Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Forward (+)

21489355 .. 21494080

Gene Structure 4726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27920.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTGTGGCTGTGGCTATGGCTTCTTGCAGTCTTGGTCTTAGCTTGAATACTAGTAATTCTAGTTTGAAGAAACCCCTCGCAAACCCATTGCCAACTGGGGTTTTGGTGGAAGGCTCCCCTGTTTTTGGTTCTAAAAGCATCAGCATTGTTCAGAAGGGAAGACGGCCATCGTCATTGACTTCGATAATTGCACAAGCATCATCTGCTACAGCTGTGGAGGATGGTAAGCCGGATGAAAGTGACATGATTCCGGTTCCCAAAGTAATCATTGATCAGGATTCTGATCCAGATGCTACTGTGGTGGAGATAACCTTTGGAGATCGGCTTGGGGCTCTTCTTGATACTATGAGTGCGCTTAAGAACCTTGGCCTGAATGTTGTCAAGGCCAATGTGTTCTTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATTACTAGAGCAGACACTGGTAGGAAAGTAGATGATCCAGAGTTGCTTGAGGCTATTCGTTTGACAATTATAAATAATATGATAGAGTATCATCCGGAATCAAGTTCGCAGTTAGCAATGGGAACAGCATTTGGAATTGTGCCACCGCCACAACAGGTTGATGTGGATATAGCTACCCGTATACGCATTCATGATGACGGCCCCAACCGTAGTTTGCTTACCATGGAGACAGCTGATCGCCCTGGATTACTCGTGGATCTTGTAAAGATTATAACTGACATTAACATTGCTGTTGAATCAGGAGAGTTTGACACCGAGGGGTTGTTGGCCAAAGCAAAGTTTCACGTTAGCTACAGGGGTAAACCTATCATTAAGCCTCTCCAGCAGGTTCTTGCAAACAGCTTACGTTACTTCTTGAGGCGACCAGCGACTGAGGAGGCGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

31.41

Weight (kDa)

5.47

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	503, 704
Acc36I	ACCTGC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	613
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	3 cut(s)	281, 461, 696
AcoI	YGGCCR	2 cut(s)	167, 759
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	49, 70, 728
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	45, 215, 605, 665, 783, 834
AluI	AGCT	6 cut(s)	45, 215, 605, 665, 783, 834
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	281, 461, 696
AlwNI	CAGNNNCTG	2 cut(s)	449, 863
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	5 cut(s)	167, 370, 387, 631, 759
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	2 cut(s)	178, 218
BceAI	ACGGC	2 cut(s)	182, 646
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	653
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 63, 438
BfmI	CTRYAG	2 cut(s)	210, 784
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	3 cut(s)	118, 258, 634
BmrFI	CCNGG	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	150, 209, 283
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	500, 868
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	367, 654, 673, 747
BsaWI	WCCGGW	2 cut(s)	253, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	103, 454
Bse3DI	GCAATG	3 cut(s)	89, 555, 717
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	4 cut(s)	367, 654, 673, 747
BseGI	GGATG	3 cut(s)	229, 241, 523
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	3 cut(s)	89, 555, 717
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	2 cut(s)	103, 454
BseRI	GAGGAG	1 cut(s)	881
BshFI	GGCC	5 cut(s)	169, 372, 389, 633, 761
BsiSI	CCGG	3 cut(s)	233, 254, 527
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	5 cut(s)	169, 372, 389, 633, 761
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	5 cut(s)	169, 372, 389, 633, 761
BspCNI	CTCAG	1 cut(s)	856
BspEI	TCCGGA	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	118, 258, 634
BspMI	ACCTGC	1 cut(s)	808
BspPI	GGATC	3 cut(s)	281, 461, 696
BspQI	GCTCTTC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	3 cut(s)	89, 555, 717
BsrI	ACTGG	2 cut(s)	103, 454
BssECI	CCNNGG	4 cut(s)	367, 654, 673, 747
BssMI	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
BssNAI	GTATAC	1 cut(s)	614
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	367, 654
Bst1107I	GTATAC	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	301, 641
Bst6I	CTCTTC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	41, 864
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	3 cut(s)	229, 241, 523
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	6 cut(s)	277, 289, 325, 469, 670, 691
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 814
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	2 cut(s)	210, 784
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BstZ17I	GTATAC	1 cut(s)	614
BsuRI	GGCC	5 cut(s)	169, 372, 389, 633, 761
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	229, 241, 523
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	808
CaiI	CAGNNNCTG	2 cut(s)	449, 863
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	632
CviAII	CATG	3 cut(s)	247, 623, 655
DdeI	CTNAG	2 cut(s)	41, 864
DpnI	GATC	6 cut(s)	276, 288, 324, 468, 669, 690
DpnII	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
EaeI	YGGCCR	2 cut(s)	167, 759
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	367, 654
Eco24I	GRGCYC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	367, 654
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	367, 654
FaeI	CATG	3 cut(s)	250, 626, 658
FatI	CATG	3 cut(s)	246, 622, 654
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	613
FokI	GGATG	3 cut(s)	236, 248, 510
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	3 cut(s)	54, 63, 438
GlaI	GCGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	797
HaeIII	GGCC	5 cut(s)	169, 372, 389, 633, 761
HapII	CCGG	3 cut(s)	233, 254, 527
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	250, 626, 658
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	5 cut(s)	250, 281, 404, 530, 728
HpaII	CCGG	3 cut(s)	233, 254, 527
Hpy166II	GTNNAC	2 cut(s)	614, 794
Hpy188I	TCNGA	2 cut(s)	156, 286
Hpy188III	TCNNGA	9 cut(s)	278, 290, 341, 411, 470, 527, 623, 732, 847
Hpy8I	GTNNAC	2 cut(s)	614, 794
HpyAV	CCTTC	2 cut(s)	107, 151
HpyCH4III	ACNGT	2 cut(s)	301, 641
HpyCH4IV	ACGT	2 cut(s)	777, 838
HpyCH4V	TGCA	3 cut(s)	30, 194, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 814
HpyF3I	CTNAG	2 cut(s)	41, 864
HpySE526I	ACGT	2 cut(s)	777, 838
Hsp92II	CATG	3 cut(s)	250, 626, 658
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	122
LweI	GCATC	3 cut(s)	150, 209, 283
MaeI	CTAG	3 cut(s)	54, 63, 438
MaeII	ACGT	2 cut(s)	777, 838
MaeIII	GTNAC	2 cut(s)	242, 839
MalI	GATC	6 cut(s)	276, 288, 324, 468, 669, 690
MboI	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
MboII	GAAGA	4 cut(s)	82, 174, 329, 399
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	4 cut(s)	58, 189, 498, 567
MluNI	TGGCCA	1 cut(s)	761
MnlI	CCTC	8 cut(s)	89, 214, 475, 742, 819, 843, 859, 862
Mox20I	TGGCCA	1 cut(s)	761
MroI	TCCGGA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	3 cut(s)	360, 714, 804
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	215, 665
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	3 cut(s)	233, 254, 527
MspR9I	CCNGG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	206, 814
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
NlaIII	CATG	3 cut(s)	250, 626, 658
NlaIV	GGNNCC	3 cut(s)	118, 258, 634
NmuCI	GTSAC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	622
PciSI	GCTCTTC	1 cut(s)	342
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	5 cut(s)	250, 281, 404, 530, 728
PsiI	TTATAA	2 cut(s)	503, 704
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	118, 258, 634
PspPI	GGNCC	1 cut(s)	632
PstNI	CAGNNNCTG	2 cut(s)	449, 863
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	2 cut(s)	215, 665
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	360, 714, 804
Sau3AI	GATC	6 cut(s)	274, 286, 322, 466, 667, 688
Sau96I	GGNCC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	150, 209, 283
SfcI	CTRYAG	2 cut(s)	210, 784
SmlI	CTYRAG	3 cut(s)	359, 479, 847
SmoI	CTYRAG	3 cut(s)	359, 479, 847
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	4 cut(s)	58, 189, 498, 567
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	3 cut(s)	54, 63, 438
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	367, 654
TaaI	ACNGT	2 cut(s)	301, 641
TaiI	ACGT	2 cut(s)	780, 841
TaqI	TCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	58, 189, 498, 567
TfiI	GAWTC	5 cut(s)	250, 281, 404, 530, 728
Tru1I	TTAA	3 cut(s)	360, 714, 804
Tru9I	TTAA	3 cut(s)	360, 714, 804
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	252, 611
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	613
XspI	CTAG	3 cut(s)	54, 63, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.