Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Forward (+)

33973854 .. 33977727

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1252200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGATGTCAATGACATGCCACACTCTTGATGGGAGAGCAGTGTTGGATTTTGTGGCTTGTGGGTGTTCTTCCAATGCTTTGTTGGATCGTTATTCGGTAAGGAATTACTCAAAGACAAACTCCAAGGGGAGTTGTCGAGGTTATGGAGCTCGGCTGAATCGAATTCGGTGTGGAGTTTCTTCAATGAAAACAGCTGAGACTCCAGCACCGAAAAAGGCAGCTGAGGCTCTGCTAAATGGTGTTCCTCAAGGTCTTCCACTTGTCTTGAATTTAACTAAAGAATCCAGAAAGCCGGTTTCGCTGACAAATTTGTTTGAAGTTGTTGCTAATGACCTCCTGACATTGAATCAAAATCTTCAGTCAATTGTTGGTGCAGAAAACCCCGTCTTAATGTCAGCTGCAGAGCAGATTTTTGGTGCTGGTGGGAAGAGGATGAGGCCTGCATTGGCGTTTCTAGTGTCCAGAGCAACAGCAGAACTAGTTGGGTTGAAGGAACTTACCAAAGAGCATCGGCGGTTGGCGGAGATAATTGAAATGATCCATACAGCTAGCTTAATACACGATGATGTATTGGATGAAAGTGACATGCGACGAGGGAAAGAAAGCGTTCATCAAATGTTTGGTACAAGAGTGGCAGTTCTTGCTGGGGACTTCATGTTTGCACAGTCGTCATGGTATCTTGCAAATCTAGAAAACCTTCAGGTCATCAAGCTCATCAGCCAGGTTATCAAAGATTTTGCAAGTGGTGAGATAAAGCAGGCATCTAACTTGTTTGATTGCGATGTCGAACTTGAGGAGTACTTGCTTAAAAGCTACTACAAAACAGCATCGTTAATTGCTGCAAGTACCAAAGGAGCTGCTATTTTTAGTGGGGTTGACAACTACGTAACGGAAAAAATGTACGATTATGGCAAGAATCTTGGTCTGTCCTTCCAAGTTGTTGATGACATATTGGATTTCACACAGTCCGCGGAGCAGCTGGGTAAGCCTGCTGGAACTGACCTCGCCAAAGGAAACCTGACAGCCCCTGTTATATTTGCTTTGAAGAAAGAACCAAAACTAAGAGATATAATCGATTCAGAATTCAGCGAGACTGGTTCTCTCGACGAAGCCATTGCATTGGTTAAGGCTTGTGGGGGGATTGAACAAGCACAAGAATTAGCGAAAGAGAAAGCTCATCTTGCAATCCAAAATCTCGAGTGTCTTCCCAAGACTGCTTTTCGATTGGCTCTGGAAGATATGGTGATGTTTAATCTTCAACGGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

424

Amino Acids

46.29

Weight (kDa)

5.83

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	128 - 374	2.8e-76	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	971
AciI	CCGC	4 cut(s)	514, 521, 969, 971
AclWI	GGATC	2 cut(s)	93, 532
AcsI	RAATTY	4 cut(s)	162, 268, 307, 1082
AcuI	CTGAAG	2 cut(s)	341, 683
AfaI	GTAC	4 cut(s)	625, 800, 847, 902
AgsI	TTSAA	9 cut(s)	183, 268, 317, 346, 490, 533, 1045, 1145, 1259
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	720
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	191, 1085
AlwI	GGATC	2 cut(s)	93, 532
AlwNI	CAGNNNCTG	1 cut(s)	1028
Ama87I	CYCGRG	1 cut(s)	1196
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	5 cut(s)	218, 398, 839, 857, 976
ApoI	RAATTY	4 cut(s)	162, 268, 307, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
Asp700I	GAANNNNTTC	2 cut(s)	606, 696
AsuHPI	GGTGA	2 cut(s)	758, 1255
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	1196
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	245, 1196
Bbv12I	GWGCWC	1 cut(s)	151
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	230, 385, 826, 844, 988
BccI	CCATC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	2 cut(s)	191, 1085
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	4 cut(s)	455, 479, 549, 689
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	5 cut(s)	219, 399, 840, 858, 977
BlsI	GCNGC	5 cut(s)	220, 400, 841, 859, 978
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	1196
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	3 cut(s)	517, 770, 836
BmtI	GCTAGC	1 cut(s)	552
BpiI	GAAGAC	2 cut(s)	245, 1196
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	231, 812
Bsa29I	ATCGAT	1 cut(s)	1074
BsaAI	YACGTR	1 cut(s)	886
BsaJI	CCNNGG	2 cut(s)	123, 969
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	1099
Bse3DI	GCAATG	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	1074
BseDI	CCNNGG	2 cut(s)	123, 969
BseGI	GGATG	2 cut(s)	438, 580
BseMI	GCAATG	1 cut(s)	1113
BseMII	CTCAG	2 cut(s)	186, 213
BseNI	ACTGG	1 cut(s)	1099
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	5 cut(s)	230, 385, 826, 844, 988
BseYI	CCCAGC	2 cut(s)	644, 979
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	971
BshFI	GGCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	1074
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	1196
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	662
BsmAI	GTCTC	2 cut(s)	191, 1085
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	1196
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	85, 537
BspACI	CCGC	4 cut(s)	514, 521, 969, 971
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	187, 214
BspDI	ATCGAT	1 cut(s)	1074
BspFNI	CGCG	1 cut(s)	971
BspMAI	CTGCAG	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	93, 532
BsrDI	GCAATG	1 cut(s)	1113
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	1099
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	123, 969
BssMI	GATC	2 cut(s)	85, 537
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	666, 966
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	4 cut(s)	441, 550, 759, 990
BstDEI	CTNAG	3 cut(s)	195, 222, 1061
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	2 cut(s)	438, 580
BstFNI	CGCG	1 cut(s)	971
BstKTI	GATC	2 cut(s)	88, 540
BstMAI	GTCTC	2 cut(s)	191, 1085
BstMBI	GATC	2 cut(s)	85, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	18, 589
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	399
BstSNI	TACGTA	1 cut(s)	886
BstUI	CGCG	1 cut(s)	971
BstV1I	GCAGC	5 cut(s)	230, 385, 826, 844, 988
BstV2I	GAAGAC	2 cut(s)	245, 1196
BstXI	CCANNNNNNTGG	1 cut(s)	1120
Bsu15I	ATCGAT	1 cut(s)	1074
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	1074
BtgI	CCRYGG	1 cut(s)	969
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	2 cut(s)	438, 580
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	441, 550, 759, 990
CaiI	CAGNNNCTG	1 cut(s)	1028
Cfr10I	RCCGGY	1 cut(s)	292
Cfr42I	CCGCGG	1 cut(s)	972
ClaI	ATCGAT	1 cut(s)	1074
Csp6I	GTAC	4 cut(s)	624, 799, 846, 901
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	4 cut(s)	15, 586, 655, 672
CviQI	GTAC	4 cut(s)	624, 799, 846, 901
DdeI	CTNAG	3 cut(s)	195, 222, 1061
DpnI	GATC	2 cut(s)	87, 539
DpnII	GATC	2 cut(s)	85, 537
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	149
Eco105I	TACGTA	1 cut(s)	886
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	341, 683
Eco88I	CYCGRG	1 cut(s)	1196
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	162, 1082
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	18, 589, 658, 675
FalI	AAGNNNNNCTT	2 cut(s)	1164, 1196
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	14, 585, 654, 671
Fnu4HI	GCNGC	5 cut(s)	219, 399, 840, 858, 977
FokI	GGATG	2 cut(s)	445, 587
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	5 cut(s)	219, 399, 840, 858, 977
FspBI	CTAG	4 cut(s)	455, 479, 549, 689
GluI	GCNGC	5 cut(s)	219, 399, 840, 858, 977
GsaI	CCCAGC	2 cut(s)	648, 983
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	4 cut(s)	18, 589, 658, 675
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	6 cut(s)	157, 199, 281, 346, 916, 1076
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	758, 1255
Hpy166II	GTNNAC	1 cut(s)	877
Hpy188I	TCNGA	1 cut(s)	1081
Hpy188III	TCNNGA	9 cut(s)	26, 265, 285, 337, 462, 689, 1103, 1196, 1232
Hpy8I	GTNNAC	1 cut(s)	877
Hpy99I	CGWCG	2 cut(s)	594, 1109
HpyAV	CCTTC	3 cut(s)	484, 707, 940
HpyCH4III	ACNGT	2 cut(s)	666, 966
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	9 cut(s)	374, 401, 443, 662, 683, 740, 842, 1118, 1184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
HpyF3I	CTNAG	3 cut(s)	195, 222, 1061
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	4 cut(s)	18, 589, 658, 675
KspI	CCGCGG	1 cut(s)	972
Kzo9I	GATC	2 cut(s)	85, 537
LmnI	GCTCC	3 cut(s)	146, 854, 973
Lsp1109I	GCAGC	5 cut(s)	230, 385, 826, 844, 988
LweI	GCATC	3 cut(s)	517, 770, 836
MaeI	CTAG	4 cut(s)	455, 479, 549, 689
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	581, 886
MalI	GATC	2 cut(s)	87, 539
MboI	GATC	2 cut(s)	85, 537
MboII	GAAGA	9 cut(s)	60, 171, 245, 347, 439, 1057, 1196, 1247, 1247
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	9 cut(s)	103, 162, 268, 307, 363, 528, 834, 1082, 1157
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	24, 63
MnlI	CCTC	9 cut(s)	131, 217, 255, 344, 423, 429, 587, 787, 1013
MroXI	GAANNNNTTC	2 cut(s)	606, 696
MseI	TTAA	7 cut(s)	272, 389, 554, 807, 833, 1125, 1251
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	5 cut(s)	194, 221, 398, 971, 979
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	971
MwoI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
NdeII	GATC	2 cut(s)	85, 537
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	4 cut(s)	18, 589, 658, 675
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	581
NspI	RCATGY	2 cut(s)	18, 589
PaeR7I	CTCGAG	1 cut(s)	1196
PceI	AGGCCT	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	606, 696
PfeI	GAWTC	5 cut(s)	157, 281, 346, 916, 1076
PkrI	GCNGC	5 cut(s)	220, 400, 841, 859, 978
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	2 cut(s)	644, 979
PspGI	CCWGG	1 cut(s)	720
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	1028
PvuII	CAGCTG	4 cut(s)	194, 221, 398, 979
RsaI	GTAC	4 cut(s)	625, 800, 847, 902
RsaNI	GTAC	4 cut(s)	624, 799, 846, 901
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	151
SacII	CCGCGG	1 cut(s)	972
SaqAI	TTAA	7 cut(s)	272, 389, 554, 807, 833, 1125, 1251
SatI	GCNGC	5 cut(s)	219, 399, 840, 858, 977
Sau3AI	GATC	2 cut(s)	85, 537
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	3 cut(s)	517, 770, 836
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	1196
Sfr303I	CCGCGG	1 cut(s)	972
SgrBI	CCGCGG	1 cut(s)	972
SlaI	CTCGAG	1 cut(s)	1196
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	246, 791, 1196
SmoI	CTYRAG	3 cut(s)	246, 791, 1196
SnaBI	TACGTA	1 cut(s)	886
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	9 cut(s)	103, 162, 268, 307, 363, 528, 834, 1082, 1157
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	4 cut(s)	514, 521, 969, 971
SspMI	CTAG	4 cut(s)	455, 479, 549, 689
SstI	GAGCTC	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	666, 966
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	7 cut(s)	136, 160, 786, 1074, 1104, 1197, 1222
TasI	AATT	9 cut(s)	103, 162, 268, 307, 363, 528, 834, 1082, 1157
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	5 cut(s)	157, 281, 346, 916, 1076
Tru1I	TTAA	7 cut(s)	272, 389, 554, 807, 833, 1125, 1251
Tru9I	TTAA	7 cut(s)	272, 389, 554, 807, 833, 1125, 1251
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	5 cut(s)	218, 398, 839, 857, 976
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	4 cut(s)	200, 591, 599, 643
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	4 cut(s)	162, 268, 307, 1082
XbaI	TCTAGA	1 cut(s)	688
XceI	RCATGY	2 cut(s)	18, 589
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 79
XhoI	CTCGAG	1 cut(s)	1196
XmnI	GAANNNNTTC	2 cut(s)	606, 696
XspI	CTAG	4 cut(s)	455, 479, 549, 689
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.