Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Reverse (-)

22711942 .. 22716416

Gene Structure 4475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG204900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATATCAATGACATGCCGTAGTCTTGATTTTGGAAGAACTGTATTGGATTTGGTGGCTTGTGGTTGTTCTTCAAATGCTGTGTTGGACCGCTCTTCAATAAGGAATTACAGAAAGGTAAATACTAAGGGGAGTAGTAGAGGTTATGGAGCTAGGCAGGTAGTTTTTGGTGGGAGGGACCGAACTAGGTGCGGAGTTTCTTCAATGAATGCAGCTGAGACTCTGCTAAATGGTGTTCCTGAAGGCCTTCCAAGTGTCTTGGAGTTGAAGGAAGAGAAGAGAAGGCCCATTTCACTGACGAATTTGTTTGAAGTAGTAGCTGATGACCTCTTGACATTAAATCAAAATCTTCAGTCAATTGTTGGTGCAGAAAACCCGGTCTTAATGTCCGCAGCTGAGCAGATATTTGGCGCTGGTGGGAAGCGGATGAGACCAGCTTTGGTGTTTCTAGTCTCAAGAGCAACAGCAGAAATAGTTGGGTTGGAGGAACTTACAAAAGAACATCGACGATTGGCAGAGATTATTGAAATGATCCATACAGCAAGCTTGATACATGATGATGTATTGGATGAAAGTGACATGCGAAGAGGGAAGGAAACTGTTCATCAAATGTTTGGTACAAGAGTGGCTGTGCTAGCTGGGGACTTCATGTTTGCACAGTCATCATGGTATCTTGCAAATCTTGAAAATCTTCAGGTCATTAAGCTCATTAGCCAGGTTATCAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCTAGCTTGTTTGACTGTGATGTCAAACTGGACGAGTACTTAATCAAGAGCTACTACAAAACAGCCTCTTTAATTGCTGCCAGTACCAAAGGAGCTGCTATTTTTAGTGGGGTTGACAACAATGTAGCTGAGAAAATGTATAACTATGGCAAGAATCTTGGTCTGTCTTTCCAAGTTGTTGATGACATATTGGATTTTACACAATCAGCAGAGCAGCTGGGGAAGCCTGCTGGAACTGATCTGGCCAAAGGAAACCTTACTGCCCCGGTTATTTTTGCTCTGGAGAAAGAGCCAAAACTTAGAGATATGATTGAATCAGAATTCAGTGAAACCGGTTCACTTGACGAAGCCATTGATTTGGTTAAGGGTAGTGGCGGCATTGAACAAGCACAAGAATTAGCCAAAGAAAAAGCTCAGCTTGCAATCCAAAATCTCGAGTGCCTTCCTCGGACTGCATTTCGATTAGCTCTAGAGGATATGGTGATGTTTAATCTTGAACGGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

421

Amino Acids

46.21

Weight (kDa)

5.15

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	126 - 372	1.4e-77	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	5 cut(s)	91, 192, 390, 424, 1131
AclWI	GGATC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	999
AcsI	RAATTY	2 cut(s)	301, 1076
AcuI	CTGAAG	3 cut(s)	261, 335, 677
AfaI	GTAC	3 cut(s)	619, 794, 841
AgeI	ACCGGT	1 cut(s)	1088
AjnI	CCWGG	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	212, 424, 457
AlwI	GGATC	1 cut(s)	526
Ama87I	CYCGRG	1 cut(s)	1190
AoxI	GGCC	3 cut(s)	244, 284, 999
ApeKI	GCWGC	5 cut(s)	212, 392, 833, 851, 970
ApoI	RAATTY	2 cut(s)	301, 1076
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AsiGI	ACCGGT	1 cut(s)	1088
Asp700I	GAANNNNTTC	3 cut(s)	246, 600, 690
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	88, 178, 285
AsuC2I	CCSGG	2 cut(s)	377, 1022
AsuHPI	GGTGA	2 cut(s)	752, 1249
AsuNHI	GCTAGC	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	2 cut(s)	88, 178
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	1001
BbvI	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	1 cut(s)	716
BcnI	CCSGG	2 cut(s)	377, 1022
BcoDI	GTCTC	3 cut(s)	212, 424, 457
BfaI	CTAG	6 cut(s)	153, 186, 449, 635, 759, 1226
BfoI	RGCGCY	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
BlpI	GCTNAGC	2 cut(s)	396, 1170
BlsI	GCNGC	6 cut(s)	214, 394, 835, 853, 972, 1133
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	3 cut(s)	377, 716, 1022
Bme18I	GGWCC	2 cut(s)	88, 178
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	3 cut(s)	88, 178, 285
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	3 cut(s)	377, 716, 1022
BmsI	GCATC	1 cut(s)	764
BmtI	GCTAGC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	1058
Bpu1102I	GCTNAGC	2 cut(s)	396, 1170
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	377, 1022
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	1020, 1202
BsaWI	WCCGGW	1 cut(s)	1088
Bse118I	RCCGGY	1 cut(s)	1088
Bse1I	ACTGG	2 cut(s)	789, 837
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	1020, 1202
BseGI	GGATG	2 cut(s)	432, 574
BseMII	CTCAG	4 cut(s)	207, 387, 876, 1184
BseNI	ACTGG	2 cut(s)	789, 837
BseXI	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BseYI	CCCAGC	2 cut(s)	638, 973
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	246, 286, 1001
BshTI	ACCGGT	1 cut(s)	1088
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	3 cut(s)	377, 1022, 1089
BslFI	GGGAC	2 cut(s)	191, 656
BsmAI	GTCTC	3 cut(s)	212, 424, 457
BsmFI	GGGAC	2 cut(s)	191, 656
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	246, 286, 1001
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	1190
Bsp143I	GATC	2 cut(s)	531, 994
Bsp1720I	GCTNAGC	2 cut(s)	396, 1170
BspACI	CCGC	5 cut(s)	91, 192, 390, 424, 1131
BspANI	GGCC	3 cut(s)	246, 286, 1001
BspCNI	CTCAG	4 cut(s)	208, 388, 877, 1183
BspLI	GGNNCC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	1088
BsrI	ACTGG	2 cut(s)	789, 837
BssAI	RCCGGY	1 cut(s)	1088
BssECI	CCNNGG	2 cut(s)	1020, 1202
BssMI	GATC	2 cut(s)	531, 994
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	4 cut(s)	43, 601, 660, 773
Bst6I	CTCTTC	4 cut(s)	100, 267, 272, 580
BstC8I	GCNNGC	5 cut(s)	544, 636, 753, 984, 1176
BstDEI	CTNAG	6 cut(s)	126, 216, 396, 885, 1055, 1170
BstF5I	GGATG	2 cut(s)	432, 574
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	534, 997
BstMAI	GTCTC	3 cut(s)	212, 424, 457
BstMBI	GATC	2 cut(s)	531, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 979, 1175
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	2 cut(s)	18, 583
BstSCI	CCNGG	3 cut(s)	375, 714, 1020
BstV1I	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BsuRI	GGCC	3 cut(s)	246, 286, 1001
BtsCI	GGATG	2 cut(s)	432, 574
BtsIMutI	CAGTG	2 cut(s)	293, 1087
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	5 cut(s)	544, 636, 753, 984, 1176
CfoI	GCGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	1088
Cfr13I	GGNCC	3 cut(s)	88, 178, 285
Csp6I	GTAC	3 cut(s)	618, 793, 840
CspAI	ACCGGT	1 cut(s)	1088
CviAII	CATG	5 cut(s)	15, 554, 580, 649, 666
CviQI	GTAC	3 cut(s)	618, 793, 840
DdeI	CTNAG	6 cut(s)	126, 216, 396, 885, 1055, 1170
DpnI	GATC	2 cut(s)	533, 996
DpnII	GATC	2 cut(s)	531, 994
DrdI	GACNNNNNNGTC	1 cut(s)	776
DseDI	GACNNNNNNGTC	1 cut(s)	776
EaeI	YGGCCR	1 cut(s)	999
Eam1104I	CTCTTC	4 cut(s)	100, 267, 272, 580
EarI	CTCTTC	4 cut(s)	100, 267, 272, 580
Eco147I	AGGCCT	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	88, 178
Eco57I	CTGAAG	3 cut(s)	261, 335, 677
Eco88I	CYCGRG	1 cut(s)	1190
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	1 cut(s)	714
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	5 cut(s)	18, 557, 583, 652, 669
FalI	AAGNNNNNCTT	4 cut(s)	996, 1028, 1158, 1190
FaqI	GGGAC	2 cut(s)	191, 656
FatI	CATG	5 cut(s)	14, 553, 579, 648, 665
Fnu4HI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
FokI	GGATG	2 cut(s)	439, 581
Fsp4HI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
FspBI	CTAG	6 cut(s)	153, 186, 449, 635, 759, 1226
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
GsaI	CCCAGC	2 cut(s)	642, 977
GsuI	CTGGAG	1 cut(s)	1058
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	246, 286, 1001
HapII	CCGG	3 cut(s)	377, 1022, 1089
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	18, 557, 583, 652, 669
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	3 cut(s)	220, 910, 1070
HpaII	CCGG	3 cut(s)	377, 1022, 1089
HphI	GGTGA	2 cut(s)	752, 1249
Hpy166II	GTNNAC	2 cut(s)	871, 1094
Hpy188I	TCNGA	2 cut(s)	1075, 1206
Hpy8I	GTNNAC	2 cut(s)	871, 1094
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	6 cut(s)	236, 257, 262, 276, 586, 1208
HpyCH4III	ACNGT	4 cut(s)	43, 601, 660, 773
HpyCH4V	TGCA	7 cut(s)	212, 368, 656, 677, 734, 1178, 1211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 979, 1175
HpyF3I	CTNAG	6 cut(s)	126, 216, 396, 885, 1055, 1170
Hsp92II	CATG	5 cut(s)	18, 557, 583, 652, 669
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	531, 994
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	149, 848
Lsp1109I	GCAGC	5 cut(s)	224, 404, 820, 838, 982
LweI	GCATC	1 cut(s)	764
MaeI	CTAG	6 cut(s)	153, 186, 449, 635, 759, 1226
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	533, 996
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	2 cut(s)	531, 994
MboII	GAAGA	9 cut(s)	48, 63, 87, 192, 284, 289, 341, 597, 683
MfeI	CAATTG	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	1001
MluCI	AATT	6 cut(s)	106, 301, 357, 828, 1076, 1151
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	66, 462
MnlI	CCTC	8 cut(s)	134, 168, 338, 478, 581, 832, 1212, 1222
Mox20I	TGGCCA	1 cut(s)	1001
MroXI	GAANNNNTTC	3 cut(s)	246, 600, 690
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	7 cut(s)	338, 383, 702, 797, 827, 1119, 1245
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	1001
MspA1I	CMGCKG	3 cut(s)	215, 395, 973
MspI	CCGG	3 cut(s)	377, 1022, 1089
MspR9I	CCNGG	3 cut(s)	377, 716, 1022
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	635, 979, 1175
NciI	CCSGG	2 cut(s)	377, 1022
NdeII	GATC	2 cut(s)	531, 994
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	5 cut(s)	18, 557, 583, 652, 669
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	2 cut(s)	18, 583
PaeR7I	CTCGAG	1 cut(s)	1190
PceI	AGGCCT	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	100
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	3 cut(s)	246, 600, 690
PfeI	GAWTC	2 cut(s)	910, 1070
PinAI	ACCGGT	1 cut(s)	1088
PkrI	GCNGC	6 cut(s)	214, 394, 835, 853, 972, 1133
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	714
PspFI	CCCAGC	2 cut(s)	638, 973
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	88, 178, 285
PvuII	CAGCTG	3 cut(s)	215, 395, 973
RsaI	GTAC	3 cut(s)	619, 794, 841
RsaNI	GTAC	3 cut(s)	618, 793, 840
RseI	CAYNNNNRTG	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	7 cut(s)	338, 383, 702, 797, 827, 1119, 1245
SatI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
Sau3AI	GATC	2 cut(s)	531, 994
Sau96I	GGNCC	3 cut(s)	88, 178, 285
ScaI	AGTACT	1 cut(s)	794
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	377, 716, 1022
SfaNI	GCATC	1 cut(s)	764
Sfr274I	CTCGAG	1 cut(s)	1190
SinI	GGWCC	2 cut(s)	88, 178
SlaI	CTCGAG	1 cut(s)	1190
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	454, 1190
SmoI	CTYRAG	2 cut(s)	454, 1190
Sse9I	AATT	6 cut(s)	106, 301, 357, 828, 1076, 1151
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	5 cut(s)	91, 192, 390, 424, 1131
SspMI	CTAG	6 cut(s)	153, 186, 449, 635, 759, 1226
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	375, 714, 1020
TaaI	ACNGT	4 cut(s)	43, 601, 660, 773
TaqI	TCGA	3 cut(s)	505, 1191, 1216
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	106, 301, 357, 828, 1076, 1151
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	1 cut(s)	1134
TfiI	GAWTC	2 cut(s)	910, 1070
Tru1I	TTAA	7 cut(s)	338, 383, 702, 797, 827, 1119, 1245
Tru9I	TTAA	7 cut(s)	338, 383, 702, 797, 827, 1119, 1245
TscAI	CASTG	2 cut(s)	300, 1087
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	212, 392, 833, 851, 970
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	4 cut(s)	221, 585, 593, 637
TspRI	CASTG	2 cut(s)	300, 1087
VpaK11BI	GGWCC	2 cut(s)	88, 178
XapI	RAATTY	2 cut(s)	301, 1076
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	2 cut(s)	18, 583
XhoI	CTCGAG	1 cut(s)	1190
XmnI	GAANNNNTTC	3 cut(s)	246, 600, 690
XspI	CTAG	6 cut(s)	153, 186, 449, 635, 759, 1226
ZrmI	AGTACT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.