Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Reverse (-)

28722944 .. 28726955

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1231700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGTGGCTATGGCTTCTTGCAGTGTTGGGGTAAACTTTAACAGTAACTCCAGTTTGAAAAAATCCCTAGCAATTCCAGCACCAGCTGGGGCTATGGCAGAAGCATCCTTTGGGTTTGCTCCTACAAGCTTCTGCATTGTGCACAAGGGAAGATCATTATCTTCATCAACCTCAATTACTCCGCGAGCATCTTCTGCTACAGCTGTGGAGGATGGTAAATCTGATGGAAGTCCAAGTGAATCTGACGCCGTTCCGATTCCGAAGGTTATTATTGACCAAGATTCTGATCCAGATGCAACGGTGGTGGAGATAACCTTTGGAGACCGGCTTGGAGCTCTTCTCGATACTATGAGTGCGCTTAGAAACCTCGGCTTGAATGTTGTCAAGGCCAATGTCTATTTGGATTCTTCTGGGAAGCATAACAAGTTTGCCATCACTAGAGCTGATACTGGTAGGAAGGTAGAAGATCCAGAACTACTTGAGGCTATTCGATTGACGATTATAAATAATCTGATAGAATATCATCCGGAATCAAGTTCCCAGTTAGCGATGGGAGCAGCGTTTGGAATTGTGCCTCCACCAGAACAGGTTGATGTGGACATAGCAACCCACATAAGCGTCAACGATGATGGCCCCACCCGAAGTTTGCTTTATGTGGAGTCAGCAGATCGCCCAGGATTACTGGTGGATCTTGTAAAGATTATAACTGACATTAGTGTTGCTGTTGAATCGGGAGAATTCGACACAGAGGGGTTGTTGGCGAAGGCAAAATTTCATGTTAGCTACAGGGGTAAGCCCCTCATCAAGCCTCTTCAGCAGGTTCTTGCTAACAGCTTACGATATTATTTGAGGCGACCATCAACTGAGGAGTCGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.25

Weight (kDa)

5.1

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	506, 707
Acc36I	ACCTGC	1 cut(s)	811
AccII	CGCG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	284, 464, 699
AcsI	RAATTY	2 cut(s)	740, 773
AcuI	CTGAAG	1 cut(s)	800
AcyI	GRCGYC	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	61, 379, 731
AjnI	CCWGG	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	7 cut(s)	89, 132, 206, 338, 446, 786, 837
AluI	AGCT	7 cut(s)	89, 132, 206, 338, 446, 786, 837
Alw21I	GWGCWC	2 cut(s)	147, 340
Alw26I	GTCTC	1 cut(s)	318
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	3 cut(s)	284, 464, 699
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	2 cut(s)	390, 634
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	740, 773
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	147, 340
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	6 cut(s)	209, 221, 443, 547, 626, 868
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	71, 441
BfmI	CTRYAG	2 cut(s)	201, 787
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	1 cut(s)	678
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	3 cut(s)	116, 200, 286
BmuI	ACTGGG	1 cut(s)	538
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	503
BsaBI	GATNNNNATC	2 cut(s)	160, 288
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	370, 676
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	4 cut(s)	54, 457, 544, 690
Bse8I	GATNNNNATC	2 cut(s)	160, 288
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	2 cut(s)	370, 676
BseGI	GGATG	3 cut(s)	107, 220, 526
BseJI	GATNNNNATC	2 cut(s)	160, 288
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	4 cut(s)	54, 457, 544, 690
BseRI	GAGGAG	1 cut(s)	884
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	392, 636
BsiHKAI	GWGCWC	2 cut(s)	147, 340
BsiSI	CCGG	2 cut(s)	328, 530
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	392, 636
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	147, 340
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	155, 289, 469, 670, 691
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	392, 636
BspCNI	CTCAG	1 cut(s)	859
BspEI	TCCGGA	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	284, 464, 699
BspQI	GCTCTTC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	54, 457, 544, 690
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	370, 676
BssMI	GATC	5 cut(s)	155, 289, 469, 670, 691
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	47, 304
Bst6I	CTCTTC	2 cut(s)	345, 819
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	362, 867
BstF5I	GGATG	3 cut(s)	107, 220, 526
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	158, 292, 472, 673, 694
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	155, 289, 469, 670, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	201, 787
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	469, 691
BstYI	RGATCY	2 cut(s)	469, 691
BsuRI	GGCC	2 cut(s)	392, 636
BtgZI	GCGATG	1 cut(s)	566
BtsCI	GGATG	3 cut(s)	107, 220, 526
BtsI	GCAGTG	2 cut(s)	12, 31
BtsIMutI	CAGTG	2 cut(s)	12, 31
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	2 cut(s)	257, 610
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	1 cut(s)	779
DdeI	CTNAG	2 cut(s)	362, 867
DpnI	GATC	5 cut(s)	157, 291, 471, 672, 693
DpnII	GATC	5 cut(s)	155, 289, 469, 670, 691
Eam1104I	CTCTTC	2 cut(s)	345, 819
EarI	CTCTTC	2 cut(s)	345, 819
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	1 cut(s)	782
FatI	CATG	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	3 cut(s)	94, 227, 513
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	2 cut(s)	71, 441
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	392, 636
HapII	CCGG	2 cut(s)	328, 530
HgaI	GACGC	2 cut(s)	257, 610
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	8 cut(s)	242, 259, 284, 407, 533, 662, 731, 872
HpaII	CCGG	2 cut(s)	328, 530
Hpy166II	GTNNAC	4 cut(s)	37, 145, 601, 625
Hpy188I	TCNGA	6 cut(s)	226, 247, 258, 264, 289, 516
Hpy188III	TCNNGA	5 cut(s)	293, 344, 473, 530, 735
Hpy8I	GTNNAC	4 cut(s)	37, 145, 601, 625
HpyAV	CCTTC	3 cut(s)	259, 454, 760
HpyCH4III	ACNGT	2 cut(s)	47, 304
HpyCH4V	TGCA	4 cut(s)	24, 138, 145, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
HpyF3I	CTNAG	2 cut(s)	362, 867
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	155, 289, 469, 670, 691
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	127, 335, 557
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	3 cut(s)	116, 200, 286
MaeI	CTAG	2 cut(s)	71, 441
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	5 cut(s)	157, 291, 471, 672, 693
MboI	GATC	5 cut(s)	155, 289, 469, 670, 691
MboII	GAAGA	7 cut(s)	156, 165, 186, 332, 402, 479, 806
MflI	RGATCY	2 cut(s)	469, 691
MhlI	GDGCHC	2 cut(s)	147, 340
MluCI	AATT	5 cut(s)	75, 177, 570, 740, 773
MlyI	GAGTC	2 cut(s)	671, 881
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	89, 206
MspI	CCGG	2 cut(s)	328, 530
MspR9I	CCNGG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	4 cut(s)	80, 197, 557, 817
NdeII	GATC	5 cut(s)	155, 289, 469, 670, 691
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	637
NmeAIII	GCCGAG	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	6 cut(s)	242, 259, 284, 407, 533, 731
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	670, 880
PpsI	GAGTC	2 cut(s)	670, 880
PsiI	TTATAA	2 cut(s)	506, 707
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	469, 691
PvuII	CAGCTG	2 cut(s)	89, 206
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	5 cut(s)	155, 289, 469, 670, 691
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	2 cut(s)	671, 881
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	2 cut(s)	147, 340
SfaNI	GCATC	3 cut(s)	116, 200, 286
SfcI	CTRYAG	2 cut(s)	201, 787
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	75, 177, 570, 740, 773
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	71, 441
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	47, 304
TaqI	TCGA	4 cut(s)	345, 493, 744, 875
TasI	AATT	5 cut(s)	75, 177, 570, 740, 773
TfiI	GAWTC	6 cut(s)	242, 259, 284, 407, 533, 731
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	12, 31
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	156, 767
TspRI	CASTG	2 cut(s)	12, 31
VneI	GTGCAC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	740, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	2 cut(s)	71, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.