AT1G17050

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010243
Physical Location & Seq
Forward (+)
5828915 .. 5831383
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17050.1

Sequence Viewer

Length: 1254 bp
ATGATGATGTCATGTCGGAATATAGACTTGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGTTTGGCAATTCTTCGAAGACCGTTTGTATGATTGGTGGCAGAAGCTGTGTTGGAAATTTGGTATTTCTCCGGCGAGATTTGGCTACTTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAATTCTCTGGTCAACGGTATTGGTCAAGATCAAACAGTGATGCTCAATCTGAGGCAAGAGTCACGAAAGCCAATATCTTTGGAAACTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCAGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAAACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAGGTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGATGTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCAAGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAGGTCGCAGAGCAAATGTATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACATAACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCGTTAAAGAATTTGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAATCTTGAAAGGATTGATTAG

Protein Analysis

417

Amino Acids

46.04

Weight (kDa)

5.44

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 123 - 368 1.9e-75 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca FvH4_3g17330 FvH4_3g17330
malus_domestica MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica Prupe.4G153300_v2.0.a1
pyrus_communis pycom03g20020 pycom11g24150
rosa_chinensis RchiOBHm_Chr5g0028851
rosa_laevigata RLG00000033119
rosa_multiflora Rmu_sc0005178.1_g000010
rosa_roxburghii Rroxscaffold_1G00051040
rosa_rugosa Rorug05G0110700
rosa_samantha Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana Rw5G018380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1006
AccII CGCG 2 cut(s) 1022, 1116
AciI CCGC 4 cut(s) 455, 528, 726, 1116
AclWI GGATC 2 cut(s) 1087, 1130
AcsI RAATTY 3 cut(s) 142, 205, 1174
AcuI CTGAAG 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 1007
AfaI GTAC 2 cut(s) 34, 659
AfeI AGCGCT 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 1196
AgsI TTSAA 8 cut(s) 69, 328, 683, 917, 1088, 1100, 1180, 1241
AjnI CCWGG 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 1087, 1130
AlwNI CAGNNNCTG 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 400
ApeKI GCWGC 4 cut(s) 380, 821, 839, 974
ApoI RAATTY 3 cut(s) 142, 205, 1174
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 1190
AspLEI GCGC 3 cut(s) 401, 1009, 1024
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 515, 718, 740
AsuII TTCGAA 1 cut(s) 101
AvrII CCTAGG 1 cut(s) 1190
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BanI GGYRCC 1 cut(s) 1006
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BauI CACGAG 2 cut(s) 444, 593
BbsI GAAGAC 2 cut(s) 110, 1178
BbvI GCAGC 4 cut(s) 367, 808, 851, 986
BceAI ACGGC 1 cut(s) 1020
BciT130I CCWGG 1 cut(s) 1077
BclI TGATCA 2 cut(s) 46, 708
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 3 cut(s) 986, 1025, 1191
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 2 cut(s) 402, 1010
BisI GCNGC 4 cut(s) 381, 822, 840, 975
BlnI CCTAGG 1 cut(s) 1190
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 382, 823, 841, 976
Bme1390I CCNGG 2 cut(s) 423, 1077
BmiI GGNNCC 1 cut(s) 1008
BmrFI CCNGG 2 cut(s) 423, 1077
BmsI GCATC 3 cut(s) 234, 659, 752
BpiI GAAGAC 2 cut(s) 110, 1178
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 3 cut(s) 630, 1119, 1235
BpuMI CCSGG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 198, 1037, 1190
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 1196
Bse1I ACTGG 1 cut(s) 1010
BseBI CCWGG 1 cut(s) 1077
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 198, 1037, 1190
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 1196
BseMII CTCAG 4 cut(s) 245, 375, 959, 1053
BseNI ACTGG 1 cut(s) 1010
BseXI GCAGC 4 cut(s) 367, 808, 851, 986
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 1022, 1116
BshNI GGYRCC 1 cut(s) 1006
BshVI ATCGAT 1 cut(s) 344
BsiSI CCGG 4 cut(s) 157, 188, 365, 422
BslI CCNNNNNNNGG 1 cut(s) 1196
BsmAI GTCTC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 101
Bsp143I GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 4 cut(s) 455, 528, 726, 1116
BspCNI CTCAG 4 cut(s) 246, 376, 958, 1054
BspDI ATCGAT 1 cut(s) 344
BspFNI CGCG 2 cut(s) 1022, 1116
BspLI GGNNCC 1 cut(s) 1008
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 2 cut(s) 1087, 1130
BspQI GCTCTTC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 1010
BssECI CCNNGG 3 cut(s) 198, 1037, 1190
BssMI GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
BssNI GRCGYC 1 cut(s) 1007
BssSI CACGAG 2 cut(s) 444, 593
BssT1I CCWWGG 3 cut(s) 198, 1037, 1190
Bst2BI CACGAG 2 cut(s) 444, 593
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 5 cut(s) 109, 221, 241, 484, 589
Bst6I CTCTTC 2 cut(s) 67, 568
BstACI GRCGYC 1 cut(s) 1007
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 5 cut(s) 466, 724, 741, 826, 972
BstDEI CTNAG 6 cut(s) 254, 384, 661, 945, 1043, 1062
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 2 cut(s) 1022, 1116
BstH2I RGCGCY 2 cut(s) 402, 1010
BstHHI GCGC 3 cut(s) 401, 1009, 1024
BstKTI GATC 9 cut(s) 49, 235, 510, 711, 1017, 1053, 1082, 1125, 1208
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
BstMWI GCNNNNNNNGC 6 cut(s) 188, 405, 461, 623, 1081, 1163
BstNI CCWGG 1 cut(s) 1077
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 2 cut(s) 421, 1075
BstSFI CTRYAG 1 cut(s) 972
BstUI CGCG 2 cut(s) 1022, 1116
BstV1I GCAGC 4 cut(s) 367, 808, 851, 986
BstV2I GAAGAC 2 cut(s) 110, 1178
Bsu15I ATCGAT 1 cut(s) 344
BsuTUI ATCGAT 1 cut(s) 344
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 3 cut(s) 246, 450, 1017
Cac8I GCNNGC 5 cut(s) 466, 724, 741, 826, 972
CaiI CAGNNNCTG 1 cut(s) 132
CfoI GCGC 3 cut(s) 401, 1009, 1024
ClaI ATCGAT 1 cut(s) 344
Csp6I GTAC 2 cut(s) 33, 658
CviAII CATG 4 cut(s) 12, 637, 654, 784
CviQI GTAC 2 cut(s) 33, 658
DdeI CTNAG 6 cut(s) 254, 384, 661, 945, 1043, 1062
DinI GGCGCC 1 cut(s) 1008
DpnI GATC 9 cut(s) 48, 234, 509, 710, 1016, 1052, 1081, 1124, 1207
DpnII GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
Eam1104I CTCTTC 2 cut(s) 67, 568
EarI CTCTTC 2 cut(s) 67, 568
Eco130I CCWWGG 3 cut(s) 198, 1037, 1190
Eco31I GGTCTC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 375
Eco47III AGCGCT 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 1075
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 3 cut(s) 198, 1037, 1190
EgeI GGCGCC 1 cut(s) 1008
EheI GGCGCC 1 cut(s) 1008
ErhI CCWWGG 3 cut(s) 198, 1037, 1190
FaeI CATG 4 cut(s) 15, 640, 657, 787
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FatI CATG 4 cut(s) 11, 636, 653, 783
FbaI TGATCA 2 cut(s) 46, 708
Fnu4HI GCNGC 4 cut(s) 381, 822, 840, 975
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 4 cut(s) 381, 822, 840, 975
FspBI CTAG 3 cut(s) 986, 1025, 1191
GlaI GCGC 3 cut(s) 400, 1008, 1023
GluI GCNGC 4 cut(s) 381, 822, 840, 975
GsaI CCCAGC 1 cut(s) 630
HaeII RGCGCY 2 cut(s) 402, 1010
HapII CCGG 4 cut(s) 157, 188, 365, 422
HhaI GCGC 3 cut(s) 401, 1009, 1024
Hin1I GRCGYC 1 cut(s) 1007
Hin1II CATG 4 cut(s) 15, 640, 657, 787
Hin6I GCGC 3 cut(s) 399, 1007, 1022
HinP1I GCGC 3 cut(s) 399, 1007, 1022
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 5 cut(s) 81, 263, 520, 898, 1058
HpaII CCGG 4 cut(s) 157, 188, 365, 422
HphI GGTGA 3 cut(s) 515, 718, 740
Hpy166II GTNNAC 3 cut(s) 217, 592, 951
Hpy188I TCNGA 5 cut(s) 18, 255, 605, 1063, 1205
Hpy8I GTNNAC 3 cut(s) 217, 592, 951
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 5 cut(s) 109, 221, 241, 484, 589
HpyCH4V TGCA 6 cut(s) 177, 319, 356, 722, 824, 974
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 405, 461, 623, 1081, 1163
HpyF3I CTNAG 6 cut(s) 254, 384, 661, 945, 1043, 1062
Hsp92I GRCGYC 1 cut(s) 1007
Hsp92II CATG 4 cut(s) 15, 640, 657, 787
HspAI GCGC 3 cut(s) 399, 1007, 1022
KasI GGCGCC 1 cut(s) 1006
Ksp22I TGATCA 2 cut(s) 46, 708
Kzo9I GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 4 cut(s) 367, 808, 851, 986
LweI GCATC 3 cut(s) 234, 659, 752
MaeI CTAG 3 cut(s) 986, 1025, 1191
MaeIII GTNAC 3 cut(s) 264, 794, 995
MalI GATC 9 cut(s) 48, 234, 509, 710, 1016, 1052, 1081, 1124, 1207
MboI GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
MluCI AATT 8 cut(s) 94, 142, 205, 458, 843, 1139, 1174, 1180
Mly113I GGCGCC 1 cut(s) 1007
MlyI GAGTC 2 cut(s) 272, 1067
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 6 cut(s) 249, 292, 315, 405, 569, 1210
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 4 cut(s) 470, 690, 1169, 1233
MslI CAYNNNNRTG 2 cut(s) 515, 546
MspI CCGG 4 cut(s) 157, 188, 365, 422
MspR9I CCNGG 2 cut(s) 423, 1077
MvaI CCWGG 1 cut(s) 1077
MvnI CGCG 2 cut(s) 1022, 1116
MwoI GCNNNNNNNGC 6 cut(s) 188, 405, 461, 623, 1081, 1163
NarI GGCGCC 1 cut(s) 1007
NciI CCSGG 1 cut(s) 423
NdeII GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
NlaIII CATG 4 cut(s) 15, 640, 657, 787
NlaIV GGNNCC 1 cut(s) 1008
NmuCI GTSAC 1 cut(s) 264
NspI RCATGY 1 cut(s) 787
NspV TTCGAA 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 81, 520, 898
PkrI GCNGC 4 cut(s) 382, 823, 841, 976
PleI GAGTC 2 cut(s) 271, 1066
PluTI GGCGCC 1 cut(s) 1010
PpsI GAGTC 2 cut(s) 271, 1066
Psp6I CCWGG 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 976
PstNI CAGNNNCTG 1 cut(s) 132
RsaI GTAC 2 cut(s) 34, 659
RsaNI GTAC 2 cut(s) 33, 658
RseI CAYNNNNRTG 2 cut(s) 515, 546
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 4 cut(s) 470, 690, 1169, 1233
SatI GCNGC 4 cut(s) 381, 822, 840, 975
Sau3AI GATC 9 cut(s) 46, 232, 507, 708, 1014, 1050, 1079, 1122, 1205
SchI GAGTC 2 cut(s) 272, 1067
ScrFI CCNGG 2 cut(s) 423, 1077
SfaNI GCATC 3 cut(s) 234, 659, 752
SfcI CTRYAG 1 cut(s) 972
SfoI GGCGCC 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 515, 546
SmlI CTYRAG 3 cut(s) 645, 1134, 1214
SmoI CTYRAG 3 cut(s) 645, 1134, 1214
Sse9I AATT 8 cut(s) 94, 142, 205, 458, 843, 1139, 1174, 1180
SsiI CCGC 4 cut(s) 455, 528, 726, 1116
SspDI GGCGCC 1 cut(s) 1006
SspMI CTAG 3 cut(s) 986, 1025, 1191
StyD4I CCNGG 2 cut(s) 421, 1075
StyI CCWWGG 3 cut(s) 198, 1037, 1190
TaaI ACNGT 5 cut(s) 109, 221, 241, 484, 589
TaqI TCGA 7 cut(s) 79, 101, 344, 672, 746, 756, 858
TasI AATT 8 cut(s) 94, 142, 205, 458, 843, 1139, 1174, 1180
TfiI GAWTC 3 cut(s) 81, 520, 898
Tru1I TTAA 4 cut(s) 470, 690, 1169, 1233
Tru9I TTAA 4 cut(s) 470, 690, 1169, 1233
TscAI CASTG 3 cut(s) 246, 457, 1017
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 4 cut(s) 380, 821, 839, 974
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 625, 801
TspRI CASTG 3 cut(s) 246, 457, 1017
XapI RAATTY 3 cut(s) 142, 205, 1174
XceI RCATGY 1 cut(s) 787
XmaJI CCTAGG 1 cut(s) 1190
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 3 cut(s) 986, 1025, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.