Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Reverse (-)

29535060 .. 29537482

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGATGACGTCATGTCGGAATATAGATTTAGGTACGATGATGATGGCATGTGGTTGTGGCCGTCGTCAGTTTCCTTCATTAGCGAAGACTGTTTGTAAGTTTACTAGCAGCAATAGAAGCTATGGCGGTCTGGTGGGGAGTTGCAAAGCGGTGCCAACGAAATCAAAGGAGATCTCTTTGCTCAATGGTATTGGTCAATCTCAAACAGTGAGTTTTGATTTGAAACAAGAGTCAAAACAGCCTATTTCGTTGGTGACTCTGTTTGAGCTAGTAGCTGTTGATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGCGGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAATGAGACCGGGTTTGGTATTCCTTGTATCACATGCCACGGCGGAATTAGCAGGCCTAAAGGAACTAACAACAGAACACCGGCGTTTGGCTGAGATCATCGAGATGATACACACTGCAAGCTTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCATGAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAAGACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTCGACGAGTACTTACTCAAAAGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGAGCCTGATGTGACAGAACAAATGTACGAGTTTGGGAAGAATCTCGGTCTCTCTTTCCAGATAGTTGATGATATTTTGGATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAGAAAGCTGATGACGCTATAAAGAATCTACAGTGTCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTATAACCTCGAAAGAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

406

Amino Acids

44.47

Weight (kDa)

5.14

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	112 - 357	2.9e-75	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	151
AccI	GTMKAC	2 cut(s)	917, 1153
AciI	CCGC	9 cut(s)	126, 149, 323, 347, 422, 584, 693, 1043, 1070
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	1153
AcyI	GRCGYC	2 cut(s)	8, 710
AfaI	GTAC	4 cut(s)	34, 626, 749, 851
AfiI	CCNNNNNNNGG	2 cut(s)	466, 1163
AgsI	TTSAA	4 cut(s)	223, 295, 650, 1067
AhdI	GACNNNNNGTC	1 cut(s)	12
Alw21I	GWGCWC	2 cut(s)	797, 1102
Alw26I	GTCTC	2 cut(s)	379, 878
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	2 cut(s)	638, 929
AoxI	GGCC	2 cut(s)	58, 433
ApeKI	GCWGC	4 cut(s)	108, 788, 806, 925
Asp700I	GAANNNNTTC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	265, 685, 1084
AsuNHI	GCTAGC	1 cut(s)	589
AvaI	CYCGRG	2 cut(s)	638, 929
BanI	GGYRCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	797, 1102
BbvI	GCAGC	4 cut(s)	120, 775, 793, 937
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	45, 435
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	379, 878
BfaI	CTAG	5 cut(s)	105, 269, 590, 1113, 1181
BfmI	CTRYAG	2 cut(s)	284, 1145
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	5 cut(s)	109, 348, 789, 807, 926
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	5 cut(s)	110, 349, 790, 808, 927
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	1 cut(s)	390
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmeT110I	CYCGRG	2 cut(s)	638, 929
BmiI	GGNNCC	2 cut(s)	153, 1002
BmrFI	CCNGG	1 cut(s)	390
BmtI	GCTAGC	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	2 cut(s)	615, 1013
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	311
BsaHI	GRCGYC	2 cut(s)	8, 710
BsaI	GGTCTC	2 cut(s)	379, 878
BsaJI	CCNNGG	2 cut(s)	417, 1004
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 1163
Bse118I	RCCGGY	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	417, 1004
BseLI	CCNNNNNNNGG	2 cut(s)	466, 1163
BseMII	CTCAG	3 cut(s)	342, 462, 926
BseXI	GCAGC	4 cut(s)	120, 775, 793, 937
BshFI	GGCC	2 cut(s)	60, 435
BshNI	GGYRCC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	797, 1102
BsiHKCI	CYCGRG	2 cut(s)	638, 929
BsiSI	CCGG	3 cut(s)	332, 389, 460
BslI	CCNNNNNNNGG	2 cut(s)	466, 1163
BsmAI	GTCTC	2 cut(s)	379, 878
BsnI	GGCC	2 cut(s)	60, 435
Bso31I	GGTCTC	2 cut(s)	379, 878
BsoBI	CYCGRG	2 cut(s)	638, 929
Bsp1286I	GDGCHC	2 cut(s)	797, 1102
Bsp143I	GATC	5 cut(s)	171, 280, 474, 675, 1017
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	9 cut(s)	126, 149, 323, 347, 422, 584, 693, 1043, 1070
BspANI	GGCC	2 cut(s)	60, 435
BspCNI	CTCAG	3 cut(s)	343, 463, 925
BspDI	ATCGAT	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	153, 1002
BspMAI	CTGCAG	1 cut(s)	288
BspOI	GCTAGC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	2 cut(s)	379, 878
BsrFI	RCCGGY	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	417, 1004
BssMI	GATC	5 cut(s)	171, 280, 474, 675, 1017
BssNI	GRCGYC	2 cut(s)	8, 710
BssT1I	CCWWGG	1 cut(s)	1004
Bst4CI	ACNGT	4 cut(s)	91, 208, 556, 1149
Bst6I	CTCTTC	1 cut(s)	535
BstACI	GRCGYC	2 cut(s)	8, 710
BstC8I	GCNNGC	7 cut(s)	433, 499, 591, 691, 708, 793, 939
BstDEI	CTNAG	5 cut(s)	351, 471, 628, 912, 1010
BstDSI	CCRYGG	1 cut(s)	417
BstKTI	GATC	5 cut(s)	174, 283, 477, 678, 1020
BstMAI	GTCTC	2 cut(s)	379, 878
BstMBI	GATC	5 cut(s)	171, 280, 474, 675, 1017
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 428, 590, 934, 1067, 1130
BstNSI	RCATGY	3 cut(s)	51, 416, 538
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	284, 1145
BstV1I	GCAGC	4 cut(s)	120, 775, 793, 937
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	60, 435
BsuTUI	ATCGAT	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	213, 492, 1154
Cac8I	GCNNGC	7 cut(s)	433, 499, 591, 691, 708, 793, 939
CaiI	CAGNNNCTG	1 cut(s)	977
CciI	TCATGA	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	459
ClaI	ATCGAT	1 cut(s)	311
CseI	GACGC	3 cut(s)	606, 699, 1139
Csp6I	GTAC	4 cut(s)	33, 625, 748, 850
CviAII	CATG	7 cut(s)	12, 48, 413, 535, 560, 604, 621
CviQI	GTAC	4 cut(s)	33, 625, 748, 850
DdeI	CTNAG	5 cut(s)	351, 471, 628, 912, 1010
DpnI	GATC	5 cut(s)	173, 282, 476, 677, 1019
DpnII	GATC	5 cut(s)	171, 280, 474, 675, 1017
DriI	GACNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	535
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	535
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	1004
Eco147I	AGGCCT	1 cut(s)	435
Eco31I	GGTCTC	2 cut(s)	379, 878
Eco32I	GATATC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	1153
Eco88I	CYCGRG	2 cut(s)	638, 929
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	1004
ErhI	CCWWGG	1 cut(s)	1004
FaeI	CATG	7 cut(s)	15, 51, 416, 538, 563, 607, 624
FatI	CATG	7 cut(s)	11, 47, 412, 534, 559, 603, 620
FauI	CCCGC	1 cut(s)	1036
FbaI	TGATCA	1 cut(s)	675
FblI	GTMKAC	2 cut(s)	917, 1153
Fnu4HI	GCNGC	5 cut(s)	109, 348, 789, 807, 926
Fsp4HI	GCNGC	5 cut(s)	109, 348, 789, 807, 926
FspBI	CTAG	5 cut(s)	105, 269, 590, 1113, 1181
GluI	GCNGC	5 cut(s)	109, 348, 789, 807, 926
GsuI	CTGGAG	2 cut(s)	615, 1013
HaeIII	GGCC	2 cut(s)	60, 435
HapII	CCGG	3 cut(s)	332, 389, 460
HgaI	GACGC	3 cut(s)	606, 699, 1139
Hin1I	GRCGYC	2 cut(s)	8, 710
Hin1II	CATG	7 cut(s)	15, 51, 416, 538, 563, 607, 624
HincII	GTYRAC	1 cut(s)	918
HindII	GTYRAC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	6 cut(s)	230, 256, 643, 865, 1025, 1141
HpaII	CCGG	3 cut(s)	332, 389, 460
HphI	GGTGA	3 cut(s)	265, 685, 1084
Hpy166II	GTNNAC	3 cut(s)	102, 918, 1154
Hpy188I	TCNGA	3 cut(s)	18, 365, 1030
Hpy8I	GTNNAC	3 cut(s)	102, 918, 1154
Hpy99I	CGWCG	3 cut(s)	66, 515, 746
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	4 cut(s)	91, 208, 556, 1149
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	144, 286, 497, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 428, 590, 934, 1067, 1130
HpyF3I	CTNAG	5 cut(s)	351, 471, 628, 912, 1010
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	2 cut(s)	8, 710
Hsp92II	CATG	7 cut(s)	15, 51, 416, 538, 563, 607, 624
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	5 cut(s)	171, 280, 474, 675, 1017
LmnI	GCTCC	3 cut(s)	365, 803, 1000
Lsp1109I	GCAGC	4 cut(s)	120, 775, 793, 937
MaeI	CTAG	5 cut(s)	105, 269, 590, 1113, 1181
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	5 cut(s)	253, 530, 835, 962, 1072
MalI	GATC	5 cut(s)	173, 282, 476, 677, 1019
MboI	GATC	5 cut(s)	171, 280, 474, 675, 1017
MboII	GAAGA	5 cut(s)	97, 552, 874, 1067, 1196
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	797, 1102
MluCI	AATT	3 cut(s)	425, 1106, 1212
MlyI	GAGTC	3 cut(s)	239, 250, 1034
MnlI	CCTC	6 cut(s)	536, 787, 990, 1033, 1167, 1214
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	3 cut(s)	657, 968, 1092
MslI	CAYNNNNRTG	2 cut(s)	482, 513
MspI	CCGG	3 cut(s)	332, 389, 460
MspR9I	CCNGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	117, 428, 590, 934, 1067, 1130
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	171, 280, 474, 675, 1017
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	7 cut(s)	15, 51, 416, 538, 563, 607, 624
NlaIV	GGNNCC	2 cut(s)	153, 1002
NmuCI	GTSAC	4 cut(s)	253, 530, 835, 1072
NspI	RCATGY	3 cut(s)	51, 416, 538
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	643, 865, 1141
PkrI	GCNGC	5 cut(s)	110, 349, 790, 808, 927
PleI	GAGTC	3 cut(s)	238, 250, 1033
PpsI	GAGTC	3 cut(s)	238, 250, 1033
PspN4I	GGNNCC	2 cut(s)	153, 1002
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	4 cut(s)	34, 626, 749, 851
RsaNI	GTAC	4 cut(s)	33, 625, 748, 850
RseI	CAYNNNNRTG	2 cut(s)	482, 513
SalI	GTCGAC	1 cut(s)	916
SaqAI	TTAA	3 cut(s)	657, 968, 1092
SatI	GCNGC	5 cut(s)	109, 348, 789, 807, 926
Sau3AI	GATC	5 cut(s)	171, 280, 474, 675, 1017
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	3 cut(s)	239, 250, 1034
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	797, 1102
SfcI	CTRYAG	2 cut(s)	284, 1145
Sfr274I	CTCGAG	1 cut(s)	638
SgrAI	CRCCGGYG	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	638
SmiMI	CAYNNNNRTG	2 cut(s)	482, 513
SmlI	CTYRAG	2 cut(s)	612, 638
SmoI	CTYRAG	2 cut(s)	612, 638
Sse9I	AATT	3 cut(s)	425, 1106, 1212
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	9 cut(s)	126, 149, 323, 347, 422, 584, 693, 1043, 1070
SspMI	CTAG	5 cut(s)	105, 269, 590, 1113, 1181
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	1004
TaaI	ACNGT	4 cut(s)	91, 208, 556, 1149
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	7 cut(s)	311, 480, 639, 741, 917, 1159, 1206
TaqII	GACCGA	1 cut(s)	860
TasI	AATT	3 cut(s)	425, 1106, 1212
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	643, 865, 1141
Tru1I	TTAA	3 cut(s)	657, 968, 1092
Tru9I	TTAA	3 cut(s)	657, 968, 1092
TscAI	CASTG	3 cut(s)	213, 499, 1154
TseFI	GTSAC	4 cut(s)	253, 530, 835, 1072
TseI	GCWGC	4 cut(s)	108, 788, 806, 925
Tsp45I	GTSAC	4 cut(s)	253, 530, 835, 1072
TspDTI	ATGAA	3 cut(s)	66, 548, 592
TspRI	CASTG	3 cut(s)	213, 499, 1154
XbaI	TCTAGA	1 cut(s)	1180
XceI	RCATGY	3 cut(s)	51, 416, 538
XhoI	CTCGAG	1 cut(s)	638
XmiI	GTMKAC	2 cut(s)	917, 1153
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	5 cut(s)	105, 269, 590, 1113, 1181
ZraI	GACGTC	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.