pycom03g20020

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
20590440 .. 20593524
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20020.5

Sequence Viewer

Length: 1272 bp
ATGATGTCAATGACATGCCACACTCTTGATGGGAGAGCAGTGTTGGATTTTGTGGCTTGTGGGTGTTCTTCCAATGCTTTGTTGGATCGTTATTCGGTAAGGAATTACTCAAAGGCAAACTCCAAGGGGAGTTGCAGAGGTTATGGAGCTCGGCTGAATCGAATTCGGTGTGGAGTTTCTTCAATGAAAACAGCTGAGACTCCAGTACCAAAAATGGCAGCTGAGGCTCTGCTAAATGGTGTTCCTCAAGGTCTTCCACAGGTCCTGAATTTAACTAAAGAATCCAGAAAGCCGGTTTCGCTGACAAATTTGTTTGAAGTTGTTGCCAATGACATCCTGACATTGAATCAAAATCTTCAGTCAATTGTTGGTGCAGAAAACCCCGTCTTAATGTCAGCTGCTGAGCAGATCTTTGGTGCCGGTGGGAAGAGGATGAGACCTGCATTGGCGTTTCTAGTGTCCAGAGCAACAGCAGAACTAGTTGGGTTGAAGGAACTTACCAAAGAGCATCGGCGGTTGGCGGAGATAATTGAAATGATCCATACAGCTAGCTTAATACACGATGATGTATTGGATGAAAGTGACATGCGACGAGGGAAAGAAAGCGTTCATCAAATGTTTGGTACAAGAGTGGCAGTTCTTGCTGGGGACTTCATGTTTGCACAGTCGTCATGGTATCTTGCAAATCTAGAAAACCTTCAGGTCATCAAGCTCATCAGCCAGGTTATCAAAGATTTTGCAAGCGGTGAGATAAAGCAGGCATCTAGCTTGTTTGATTGTGATGTCGAACTTGAGGAGTACTTGCTTAAAAGCTACTACAAAACAGCATCTTTAATTGCTGCAAGTACCAAAGGAGCTGCTATTTTTAGTGGGGTTGACAACTATGTAGCGGAAAAAATGTACGATTATGGCAAGAATCTTGGTCTGTCCTTCCAAGTTGTTGATGACATATTGGATTTCACACAGTCCGCGGAGCAGCTGGGTAAGCCTGCTGGAACTGATCTCGCCAAAGGAAACCTGACAGCCCCTGTTATATTTGCTTTGAAGAAAGAACCAAAACTAAGAGATATAATCGATTCAGAATTCAGCGAGACTGGTTCTCTCGACGAAGCCATTGCATTGGTTAAGGCTTGTGGGGGGATTGAACAAGCACAAGAATTAGCGAAAGAGAAAGCTCATCTTGCAATCCAAAATCTCGAGTGTCTTCCGAAGACTGCTTTTCGATTGGCGCTGGAAGATATGGTGATGTTTAATCTTCAACGGATTGATTAG

Protein Analysis

424

Amino Acids

46.25

Weight (kDa)

5.7

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010243)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 416
AccII CGCG 1 cut(s) 971
AciI CCGC 6 cut(s) 514, 521, 744, 890, 969, 971
AclWI GGATC 2 cut(s) 93, 532
AcsI RAATTY 4 cut(s) 162, 268, 307, 1082
AcuI CTGAAG 2 cut(s) 341, 683
AfaI GTAC 5 cut(s) 207, 625, 800, 847, 902
AgsI TTSAA 8 cut(s) 183, 317, 346, 490, 533, 1045, 1145, 1259
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 1 cut(s) 720
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 3 cut(s) 191, 430, 1085
AlwI GGATC 2 cut(s) 93, 532
AlwNI CAGNNNCTG 3 cut(s) 265, 401, 1028
Ama87I CYCGRG 1 cut(s) 1196
ApeKI GCWGC 5 cut(s) 218, 398, 839, 857, 976
ApoI RAATTY 4 cut(s) 162, 268, 307, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 2 cut(s) 606, 696
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 758, 1255
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 1196
AvaII GGWCC 1 cut(s) 262
BaeI ACNNNNGTAYC 4 cut(s) 189, 222, 615, 648
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 3 cut(s) 245, 1196, 1217
Bbv12I GWGCWC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 230, 385, 826, 844, 988
BccI CCATC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BciT130I CCWGG 1 cut(s) 722
BcoDI GTCTC 3 cut(s) 191, 430, 1085
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 5 cut(s) 455, 479, 549, 689, 765
BfoI RGCGCY 1 cut(s) 1232
BfuAI ACCTGC 1 cut(s) 448
BglII AGATCT 1 cut(s) 408
BisI GCNGC 5 cut(s) 219, 399, 840, 858, 977
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 5 cut(s) 220, 400, 841, 859, 978
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 1196
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 3 cut(s) 517, 770, 836
BmtI GCTAGC 1 cut(s) 552
BpiI GAAGAC 3 cut(s) 245, 1196, 1217
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 231, 812
Bsa29I ATCGAT 1 cut(s) 1074
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 123, 969
Bse118I RCCGGY 2 cut(s) 292, 419
Bse1I ACTGG 2 cut(s) 203, 1099
Bse3DI GCAATG 1 cut(s) 1113
BseBI CCWGG 1 cut(s) 722
BseCI ATCGAT 1 cut(s) 1074
BseDI CCNNGG 2 cut(s) 123, 969
BseGI GGATG 3 cut(s) 333, 438, 580
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 186, 213, 393
BseNI ACTGG 2 cut(s) 203, 1099
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 5 cut(s) 230, 385, 826, 844, 988
BseYI CCCAGC 2 cut(s) 644, 979
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 971
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 1 cut(s) 1074
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 1196
BsiSI CCGG 2 cut(s) 293, 420
BslFI GGGAC 1 cut(s) 662
BsmAI GTCTC 3 cut(s) 191, 430, 1085
BsmFI GGGAC 1 cut(s) 662
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 1196
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 4 cut(s) 85, 408, 537, 1000
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 6 cut(s) 514, 521, 744, 890, 969, 971
BspCNI CTCAG 3 cut(s) 187, 214, 394
BspDI ATCGAT 1 cut(s) 1074
BspFNI CGCG 1 cut(s) 971
BspLI GGNNCC 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 448
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 93, 532
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 2 cut(s) 292, 419
BsrI ACTGG 2 cut(s) 203, 1099
BssAI RCCGGY 2 cut(s) 292, 419
BssECI CCNNGG 2 cut(s) 123, 969
BssMI GATC 4 cut(s) 85, 408, 537, 1000
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 666, 966
Bst6I CTCTTC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 550, 742, 759, 990
BstDEI CTNAG 4 cut(s) 195, 222, 402, 1061
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 3 cut(s) 333, 438, 580
BstFNI CGCG 1 cut(s) 971
BstH2I RGCGCY 1 cut(s) 1232
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 4 cut(s) 88, 411, 540, 1003
BstMAI GTCTC 3 cut(s) 191, 430, 1085
BstMBI GATC 4 cut(s) 85, 408, 537, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 2 cut(s) 18, 589
BstSCI CCNGG 1 cut(s) 720
BstUI CGCG 1 cut(s) 971
BstV1I GCAGC 5 cut(s) 230, 385, 826, 844, 988
BstV2I GAAGAC 3 cut(s) 245, 1196, 1217
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 408
Bsu15I ATCGAT 1 cut(s) 1074
BsuTUI ATCGAT 1 cut(s) 1074
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 3 cut(s) 333, 438, 580
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 4 cut(s) 550, 742, 759, 990
CaiI CAGNNNCTG 3 cut(s) 265, 401, 1028
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 2 cut(s) 292, 419
Cfr13I GGNCC 1 cut(s) 262
Cfr42I CCGCGG 1 cut(s) 972
ClaI ATCGAT 1 cut(s) 1074
Csp6I GTAC 5 cut(s) 206, 624, 799, 846, 901
CviAII CATG 4 cut(s) 15, 586, 655, 672
CviQI GTAC 5 cut(s) 206, 624, 799, 846, 901
DdeI CTNAG 4 cut(s) 195, 222, 402, 1061
DpnI GATC 4 cut(s) 87, 410, 539, 1002
DpnII GATC 4 cut(s) 85, 408, 537, 1000
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 536
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 341, 683
Eco88I CYCGRG 1 cut(s) 1196
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 2 cut(s) 162, 1082
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 18, 589, 658, 675
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 14, 585, 654, 671
Fnu4HI GCNGC 5 cut(s) 219, 399, 840, 858, 977
FokI GGATG 3 cut(s) 320, 445, 587
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 5 cut(s) 219, 399, 840, 858, 977
FspBI CTAG 5 cut(s) 455, 479, 549, 689, 765
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 5 cut(s) 219, 399, 840, 858, 977
GsaI CCCAGC 2 cut(s) 648, 983
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 1232
HapII CCGG 2 cut(s) 293, 420
HhaI GCGC 1 cut(s) 1231
Hin1II CATG 4 cut(s) 18, 589, 658, 675
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HinfI GANTC 6 cut(s) 157, 199, 281, 346, 916, 1076
HpaII CCGG 2 cut(s) 293, 420
HphI GGTGA 2 cut(s) 758, 1255
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 2 cut(s) 1081, 1209
Hpy188III TCNNGA 8 cut(s) 26, 265, 285, 337, 462, 689, 1103, 1196
Hpy8I GTNNAC 1 cut(s) 877
Hpy99I CGWCG 2 cut(s) 594, 1109
HpyAV CCTTC 3 cut(s) 484, 707, 940
HpyCH4III ACNGT 2 cut(s) 666, 966
HpyCH4V TGCA 9 cut(s) 135, 374, 443, 662, 683, 740, 842, 1118, 1184
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
HpyF3I CTNAG 4 cut(s) 195, 222, 402, 1061
Hsp92II CATG 4 cut(s) 18, 589, 658, 675
HspAI GCGC 1 cut(s) 1229
KspI CCGCGG 1 cut(s) 972
Kzo9I GATC 4 cut(s) 85, 408, 537, 1000
LmnI GCTCC 3 cut(s) 146, 854, 973
Lsp1109I GCAGC 5 cut(s) 230, 385, 826, 844, 988
LweI GCATC 3 cut(s) 517, 770, 836
MaeI CTAG 5 cut(s) 455, 479, 549, 689, 765
MaeIII GTNAC 1 cut(s) 581
MalI GATC 4 cut(s) 87, 410, 539, 1002
MboI GATC 4 cut(s) 85, 408, 537, 1000
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 9 cut(s) 103, 162, 268, 307, 363, 528, 834, 1082, 1157
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 24, 63
MnlI CCTC 6 cut(s) 131, 217, 255, 423, 587, 787
MroXI GAANNNNTTC 2 cut(s) 606, 696
MseI TTAA 7 cut(s) 272, 389, 554, 807, 833, 1125, 1251
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 5 cut(s) 194, 221, 398, 971, 979
MspI CCGG 2 cut(s) 293, 420
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 971
MwoI GCNNNNNNNGC 5 cut(s) 224, 298, 641, 985, 1181
NdeII GATC 4 cut(s) 85, 408, 537, 1000
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 4 cut(s) 18, 589, 658, 675
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 581
NspI RCATGY 2 cut(s) 18, 589
PaeR7I CTCGAG 1 cut(s) 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdmI GAANNNNTTC 2 cut(s) 606, 696
PfeI GAWTC 5 cut(s) 157, 281, 346, 916, 1076
PkrI GCNGC 5 cut(s) 220, 400, 841, 859, 978
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 720
PspFI CCCAGC 2 cut(s) 644, 979
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PstNI CAGNNNCTG 3 cut(s) 265, 401, 1028
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 4 cut(s) 194, 221, 398, 979
RsaI GTAC 5 cut(s) 207, 625, 800, 847, 902
RsaNI GTAC 5 cut(s) 206, 624, 799, 846, 901
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 151
SacII CCGCGG 1 cut(s) 972
SaqAI TTAA 7 cut(s) 272, 389, 554, 807, 833, 1125, 1251
SatI GCNGC 5 cut(s) 219, 399, 840, 858, 977
Sau3AI GATC 4 cut(s) 85, 408, 537, 1000
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 3 cut(s) 517, 770, 836
Sfr274I CTCGAG 1 cut(s) 1196
Sfr303I CCGCGG 1 cut(s) 972
SgrBI CCGCGG 1 cut(s) 972
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 1196
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 3 cut(s) 246, 791, 1196
SmoI CTYRAG 3 cut(s) 246, 791, 1196
SpeI ACTAGT 1 cut(s) 478
Sse9I AATT 9 cut(s) 103, 162, 268, 307, 363, 528, 834, 1082, 1157
SsiI CCGC 6 cut(s) 514, 521, 744, 890, 969, 971
SspMI CTAG 5 cut(s) 455, 479, 549, 689, 765
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 666, 966
TaqI TCGA 6 cut(s) 160, 786, 1074, 1104, 1197, 1222
TasI AATT 9 cut(s) 103, 162, 268, 307, 363, 528, 834, 1082, 1157
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 5 cut(s) 157, 281, 346, 916, 1076
Tru1I TTAA 7 cut(s) 272, 389, 554, 807, 833, 1125, 1251
Tru9I TTAA 7 cut(s) 272, 389, 554, 807, 833, 1125, 1251
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 5 cut(s) 218, 398, 839, 857, 976
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 4 cut(s) 200, 591, 599, 643
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 4 cut(s) 162, 268, 307, 1082
XbaI TCTAGA 1 cut(s) 688
XceI RCATGY 2 cut(s) 18, 589
XcmI CCANNNNNNNNNTGG 2 cut(s) 26, 79
XhoI CTCGAG 1 cut(s) 1196
XmnI GAANNNNTTC 2 cut(s) 606, 696
XspI CTAG 5 cut(s) 455, 479, 549, 689, 765
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.