Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Reverse (-)

11033632 .. 11042486

Gene Structure 8855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATGTCAATGACATGCCGTAGTCTTGATTTTGGAAGAACTGTATTGGATTTGGTGGCTTGTGGTTGTTCTTCAAATGCTTTGTTGGACCGCTCTTCAATAAGGAGTTACGCAAAGGTAAATACCAAGGGGAGTAGTAGAGGTTATGGAGCTCGGCAGGAAGTTTTTGGTGGGAGGGACCGAACTAAGTGTGGAGTTGCATCAATGAAAGCAGCTGAGACTCTGCTAAATGGTGTTCCTGAACGTCTTCCAAGTGTCTTGGAGTTAAAGGAAGAGCCAAGAAGGCCCATTTCGCTGACGAATTTGTTTGAAGTGGTTGCTGATGACCTCTTGACATTAAATCAGAATCTTCAGTCAATTATTGGTGCAGAAAACCCAGTCTTAATGTCCGCAGCTGAGCAGATTTTTGGTGCTGGTGGGAAGCGGATGAGACCGGCTTTGGTGTTTCTAGTCTCAAGAGCAACAGCAGAAATAGTTGGGTTGGATGAACTTACAAAAGAACATCGACGATTGGCAGAGATTATTGAAATGATCCATACAGCAAGCTTAATTCATGATGATGTATTGGATGAAAGTGACATGCGGAGAGGGAAGGAAACTGTTCATCAAATGTTTGGTACAAGAGTGGCTGTGCTGGCTGGGGACTTCATGTTTGCACAGTCATCATGGTATCTTGCAAATCTTGAAAATCTTCCGGTCATTAAGCTCATTAGCCAGGTTATCAAAGATTTTGCTAGTGGTGAAATAAAGCAGGCATCTAGCTTGTTTGATTGTGATGTCAAACTTGACGAGTACTTGATCAAGAGCTACTACAAAACAGCCTCTTTAATCGCTGCCAGTACCAAAGGAGCTGCTATTTTTAGTGGAGTTGACGATAGTATAGCTGAGCAAATGTATGAGTACGGCAAGAATCTTGGCCTGTCATTCCAAGTTGTCGATGACATATTGGATTTTACTCAGTCGGCTGAGCAGCTGGGGAAGCCTGCTGGGACTGACTTGGCCAAAGGAAATCTTACAGCCCCGGTTATTTTCGCTCTGGAGAAAGAGCCAAAACTTAGAGATATAATTGAATCAGAATTCAGTGAAACCGGTTCACTTGATGAAGCCATTGAATTGGTTAAGAGTTCTGGCGGCATTGAACAAGCGCAAGAATTAGCCAAAGAAAAAGCTCATCTTGCAATCCAAAATCTCGAGTGCCTCCCTCGGACAGCATTTCGATTAGCTCTACAGGACATGGTGATGTTTAATCTTGAACGGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

422

Amino Acids

46.2

Weight (kDa)

5.04

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	126 - 372	2.8e-77	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	5 cut(s)	91, 390, 424, 583, 1131
AclWI	GGATC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	999
AcsI	RAATTY	2 cut(s)	301, 1076
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	4 cut(s)	619, 794, 841, 902
AgeI	ACCGGT	1 cut(s)	1088
AgsI	TTSAA	9 cut(s)	75, 99, 311, 527, 686, 1070, 1112, 1139, 1253
AjnI	CCWGG	1 cut(s)	714
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	212, 424, 457
AlwI	GGATC	1 cut(s)	526
Ama87I	CYCGRG	1 cut(s)	1190
AoxI	GGCC	3 cut(s)	284, 916, 999
ApeKI	GCWGC	5 cut(s)	212, 392, 833, 851, 970
ApoI	RAATTY	2 cut(s)	301, 1076
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AsiGI	ACCGGT	1 cut(s)	1088
Asp700I	GAANNNNTTC	3 cut(s)	246, 600, 690
AspLEI	GCGC	1 cut(s)	1147
AspS9I	GGNCC	3 cut(s)	88, 178, 285
AsuC2I	CCSGG	1 cut(s)	1022
AsuHPI	GGTGA	2 cut(s)	752, 1249
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	2 cut(s)	88, 178
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BceAI	ACGGC	2 cut(s)	3, 919
BciT130I	CCWGG	1 cut(s)	716
BclI	TGATCA	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	1022
BcoDI	GTCTC	3 cut(s)	212, 424, 457
BfaI	CTAG	3 cut(s)	449, 735, 759
BfmI	CTRYAG	1 cut(s)	1226
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
BlpI	GCTNAGC	3 cut(s)	396, 885, 966
BlsI	GCNGC	6 cut(s)	214, 394, 835, 853, 972, 1133
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	2 cut(s)	716, 1022
Bme18I	GGWCC	2 cut(s)	88, 178
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	3 cut(s)	88, 178, 285
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	716, 1022
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	209, 764
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	1058
Bpu1102I	GCTNAGC	3 cut(s)	396, 885, 966
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	1022
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	126, 1020, 1202
BsaWI	WCCGGW	2 cut(s)	694, 1088
Bse118I	RCCGGY	2 cut(s)	433, 1088
Bse1I	ACTGG	2 cut(s)	377, 837
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	126, 1020, 1202
BseGI	GGATG	3 cut(s)	432, 490, 574
BseMII	CTCAG	5 cut(s)	207, 387, 876, 957, 971
BseNI	ACTGG	2 cut(s)	377, 837
BseXI	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BseYI	CCCAGC	3 cut(s)	638, 973, 986
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	286, 918, 1001
BshTI	ACCGGT	1 cut(s)	1088
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	4 cut(s)	434, 695, 1022, 1089
BslFI	GGGAC	3 cut(s)	191, 656, 1003
BsmAI	GTCTC	3 cut(s)	212, 424, 457
BsmFI	GGGAC	3 cut(s)	191, 656, 1003
BsnI	GGCC	3 cut(s)	286, 918, 1001
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	1190
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	531, 798
Bsp1720I	GCTNAGC	3 cut(s)	396, 885, 966
BspACI	CCGC	5 cut(s)	91, 390, 424, 583, 1131
BspANI	GGCC	3 cut(s)	286, 918, 1001
BspCNI	CTCAG	5 cut(s)	208, 388, 877, 958, 970
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	2 cut(s)	100, 267
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	433, 1088
BsrI	ACTGG	2 cut(s)	377, 837
BssAI	RCCGGY	2 cut(s)	433, 1088
BssECI	CCNNGG	3 cut(s)	126, 1020, 1202
BssMI	GATC	2 cut(s)	531, 798
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	3 cut(s)	43, 601, 660
Bst6I	CTCTTC	2 cut(s)	100, 267
BstC8I	GCNNGC	4 cut(s)	544, 636, 753, 984
BstDEI	CTNAG	7 cut(s)	186, 216, 396, 885, 957, 966, 1055
BstF5I	GGATG	3 cut(s)	432, 490, 574
BstHHI	GCGC	1 cut(s)	1147
BstKTI	GATC	2 cut(s)	534, 801
BstMAI	GTCTC	3 cut(s)	212, 424, 457
BstMBI	GATC	2 cut(s)	531, 798
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 292, 635, 979, 1175
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	2 cut(s)	18, 583
BstSCI	CCNGG	2 cut(s)	714, 1020
BstSFI	CTRYAG	1 cut(s)	1226
BstV1I	GCAGC	5 cut(s)	224, 404, 820, 838, 982
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BsuRI	GGCC	3 cut(s)	286, 918, 1001
BtsCI	GGATG	3 cut(s)	432, 490, 574
BtsIMutI	CAGTG	1 cut(s)	1087
Cac8I	GCNNGC	4 cut(s)	544, 636, 753, 984
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	1147
Cfr10I	RCCGGY	2 cut(s)	433, 1088
Cfr13I	GGNCC	3 cut(s)	88, 178, 285
Csp6I	GTAC	4 cut(s)	618, 793, 840, 901
CspAI	ACCGGT	1 cut(s)	1088
CviAII	CATG	6 cut(s)	15, 554, 580, 649, 666, 1234
CviQI	GTAC	4 cut(s)	618, 793, 840, 901
DdeI	CTNAG	7 cut(s)	186, 216, 396, 885, 957, 966, 1055
DpnI	GATC	2 cut(s)	533, 800
DpnII	GATC	2 cut(s)	531, 798
EaeI	YGGCCR	1 cut(s)	999
Eam1104I	CTCTTC	2 cut(s)	100, 267
EarI	CTCTTC	2 cut(s)	100, 267
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	88, 178
Eco53kI	GAGCTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	1190
EcoICRI	GAGCTC	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	6 cut(s)	18, 557, 583, 652, 669, 1237
FalI	AAGNNNNNCTT	4 cut(s)	996, 1028, 1158, 1190
FaqI	GGGAC	3 cut(s)	191, 656, 1003
FatI	CATG	6 cut(s)	14, 553, 579, 648, 665, 1233
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
FokI	GGATG	3 cut(s)	439, 497, 581
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
FspBI	CTAG	3 cut(s)	449, 735, 759
GlaI	GCGC	1 cut(s)	1146
GluI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
GsaI	CCCAGC	3 cut(s)	642, 977, 990
GsuI	CTGGAG	1 cut(s)	1058
HaeIII	GGCC	3 cut(s)	286, 918, 1001
HapII	CCGG	4 cut(s)	434, 695, 1022, 1089
HhaI	GCGC	1 cut(s)	1147
Hin1II	CATG	6 cut(s)	18, 557, 583, 652, 669, 1237
Hin6I	GCGC	1 cut(s)	1145
HinP1I	GCGC	1 cut(s)	1145
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	4 cut(s)	220, 346, 910, 1070
HpaII	CCGG	4 cut(s)	434, 695, 1022, 1089
HphI	GGTGA	2 cut(s)	752, 1249
Hpy166II	GTNNAC	2 cut(s)	871, 1094
Hpy188I	TCNGA	3 cut(s)	345, 1075, 1206
Hpy8I	GTNNAC	2 cut(s)	871, 1094
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	276, 586
HpyCH4III	ACNGT	3 cut(s)	43, 601, 660
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	5 cut(s)	200, 368, 656, 677, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 292, 635, 979, 1175
HpyF3I	CTNAG	7 cut(s)	186, 216, 396, 885, 957, 966, 1055
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	6 cut(s)	18, 557, 583, 652, 669, 1237
HspAI	GCGC	1 cut(s)	1145
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	2 cut(s)	531, 798
LguI	GCTCTTC	2 cut(s)	100, 267
LmnI	GCTCC	2 cut(s)	149, 848
Lsp1109I	GCAGC	5 cut(s)	224, 404, 820, 838, 982
LweI	GCATC	2 cut(s)	209, 764
MaeI	CTAG	3 cut(s)	449, 735, 759
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	107, 575
MalI	GATC	2 cut(s)	533, 800
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	2 cut(s)	531, 798
MboII	GAAGA	7 cut(s)	48, 63, 87, 239, 284, 341, 683
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	1001
MluCI	AATT	7 cut(s)	301, 357, 549, 1065, 1076, 1112, 1151
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	66, 462
MnlI	CCTC	7 cut(s)	134, 168, 338, 581, 832, 1208, 1212
Mox20I	TGGCCA	1 cut(s)	1001
MroXI	GAANNNNTTC	3 cut(s)	246, 600, 690
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	8 cut(s)	266, 338, 383, 548, 702, 827, 1119, 1245
MslI	CAYNNNNRTG	2 cut(s)	558, 1238
Msp20I	TGGCCA	1 cut(s)	1001
MspA1I	CMGCKG	3 cut(s)	215, 395, 973
MspI	CCGG	4 cut(s)	434, 695, 1022, 1089
MspR9I	CCNGG	2 cut(s)	716, 1022
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	5 cut(s)	283, 292, 635, 979, 1175
NciI	CCSGG	1 cut(s)	1022
NdeII	GATC	2 cut(s)	531, 798
NlaIII	CATG	6 cut(s)	18, 557, 583, 652, 669, 1237
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	2 cut(s)	18, 583
PaeR7I	CTCGAG	1 cut(s)	1190
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	2 cut(s)	100, 267
PdmI	GAANNNNTTC	3 cut(s)	246, 600, 690
PfeI	GAWTC	3 cut(s)	346, 910, 1070
PinAI	ACCGGT	1 cut(s)	1088
PkrI	GCNGC	6 cut(s)	214, 394, 835, 853, 972, 1133
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	714
PspFI	CCCAGC	3 cut(s)	638, 973, 986
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	88, 178, 285
PvuII	CAGCTG	3 cut(s)	215, 395, 973
RsaI	GTAC	4 cut(s)	619, 794, 841, 902
RsaNI	GTAC	4 cut(s)	618, 793, 840, 901
RseI	CAYNNNNRTG	2 cut(s)	558, 1238
SacI	GAGCTC	1 cut(s)	154
SapI	GCTCTTC	2 cut(s)	100, 267
SaqAI	TTAA	8 cut(s)	266, 338, 383, 548, 702, 827, 1119, 1245
SatI	GCNGC	6 cut(s)	213, 393, 834, 852, 971, 1132
Sau3AI	GATC	2 cut(s)	531, 798
Sau96I	GGNCC	3 cut(s)	88, 178, 285
ScaI	AGTACT	1 cut(s)	794
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	716, 1022
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	209, 764
SfcI	CTRYAG	1 cut(s)	1226
Sfr274I	CTCGAG	1 cut(s)	1190
SinI	GGWCC	2 cut(s)	88, 178
SlaI	CTCGAG	1 cut(s)	1190
SmiMI	CAYNNNNRTG	2 cut(s)	558, 1238
SmlI	CTYRAG	2 cut(s)	454, 1190
SmoI	CTYRAG	2 cut(s)	454, 1190
Sse9I	AATT	7 cut(s)	301, 357, 549, 1065, 1076, 1112, 1151
SsiI	CCGC	5 cut(s)	91, 390, 424, 583, 1131
SspMI	CTAG	3 cut(s)	449, 735, 759
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	714, 1020
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	43, 601, 660
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	4 cut(s)	505, 936, 1191, 1216
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	7 cut(s)	301, 357, 549, 1065, 1076, 1112, 1151
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	1 cut(s)	1134
TfiI	GAWTC	3 cut(s)	346, 910, 1070
Tru1I	TTAA	8 cut(s)	266, 338, 383, 548, 702, 827, 1119, 1245
Tru9I	TTAA	8 cut(s)	266, 338, 383, 548, 702, 827, 1119, 1245
TscAI	CASTG	1 cut(s)	1087
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	212, 392, 833, 851, 970
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	7 cut(s)	221, 501, 542, 585, 593, 637, 1116
TspRI	CASTG	1 cut(s)	1087
VpaK11BI	GGWCC	2 cut(s)	88, 178
XapI	RAATTY	2 cut(s)	301, 1076
XceI	RCATGY	2 cut(s)	18, 583
XhoI	CTCGAG	1 cut(s)	1190
XmnI	GAANNNNTTC	3 cut(s)	246, 600, 690
XspI	CTAG	3 cut(s)	449, 735, 759
ZrmI	AGTACT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.