Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Reverse (-)

27757128 .. 27760782

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1229500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAGTGGCTATGGCTTCTTGCAGTGTTGGGGTTAACTTGAACAGTAACTCCAGTTTGAAAAGATCCCTTGCAGTTCCAGCACCAACTGGGGCTATGGCAGAAGCCTCCTTTGGGTTTGCTCCTAAAAGCTTCTGCACTGTGCACAAGGGAAGATTAATATCTTCATCAACCTCAATTACTCCACGAGCAGCTGTGGAGGATGGTAAAACTGATGGAAGTCCAAGCGAAACTGACGCTGTTCCGATTCCTAAAGTTATTATTGACCAAGATTCTGATCCAGATGCAACGGTGGTGGAGATAACCTTTGGAGACCGGCTTGGAGCTCTTCTTGATACTATGAGTGCGCTTAGAAACCTCGGCCTGAATGTTGTCAAGGCCAATGTCTATTTGGATTCTTCTGGGAAGCATAACAAGTTTGCCGTCACTAGAGTCGATACTGGTAGGAAAGTAGAAGATCCAGAACTACTTGAGGCTATTCGATTGACAATTATAAATAATCTGATAGAGTATCATCCGGAATCAAGTTCCCAGTTAGCGATGGGAGCAGCATTTGGAATTGTGCCCCCACCAGAACAGGTTGATGTGGACATAGCAACCCACATAAGCGTCAACGACGATGGCCCCACCCGAAGTTTGCTTTACGTGGAGTCAGCAGATCGCCCTGGATTACTGGTGGATCTTGTAAAGATTATAATTGACGTTAATGTTGCTGTTGAATCGGGAGAATTCGACACAGAGGGGTTGTTGGCGAAGGCAAAATTTCATGTTAGCTACAGGGGTAAACCCCTCATCAAGTCTCTTCAGCAGGTTCTTGCTAACAGTTTACGATATTACTTGAGGCGACCGGCAACTGAGGAGGCGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

30.98

Weight (kDa)

5.2

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	494, 695
Acc36I	ACCTGC	1 cut(s)	799
AccIII	TCCGGA	1 cut(s)	517
AclWI	GGATC	4 cut(s)	60, 272, 452, 687
AcsI	RAATTY	2 cut(s)	728, 761
AcuI	CTGAAG	1 cut(s)	788
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	43, 61, 719
AjnI	CCWGG	1 cut(s)	664
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	4 cut(s)	132, 194, 326, 774
AluI	AGCT	4 cut(s)	132, 194, 326, 774
Alw21I	GWGCWC	2 cut(s)	147, 328
Alw26I	GTCTC	2 cut(s)	306, 804
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	4 cut(s)	60, 272, 452, 687
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	3 cut(s)	361, 378, 622
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	191, 548
ApoI	RAATTY	2 cut(s)	728, 761
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	623
BaeGI	GKGCMC	2 cut(s)	147, 567
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	147, 328
BbvI	GCAGC	2 cut(s)	203, 560
BccI	CCATC	4 cut(s)	197, 209, 535, 614
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	306, 804
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	775
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	2 cut(s)	192, 549
BlsI	GCNGC	2 cut(s)	193, 550
Bme1390I	CCNGG	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	666
BmrI	ACTGGG	2 cut(s)	99, 526
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	2 cut(s)	99, 526
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	491, 859
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	2 cut(s)	160, 276
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	358, 664
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	2 cut(s)	315, 847
Bse1I	ACTGG	5 cut(s)	54, 94, 445, 532, 678
Bse8I	GATNNNNATC	2 cut(s)	160, 276
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	358, 664
BseGI	GGATG	2 cut(s)	208, 514
BseJI	GATNNNNATC	2 cut(s)	160, 276
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	5 cut(s)	54, 94, 445, 532, 678
BseRI	GAGGAG	1 cut(s)	872
BseSI	GKGCMC	2 cut(s)	147, 567
BseXI	GCAGC	2 cut(s)	203, 560
BsgI	GTGCAG	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	848
BshFI	GGCC	3 cut(s)	363, 380, 624
BsiEI	CGRYCG	1 cut(s)	848
BsiHKAI	GWGCWC	2 cut(s)	147, 328
BsiSI	CCGG	3 cut(s)	316, 518, 848
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	306, 804
BsnI	GGCC	3 cut(s)	363, 380, 624
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	3 cut(s)	147, 328, 567
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	65, 277, 457, 658, 679
BspANI	GGCC	3 cut(s)	363, 380, 624
BspCNI	CTCAG	1 cut(s)	847
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	4 cut(s)	60, 272, 452, 687
BspQI	GCTCTTC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	306
BsrFI	RCCGGY	2 cut(s)	315, 847
BsrI	ACTGG	5 cut(s)	54, 94, 445, 532, 678
BssAI	RCCGGY	2 cut(s)	315, 847
BssECI	CCNNGG	2 cut(s)	358, 664
BssMI	GATC	5 cut(s)	65, 277, 457, 658, 679
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	47, 142, 292, 824
Bst6I	CTCTTC	2 cut(s)	333, 807
BstBAI	YACGTR	1 cut(s)	646
BstDEI	CTNAG	2 cut(s)	350, 855
BstF5I	GGATG	2 cut(s)	208, 514
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	5 cut(s)	68, 280, 460, 661, 682
BstMAI	GTCTC	2 cut(s)	306, 804
BstMBI	GATC	5 cut(s)	65, 277, 457, 658, 679
BstMCI	CGRYCG	1 cut(s)	848
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 545
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	2 cut(s)	147, 567
BstV1I	GCAGC	2 cut(s)	203, 560
BstX2I	RGATCY	3 cut(s)	65, 457, 679
BstYI	RGATCY	3 cut(s)	65, 457, 679
BsuRI	GGCC	3 cut(s)	363, 380, 624
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	208, 514
BtsI	GCAGTG	2 cut(s)	12, 31
BtsIMutI	CAGTG	3 cut(s)	12, 31, 138
BveI	ACCTGC	1 cut(s)	799
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	2 cut(s)	315, 847
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	2 cut(s)	245, 598
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	350, 855
DpnI	GATC	5 cut(s)	67, 279, 459, 660, 681
DpnII	GATC	5 cut(s)	65, 277, 457, 658, 679
Eam1104I	CTCTTC	2 cut(s)	333, 807
EarI	CTCTTC	2 cut(s)	333, 807
Ecl136II	GAGCTC	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	1 cut(s)	770
FaiI	YATR	9 cut(s)	14, 98, 341, 411, 494, 593, 605, 695, 768
FatI	CATG	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	192, 549
FokI	GGATG	2 cut(s)	215, 501
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	192, 549
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	2 cut(s)	192, 549
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	3 cut(s)	363, 380, 624
HapII	CCGG	3 cut(s)	316, 518, 848
HgaI	GACGC	2 cut(s)	245, 598
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	770
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	37, 613
HindII	GTYRAC	2 cut(s)	37, 613
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	7 cut(s)	247, 272, 395, 432, 521, 650, 719
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	3 cut(s)	316, 518, 848
Hpy166II	GTNNAC	6 cut(s)	37, 145, 589, 613, 785, 827
Hpy188I	TCNGA	3 cut(s)	246, 277, 504
Hpy188III	TCNNGA	5 cut(s)	281, 332, 461, 518, 723
Hpy8I	GTNNAC	6 cut(s)	37, 145, 589, 613, 785, 827
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	4 cut(s)	47, 142, 292, 824
HpyCH4IV	ACGT	2 cut(s)	645, 702
HpyCH4V	TGCA	5 cut(s)	24, 74, 138, 145, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 545
HpyF3I	CTNAG	2 cut(s)	350, 855
HpySE526I	ACGT	2 cut(s)	645, 702
Hsp92II	CATG	1 cut(s)	770
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	517
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	65, 277, 457, 658, 679
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	127, 323, 545
Lsp1109I	GCAGC	2 cut(s)	203, 560
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	645, 702
MaeIII	GTNAC	2 cut(s)	47, 424
MalI	GATC	5 cut(s)	67, 279, 459, 660, 681
MboI	GATC	5 cut(s)	65, 277, 457, 658, 679
MboII	GAAGA	6 cut(s)	156, 165, 320, 390, 467, 794
MflI	RGATCY	3 cut(s)	65, 457, 679
MhlI	GDGCHC	3 cut(s)	147, 328, 567
MluCI	AATT	6 cut(s)	177, 489, 558, 696, 728, 761
MlyI	GAGTC	2 cut(s)	441, 659
MroI	TCCGGA	1 cut(s)	517
MseI	TTAA	3 cut(s)	36, 158, 705
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	316, 518, 848
MspR9I	CCNGG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	80, 545
NdeII	GATC	5 cut(s)	65, 277, 457, 658, 679
NlaIII	CATG	1 cut(s)	770
NlaIV	GGNNCC	1 cut(s)	625
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	5 cut(s)	247, 272, 395, 521, 719
PkrI	GCNGC	2 cut(s)	193, 550
PleI	GAGTC	2 cut(s)	440, 658
PpsI	GAGTC	2 cut(s)	440, 658
Ppu21I	YACGTR	1 cut(s)	646
PshBI	ATTAAT	1 cut(s)	158
PsiI	TTATAA	2 cut(s)	494, 695
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	3 cut(s)	65, 457, 679
PvuII	CAGCTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	36, 158, 705
SatI	GCNGC	2 cut(s)	192, 549
Sau3AI	GATC	5 cut(s)	65, 277, 457, 658, 679
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	2 cut(s)	441, 659
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	3 cut(s)	147, 328, 567
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	775
SmlI	CTYRAG	2 cut(s)	470, 838
SmoI	CTYRAG	2 cut(s)	470, 838
Sse9I	AATT	6 cut(s)	177, 489, 558, 696, 728, 761
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	664
TaaI	ACNGT	4 cut(s)	47, 142, 292, 824
TaiI	ACGT	2 cut(s)	648, 705
TaqI	TCGA	3 cut(s)	435, 481, 732
TasI	AATT	6 cut(s)	177, 489, 558, 696, 728, 761
TfiI	GAWTC	5 cut(s)	247, 272, 395, 521, 719
Tru1I	TTAA	3 cut(s)	36, 158, 705
Tru9I	TTAA	3 cut(s)	36, 158, 705
TscAI	CASTG	3 cut(s)	12, 31, 145
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	191, 548
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	156, 755
TspRI	CASTG	3 cut(s)	12, 31, 145
VneI	GTGCAC	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	158
XapI	RAATTY	2 cut(s)	728, 761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.