Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Forward (+)

8620370 .. 8624837

Gene Structure 4468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTGTGGCTATGGCTTCTTGCAGTCTTGGGGTTAACTTGGGTAGTAACTGTAGTTTGAAAAAACCCCTTGCAATTCCATTACAAACTGGGGCTACAGTAGAAGGGTCCTTTGGGTTTGGTTCTAAAAGCTTCTTCATTGTTCAGAAGGGAAGATTGTTATCTTCATCAACTTCAACTACTCCACGAGCCTCTTCTGCTACAGCTGTGGAGGGTGGTAAACCTGATGGAAGTCAAAGTGAAACTGACAAGATCCCAATTCCCAAAGTTATTATTGATCAAGACTCTGACCCAAATGCAACTGTGGTGGAGATAACATTTGGAGACCGGCTGGGGGCTCTTCTTGATACTATGAGTGCGCTTAGGAACCTTGGCCTGAATGTTGTCAAGGCCAATGTCTATTTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATCACCAGAGCTGATACTGGTAGGAAAGTAGAAGATCCAGAATTGCTTGAGGCTATTCGTTTGACAATTATAAATAATCTGATAGAGTATCATCCGGAATCAAGTTCCCAGTTAGCGATGGGAGCAGCGTTTGGAATTGTTCCGCCACCAGAACAGGTTGATGTGGATGTGGCAACCCACATAAGCATCAGTGATGATGGCCCCAACCGAAGTTTGCTTTATGTGGAATCAGCTGATCGCCCTGGATTACTGGTGGATCTTGTAAAGACTGTAACTGACATTGATGTTGCTGTAGAATCAGGAGAATTCGACACTGAGGGGTTGTTGGCCAAGGCAAAGTTTCACGTTAGCTACAGGGGTAAACCTCTCATCAAGCCTCTCCAGCAGGTTCTTGCTAACAGTTTGCGGTATTACTTGAGGCGACCAATGACTGAGGAGGGGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.41

Weight (kDa)

5.34

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	811
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	2 cut(s)	578, 841
AclWI	GGATC	3 cut(s)	247, 464, 699
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	740
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	61, 177
AjnI	CCWGG	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	132, 206, 446, 668, 786
AluI	AGCT	5 cut(s)	132, 206, 446, 668, 786
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	247, 464, 699
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	4 cut(s)	373, 390, 634, 762
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	108, 635
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	4 cut(s)	221, 443, 547, 626
BciT130I	CCWGG	1 cut(s)	678
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	5 cut(s)	52, 96, 201, 726, 787
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	108, 635
BmiI	GGNNCC	3 cut(s)	109, 368, 637
BmrFI	CCNGG	1 cut(s)	678
BmrI	ACTGGG	2 cut(s)	99, 538
BmsI	GCATC	1 cut(s)	630
BmuI	ACTGGG	2 cut(s)	99, 538
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	503, 871
BsaBI	GATNNNNATC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	370, 676, 765
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	4 cut(s)	94, 457, 544, 690
Bse8I	GATNNNNATC	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	370, 676, 765
BseGI	GGATG	2 cut(s)	526, 607
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	741, 858
BseNI	ACTGG	4 cut(s)	94, 457, 544, 690
BseRI	GAGGAG	1 cut(s)	884
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	375, 392, 636, 764
BsiSI	CCGG	2 cut(s)	328, 530
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	4 cut(s)	375, 392, 636, 764
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	252, 277, 469, 670, 691
BspACI	CCGC	2 cut(s)	578, 841
BspANI	GGCC	4 cut(s)	375, 392, 636, 764
BspCNI	CTCAG	2 cut(s)	742, 859
BspEI	TCCGGA	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	109, 368, 637
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	247, 464, 699
BspQI	GCTCTTC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	94, 457, 544, 690
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	370, 676, 765
BssMI	GATC	5 cut(s)	252, 277, 469, 670, 691
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	370, 765
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	5 cut(s)	53, 100, 304, 706, 836
Bst6I	CTCTTC	2 cut(s)	199, 345
BstDEI	CTNAG	3 cut(s)	362, 750, 867
BstF5I	GGATG	2 cut(s)	526, 607
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	255, 280, 472, 673, 694
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	252, 277, 469, 670, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 557, 817
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	5 cut(s)	52, 96, 201, 726, 787
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	252, 469, 691
BstYI	RGATCY	3 cut(s)	252, 469, 691
BsuRI	GGCC	4 cut(s)	375, 392, 636, 764
BtgZI	GCGATG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	526, 607
BtsIMutI	CAGTG	2 cut(s)	631, 747
BveI	ACCTGC	1 cut(s)	811
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	108, 635
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
DdeI	CTNAG	3 cut(s)	362, 750, 867
DpnI	GATC	5 cut(s)	254, 279, 471, 672, 693
DpnII	GATC	5 cut(s)	252, 277, 469, 670, 691
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	199, 345
EarI	CTCTTC	2 cut(s)	199, 345
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	370, 765
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	2 cut(s)	370, 765
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	370, 765
FaiI	YATR	5 cut(s)	14, 353, 506, 617, 657
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	2 cut(s)	513, 614
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	561
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	4 cut(s)	375, 392, 636, 764
HapII	CCGG	2 cut(s)	328, 530
HhaI	GCGC	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	5 cut(s)	284, 407, 533, 662, 731
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	328, 530
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	37, 221, 797
Hpy188I	TCNGA	3 cut(s)	147, 289, 516
Hpy188III	TCNNGA	6 cut(s)	281, 344, 414, 473, 530, 735
Hpy8I	GTNNAC	3 cut(s)	37, 221, 797
HpyAV	CCTTC	2 cut(s)	98, 142
HpyCH4III	ACNGT	5 cut(s)	53, 100, 304, 706, 836
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	3 cut(s)	24, 74, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 557, 817
HpyF3I	CTNAG	3 cut(s)	362, 750, 867
HpySE526I	ACGT	1 cut(s)	780
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	252, 277, 469, 670, 691
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	630
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	2 cut(s)	47, 706
MalI	GATC	5 cut(s)	254, 279, 471, 672, 693
MboI	GATC	5 cut(s)	252, 277, 469, 670, 691
MboII	GAAGA	7 cut(s)	127, 156, 165, 186, 332, 402, 479
MflI	RGATCY	3 cut(s)	252, 469, 691
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	6 cut(s)	75, 258, 476, 501, 570, 740
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	9 cut(s)	202, 205, 478, 745, 810, 822, 846, 862, 865
Mox20I	TGGCCA	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	529
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	2 cut(s)	206, 668
MspI	CCGG	2 cut(s)	328, 530
MspR9I	CCNGG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	197, 557, 817
NdeII	GATC	5 cut(s)	252, 277, 469, 670, 691
NlaIV	GGNNCC	3 cut(s)	109, 368, 637
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	407, 533, 662, 731
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	109, 368, 637
PspPI	GGNCC	2 cut(s)	108, 635
PspPPI	RGGWCCY	1 cut(s)	108
PsuI	RGATCY	3 cut(s)	252, 469, 691
PvuII	CAGCTG	2 cut(s)	206, 668
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	5 cut(s)	252, 277, 469, 670, 691
Sau96I	GGNCC	2 cut(s)	108, 635
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	5 cut(s)	52, 96, 201, 726, 787
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	482, 850
SmoI	CTYRAG	2 cut(s)	482, 850
Sse9I	AATT	6 cut(s)	75, 258, 476, 501, 570, 740
SsiI	CCGC	2 cut(s)	578, 841
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	2 cut(s)	370, 765
TaaI	ACNGT	5 cut(s)	53, 100, 304, 706, 836
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	744
TasI	AATT	6 cut(s)	75, 258, 476, 501, 570, 740
TfiI	GAWTC	4 cut(s)	407, 533, 662, 731
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	631, 754
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	127, 156
TspRI	CASTG	2 cut(s)	631, 754
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.