Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008645

Physical Location & Seq

Genomic Coordinates Reverse (-)

38177851 .. 38181942

Gene Structure 4092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTGTGGCTATGGCTTCTTGCAGTCTTGGGCTTAGCTTGAATACTAGTAATTCTAGTTTGAAGAAACCACTTGTAAACCCATTACCAACTGGGGCTTTGCTGGAAGGCTCCCCTGTGTTTGGTTCTAAAAGCATCAGCATTGGTCAGAAGGGAAGATGGCTATCATCATCAGCTTCAATAATTGCACAAGCATCATCTGCTACAGCTGTGGAGGATGGTAAGCCAGATGAAAGTGACGTGATTCCAGTTCCCAAAGTTATCATTGACCAGGATTCTGATCCAGATGCAACTGTGGTGGAGATAACATTTGGAGATCGGCTCGGGGCTCTTCTTGATACTATGAGTGCGCTTAAGAACCTTGGCCTGAACGTTGTCAAGGCCAATGTGTTTCTGGATTCTTCTGGAAAGCACAACAAGTTTGCCATTACTAGAGCAGATACTGGTAGAAAAGTAGATGATCCAGAGTTGCTTGAGGCTATTCGTTTGACAATTATAAATAATCTGATAGAGTATCATCCGGAATCAAGTTCCCAACTAGCGATGGGAACAGCATTTGGAATTGTGCCACCACCACAACAGGTTGATGTGGATATAGCAACCCGTATACGCATTTATGACGACGGCCCCAACCGAAGTTTGCTTACTGTGGAGTCAGCTGATCGCCCTGGATTACTGGTGGATCTTGTAAAGATTATAACTGACATAAGCGTTGCTGTTGAGTCGGGAGAATTTGACACCGAGGGGATGTTGGCCAAAGCAAAGTTTCATGTTAGCTATAGGGGTAAACCTATCATCAAGCCTCTCCAGCAGGTTCTTTCAAACAGCTTGCGTTACTTCTTGAGGCGACCATCGACTGAGGAGTCAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

31.16

Weight (kDa)

5.21

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16880 AT1G16880
fragaria_vesca	FvH4_6g27920 FvH4_6g27920 FvH4_6g27920
malus_domestica	MD09G1231700.v1.1 MD17G1229500.v1.1
prunus_persica	Prupe.3G107700_v2.0.a1 Prupe.3G107700_v2.0.a1
pyrus_communis	pycom09g15090
rosa_chinensis	RchiOBHm_Chr2g0131481
rosa_laevigata	RLG00000019188
rosa_multiflora	Rmu_sc0002230.1_g000023 Rmu_sc0002808.1_g000013 Rmu_sc0002869.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112840
rosa_rugosa	Rorug02G0297100 Rorug02G0297200
rosa_samantha	Rh2AG350800 Rh2BG357200 Rh2CG336400 Rh2DG375100
rosa_wichuraiana	Rw2G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	497, 698
AasI	GACNNNNNNGTC	1 cut(s)	862
Acc36I	ACCTGC	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	607
AccIII	TCCGGA	1 cut(s)	520
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	3 cut(s)	275, 455, 690
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	4 cut(s)	43, 64, 180, 822
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	270, 667
AluBI	AGCT	6 cut(s)	39, 176, 209, 659, 777, 828
AluI	AGCT	6 cut(s)	39, 176, 209, 659, 777, 828
AlwI	GGATC	3 cut(s)	275, 455, 690
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	4 cut(s)	364, 381, 625, 753
ApoI	RAATTY	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BccI	CCATC	4 cut(s)	153, 212, 538, 859
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	272, 669
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	4 cut(s)	48, 57, 432, 539
BfmI	CTRYAG	2 cut(s)	204, 778
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	802
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	272, 669
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	112, 628
BmrFI	CCNGG	2 cut(s)	272, 669
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	144, 203, 277
BmuI	ACTGGG	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	791
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	494, 862
BsaBI	GATNNNNATC	2 cut(s)	163, 279
BsaJI	CCNNGG	3 cut(s)	361, 667, 741
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	4 cut(s)	97, 248, 448, 681
Bse8I	GATNNNNATC	2 cut(s)	163, 279
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	272, 669
BseDI	CCNNGG	3 cut(s)	361, 667, 741
BseGI	GGATG	3 cut(s)	223, 517, 753
BseJI	GATNNNNATC	2 cut(s)	163, 279
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	4 cut(s)	97, 248, 448, 681
BseRI	GAGGAG	1 cut(s)	875
BshFI	GGCC	4 cut(s)	366, 383, 627, 755
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	4 cut(s)	366, 383, 627, 755
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	280, 316, 460, 661, 682
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	366, 383, 627, 755
BspCNI	CTCAG	1 cut(s)	850
BspEI	TCCGGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	112, 628
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	3 cut(s)	275, 455, 690
BspQI	GCTCTTC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	97, 248, 448, 681
BssECI	CCNNGG	3 cut(s)	361, 667, 741
BssMI	GATC	5 cut(s)	280, 316, 460, 661, 682
BssNAI	GTATAC	1 cut(s)	608
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	608
Bst2UI	CCWGG	2 cut(s)	272, 669
Bst4CI	ACNGT	2 cut(s)	295, 649
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	2 cut(s)	35, 858
BstF5I	GGATG	3 cut(s)	223, 517, 753
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	5 cut(s)	283, 319, 463, 664, 685
BstMBI	GATC	5 cut(s)	280, 316, 460, 661, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 808
BstNI	CCWGG	2 cut(s)	272, 669
BstSCI	CCNGG	2 cut(s)	270, 667
BstSFI	CTRYAG	2 cut(s)	204, 778
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BstZ17I	GTATAC	1 cut(s)	608
BsuRI	GGCC	4 cut(s)	366, 383, 627, 755
BtgZI	GCGATG	1 cut(s)	557
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	223, 517, 753
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	770
DdeI	CTNAG	2 cut(s)	35, 858
DpnI	GATC	5 cut(s)	282, 318, 462, 663, 684
DpnII	GATC	5 cut(s)	280, 316, 460, 661, 682
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	270, 667
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	773
FatI	CATG	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	607
FokI	GGATG	3 cut(s)	230, 504, 760
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	4 cut(s)	48, 57, 432, 539
GlaI	GCGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	4 cut(s)	366, 383, 627, 755
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	1 cut(s)	773
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	7 cut(s)	244, 275, 398, 524, 653, 722, 863
HpaII	CCGG	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	79, 608, 788
Hpy188I	TCNGA	3 cut(s)	150, 280, 507
Hpy188III	TCNNGA	8 cut(s)	284, 335, 395, 405, 464, 521, 726, 841
Hpy8I	GTNNAC	3 cut(s)	79, 608, 788
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	2 cut(s)	101, 145
HpyCH4III	ACNGT	2 cut(s)	295, 649
HpyCH4IV	ACGT	2 cut(s)	240, 372
HpyCH4V	TGCA	3 cut(s)	24, 188, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 808
HpyF3I	CTNAG	2 cut(s)	35, 858
HpySE526I	ACGT	2 cut(s)	240, 372
Hsp92II	CATG	1 cut(s)	773
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	280, 316, 460, 661, 682
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	116
LweI	GCATC	3 cut(s)	144, 203, 277
MaeI	CTAG	4 cut(s)	48, 57, 432, 539
MaeII	ACGT	2 cut(s)	240, 372
MaeIII	GTNAC	2 cut(s)	236, 833
MalI	GATC	5 cut(s)	282, 318, 462, 663, 684
MboI	GATC	5 cut(s)	280, 316, 460, 661, 682
MboII	GAAGA	4 cut(s)	76, 168, 323, 393
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	755
MluCI	AATT	5 cut(s)	52, 183, 492, 561, 731
MluNI	TGGCCA	1 cut(s)	755
MlyI	GAGTC	3 cut(s)	662, 731, 872
MnlI	CCTC	6 cut(s)	208, 469, 736, 813, 837, 853
Mox20I	TGGCCA	1 cut(s)	755
MroI	TCCGGA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	755
MseI	TTAA	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	755
MspA1I	CMGCKG	2 cut(s)	209, 659
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	272, 669
MvaI	CCWGG	2 cut(s)	272, 669
MwoI	GCNNNNNNNGC	2 cut(s)	200, 808
NdeII	GATC	5 cut(s)	280, 316, 460, 661, 682
NlaIII	CATG	1 cut(s)	773
NlaIV	GGNNCC	2 cut(s)	112, 628
NmuCI	GTSAC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	244, 275, 398, 524
PleI	GAGTC	3 cut(s)	661, 730, 871
PpsI	GAGTC	3 cut(s)	661, 730, 871
PsiI	TTATAA	2 cut(s)	497, 698
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	270, 667
PspGI	CCWGG	2 cut(s)	270, 667
PspN4I	GGNNCC	2 cut(s)	112, 628
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	2 cut(s)	209, 659
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	280, 316, 460, 661, 682
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	3 cut(s)	662, 731, 872
ScrFI	CCNGG	2 cut(s)	272, 669
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	3 cut(s)	144, 203, 277
SfcI	CTRYAG	2 cut(s)	204, 778
SmlI	CTYRAG	3 cut(s)	353, 473, 841
SmoI	CTYRAG	3 cut(s)	353, 473, 841
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	5 cut(s)	52, 183, 492, 561, 731
SspMI	CTAG	4 cut(s)	48, 57, 432, 539
StyD4I	CCNGG	2 cut(s)	270, 667
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	295, 649
TaiI	ACGT	2 cut(s)	243, 375
TaqI	TCGA	1 cut(s)	854
TasI	AATT	5 cut(s)	52, 183, 492, 561, 731
TfiI	GAWTC	4 cut(s)	244, 275, 398, 524
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	246, 758
Vha464I	CTTAAG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	4 cut(s)	48, 57, 432, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.