Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Reverse (-)

8786443 .. 8790675

Gene Structure 4233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G153300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATGTCAATGACATGCCATAGTCTTGAGGGTAGAGCTGTGTTGGATTTGGTGGCTTGTGGGTGTTCTTCCAATGCTTTGTTGGACCGTTCTTCAGTGAGGAATTACACAAAGGCAAGTTCTAAGGGCATTTGTAGAGGTTATGGAGCTCGGAAATTGGTTTGTGGTAGGCGGGACCGAATTCGGTGTGGAGTATCTTCAATGAAAACAGCTGAGACTCCAGTACCAAAGAAAACAGCTGAGACTCTGCTAAATAGTGTTTCTGGTGTTTCTCAAGGTTTTCCACAAGTTTTGGATTTAAACAAAGATTCAAGAAGGCCTGTTTCGTTGACAAATTTGTTTGAAGTGGTTGCTGATGACCTCCTGACATTAAATCAAAATCTTCAGTCAATTGTTGGCGCAGAAAACCCTGTCTTAATGTCCGCAGCCGAGCAGATCTTTGGTGCTGGTGGGAAGAGGATGAGACCAGCATTGGTGTTTCTAGTGTCCAGAGCAACATCAGAAATAGTTGGGTTGAAGGAACTTACCATGGAGCATCGTCGATTGGCAGAGATCATTGAAATGATCCATACTGCGAGCTTGATACATGATGATGTATTGGATGAAAGTGACATGCGACGAGGGAAGGAAACTGTTCATCAAATGTTTGGTACAAGAGTGGCGGTGCTGGCTGGGGACTTCATGTTTGCACAGTCATCATGGTATCTTGCAAATCTAGAAAACCTTCAGGTCATTAAGCTCATCAGTCAGGTTATCAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCCAGCTTGTTTGATTGTGATGTCGAACTGGAGGAGTACTTGATTAAGAGCTACTACAAAACAGCCTCTTTGATTGCTGCCAGTACCAAAGGAGCTGCCATTTTTAGTGGCGTTGATAGCTATATAGCAGAGAAAATGTATGACTATGGTAAGAATCTTGGTCTGTCCTTCCAAGTTGTTGATGACATATTGGATTTCACACAGTCCGCAGAGCAGCTCGGGAAGCCTGCTGGAACTGACCTCGCCAAAGGAAACCTGACAGCCCCAGTAATTTTTGCTCTAGAGAAAGAGCCAAAACTAAGAGATATAATTGAATCAGAATTCAGTGATACTGGTTCCCTTGACGAAGCCATTAGATTGGTTAAGGCATGTGGCGGCATTGAACAAGCACAAGTGTTAGCAAAAGAGAAAGCTCATCTTGCAATCCAAAATCTCGAGTGTCTCCCTAAGACTGCATTTCGATTAGCTCTGGAGGATATGGTAATGTTTAATCTTCAAAGGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

433

Amino Acids

47.34

Weight (kDa)

5.71

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	172, 423, 662, 996, 1164
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	3 cut(s)	180, 334, 1109
AcuI	CTGAAG	3 cut(s)	78, 368, 710
AfaI	GTAC	4 cut(s)	225, 652, 827, 874
AgsI	TTSAA	8 cut(s)	201, 312, 344, 517, 560, 1103, 1172, 1286
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	4 cut(s)	209, 236, 457, 1235
AlwI	GGATC	1 cut(s)	559
Ama87I	CYCGRG	2 cut(s)	1007, 1223
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	4 cut(s)	425, 866, 884, 1003
ApoI	RAATTY	3 cut(s)	180, 334, 1109
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
Asp700I	GAANNNNTTC	2 cut(s)	633, 723
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	85, 175
AsuHPI	GGTGA	1 cut(s)	785
AvaI	CYCGRG	2 cut(s)	1007, 1223
AvaII	GGWCC	2 cut(s)	85, 175
BaeI	ACNNNNGTAYC	4 cut(s)	207, 240, 642, 675
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	437, 853, 871, 1015
BcoDI	GTCTC	4 cut(s)	209, 236, 457, 1235
BfaI	CTAG	3 cut(s)	482, 716, 1070
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	5 cut(s)	426, 867, 885, 1004, 1165
BlsI	GCNGC	5 cut(s)	427, 868, 886, 1005, 1166
BmcAI	AGTACT	1 cut(s)	827
Bme18I	GGWCC	2 cut(s)	85, 175
BmeT110I	CYCGRG	2 cut(s)	1007, 1223
BmgT120I	GGNCC	2 cut(s)	85, 175
BmiI	GGNNCC	2 cut(s)	176, 1126
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	2 cut(s)	544, 797
BmuI	ACTGGG	1 cut(s)	1049
BpmI	CTGGAG	3 cut(s)	204, 839, 1280
BpuEI	CTTGAG	2 cut(s)	47, 258
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	528
Bse1I	ACTGG	5 cut(s)	221, 822, 870, 1055, 1126
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	3 cut(s)	465, 607, 788
BseMII	CTCAG	2 cut(s)	204, 231
BseNI	ACTGG	5 cut(s)	221, 822, 870, 1055, 1126
BseRI	GAGGAG	1 cut(s)	836
BseXI	GCAGC	4 cut(s)	437, 853, 871, 1015
BseYI	CCCAGC	1 cut(s)	671
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	2 cut(s)	1007, 1223
BslFI	GGGAC	2 cut(s)	188, 689
BsmAI	GTCTC	4 cut(s)	209, 236, 457, 1235
BsmFI	GGGAC	2 cut(s)	188, 689
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	457
BsoBI	CYCGRG	2 cut(s)	1007, 1223
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	435, 552, 564
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	5 cut(s)	172, 423, 662, 996, 1164
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	205, 232
BspLI	GGNNCC	2 cut(s)	176, 1126
BspPI	GGATC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	457
BsrI	ACTGG	5 cut(s)	221, 822, 870, 1055, 1126
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	3 cut(s)	435, 552, 564
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	89, 634, 693, 993
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	4 cut(s)	577, 669, 786, 1017
BstDEI	CTNAG	5 cut(s)	123, 213, 240, 1088, 1236
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	3 cut(s)	465, 607, 788
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	3 cut(s)	438, 555, 567
BstMAI	GTCTC	4 cut(s)	209, 236, 457, 1235
BstMBI	GATC	3 cut(s)	435, 552, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	668, 906, 1012, 1208
BstNSI	RCATGY	3 cut(s)	18, 616, 1161
BstV1I	GCAGC	4 cut(s)	437, 853, 871, 1015
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	1147
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	465, 607, 788
BtsIMutI	CAGTG	2 cut(s)	102, 1120
Cac8I	GCNNGC	4 cut(s)	577, 669, 786, 1017
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	85, 175
Csp6I	GTAC	4 cut(s)	224, 651, 826, 873
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	7 cut(s)	15, 529, 587, 613, 682, 699, 1158
CviQI	GTAC	4 cut(s)	224, 651, 826, 873
DdeI	CTNAG	5 cut(s)	123, 213, 240, 1088, 1236
DpnI	GATC	3 cut(s)	437, 554, 566
DpnII	GATC	3 cut(s)	435, 552, 564
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	85, 175
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	3 cut(s)	78, 368, 710
Eco88I	CYCGRG	2 cut(s)	1007, 1223
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	180, 1109
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	7 cut(s)	18, 532, 590, 616, 685, 702, 1161
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FaqI	GGGAC	2 cut(s)	188, 689
FatI	CATG	7 cut(s)	14, 528, 586, 612, 681, 698, 1157
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	426, 867, 885, 1004, 1165
FokI	GGATG	3 cut(s)	472, 614, 775
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	5 cut(s)	426, 867, 885, 1004, 1165
FspBI	CTAG	3 cut(s)	482, 716, 1070
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	5 cut(s)	426, 867, 885, 1004, 1165
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	3 cut(s)	204, 839, 1280
HaeIII	GGCC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	7 cut(s)	18, 532, 590, 616, 685, 702, 1161
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	5 cut(s)	217, 244, 308, 943, 1103
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	153, 502, 1108
Hpy188III	TCNNGA	9 cut(s)	26, 312, 364, 489, 716, 1009, 1070, 1223, 1259
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	2 cut(s)	543, 621
HpyAV	CCTTC	5 cut(s)	309, 511, 619, 734, 967
HpyCH4III	ACNGT	4 cut(s)	89, 634, 693, 993
HpyCH4V	TGCA	5 cut(s)	689, 710, 767, 1211, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	668, 906, 1012, 1208
HpyF3I	CTNAG	5 cut(s)	123, 213, 240, 1088, 1236
Hsp92II	CATG	7 cut(s)	18, 532, 590, 616, 685, 702, 1161
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	435, 552, 564
LmnI	GCTCC	3 cut(s)	146, 532, 881
Lsp1109I	GCAGC	4 cut(s)	437, 853, 871, 1015
LweI	GCATC	2 cut(s)	544, 797
MaeI	CTAG	3 cut(s)	482, 716, 1070
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	3 cut(s)	437, 554, 566
MboI	GATC	3 cut(s)	435, 552, 564
MboII	GAAGA	6 cut(s)	60, 84, 189, 374, 466, 1274
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	8 cut(s)	103, 155, 180, 334, 390, 1059, 1098, 1109
MlyI	GAGTC	2 cut(s)	211, 238
MmeI	TCCRAC	2 cut(s)	24, 63
MroXI	GAANNNNTTC	2 cut(s)	633, 723
MseI	TTAA	7 cut(s)	299, 371, 416, 735, 834, 1152, 1278
MslI	CAYNNNNRTG	2 cut(s)	560, 591
MspA1I	CMGCKG	2 cut(s)	212, 239
MunI	CAATTG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	668, 906, 1012, 1208
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	435, 552, 564
NlaIII	CATG	7 cut(s)	18, 532, 590, 616, 685, 702, 1161
NlaIV	GGNNCC	2 cut(s)	176, 1126
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	3 cut(s)	18, 616, 1161
PaeR7I	CTCGAG	1 cut(s)	1223
PceI	AGGCCT	1 cut(s)	319
PdmI	GAANNNNTTC	2 cut(s)	633, 723
PfeI	GAWTC	3 cut(s)	308, 943, 1103
PkrI	GCNGC	5 cut(s)	427, 868, 886, 1005, 1166
PleI	GAGTC	2 cut(s)	211, 238
PpsI	GAGTC	2 cut(s)	211, 238
Psp124BI	GAGCTC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	671
PspN4I	GGNNCC	2 cut(s)	176, 1126
PspPI	GGNCC	2 cut(s)	85, 175
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	2 cut(s)	212, 239
RsaI	GTAC	4 cut(s)	225, 652, 827, 874
RsaNI	GTAC	4 cut(s)	224, 651, 826, 873
RseI	CAYNNNNRTG	2 cut(s)	560, 591
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	7 cut(s)	299, 371, 416, 735, 834, 1152, 1278
SatI	GCNGC	5 cut(s)	426, 867, 885, 1004, 1165
Sau3AI	GATC	3 cut(s)	435, 552, 564
Sau96I	GGNCC	2 cut(s)	85, 175
ScaI	AGTACT	1 cut(s)	827
SchI	GAGTC	2 cut(s)	211, 238
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	544, 797
Sfr274I	CTCGAG	1 cut(s)	1223
SinI	GGWCC	2 cut(s)	85, 175
SlaI	CTCGAG	1 cut(s)	1223
SmiMI	CAYNNNNRTG	2 cut(s)	560, 591
SmlI	CTYRAG	3 cut(s)	26, 273, 1223
SmoI	CTYRAG	3 cut(s)	26, 273, 1223
Sse9I	AATT	8 cut(s)	103, 155, 180, 334, 390, 1059, 1098, 1109
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	5 cut(s)	172, 423, 662, 996, 1164
SspMI	CTAG	3 cut(s)	482, 716, 1070
SstI	GAGCTC	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	89, 634, 693, 993
TaqI	TCGA	4 cut(s)	541, 813, 1224, 1249
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	8 cut(s)	103, 155, 180, 334, 390, 1059, 1098, 1109
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	1 cut(s)	1167
TfiI	GAWTC	3 cut(s)	308, 943, 1103
Tru1I	TTAA	7 cut(s)	299, 371, 416, 735, 834, 1152, 1278
Tru9I	TTAA	7 cut(s)	299, 371, 416, 735, 834, 1152, 1278
TscAI	CASTG	2 cut(s)	102, 1120
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	425, 866, 884, 1003
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	218, 618, 626, 670
TspRI	CASTG	2 cut(s)	102, 1120
VpaK11BI	GGWCC	2 cut(s)	85, 175
XapI	RAATTY	3 cut(s)	180, 334, 1109
XbaI	TCTAGA	2 cut(s)	715, 1069
XceI	RCATGY	3 cut(s)	18, 616, 1161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	1223
XmnI	GAANNNNTTC	2 cut(s)	633, 723
XspI	CTAG	3 cut(s)	482, 716, 1070
ZrmI	AGTACT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.