 633
HpaII	CCGG	2 cut(s)	464, 521
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	150, 280, 507
Hpy188III	TCNNGA	5 cut(s)	284, 335, 395, 405, 464
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	101, 145
HpyCH4III	ACNGT	2 cut(s)	295, 513
HpyCH4IV	ACGT	2 cut(s)	240, 372
HpyCH4V	TGCA	4 cut(s)	24, 188, 290, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	240, 372
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	280, 316, 460
LguI	GCTCTTC	1 cut(s)	336
LweI	GCATC	3 cut(s)	144, 203, 277
MaeI	CTAG	3 cut(s)	48, 57, 432
MaeII	ACGT	2 cut(s)	240, 372
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	282, 318, 462
MboI	GATC	3 cut(s)	280, 316, 460
MboII	GAAGA	4 cut(s)	76, 168, 323, 393
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	6 cut(s)	52, 183, 492, 534, 645, 670
MnlI	CCTC	2 cut(s)	208, 469
MroI	TCCGGA	1 cut(s)	463
MseI	TTAA	2 cut(s)	354, 617
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	464, 521
MspR9I	CCNGG	2 cut(s)	272, 630
MvaI	CCWGG	2 cut(s)	272, 630
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	3 cut(s)	280, 316, 460
NmuCI	GTSAC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	244, 275, 398, 633
PfoI	TCCNGGA	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	617
PsiI	TTATAA	1 cut(s)	497
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	270, 628
PspGI	CCWGG	2 cut(s)	270, 628
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	354, 617
Sau3AI	GATC	3 cut(s)	280, 316, 460
Sau96I	GGNCC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	272, 630
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	9 cut(s)	41, 178, 211, 243, 311, 363, 375, 605, 694
SfaNI	GCATC	3 cut(s)	144, 203, 277
SfcI	CTRYAG	2 cut(s)	204, 591
SinI	GGWCC	1 cut(s)	626
SmlI	CTYRAG	3 cut(s)	353, 473, 551
SmoI	CTYRAG	3 cut(s)	353, 473, 551
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	6 cut(s)	52, 183, 492, 534, 645, 670
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	3 cut(s)	48, 57, 432
StyD4I	CCNGG	2 cut(s)	270, 628
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	295, 513
TaiI	ACGT	2 cut(s)	243, 375
TasI	AATT	6 cut(s)	52, 183, 492, 534, 645, 670
TfiI	GAWTC	4 cut(s)	244, 275, 398, 633
Tru1I	TTAA	2 cut(s)	354, 617
Tru9I	TTAA	2 cut(s)	354, 617
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	626
VspI	ATTAAT	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	3 cut(s)	48, 57, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.