Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010243

Physical Location & Seq

Genomic Coordinates Forward (+)

27149109 .. 27152415

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24150.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGATGTCAATGACATGCCACACTCTTGATGGGAGAGCTGTGATGGATTTTGTGGCTTGTGGGTGTTCTTCCAATGCTTTGTTGGACCGCTATTCGGTGAGGAATTACTCGAAGGCAAATTCCAAGGGCAGTTGTAGAGGTTATGGAGCTCGGCTGAATCGAATTCGGTGTGGAGTTTCTTCAATGACAACAGCTGAGACTCCAGTACCAAAGAAGGCAGATAGTGCTCTGCTGAATGGTGTGCCTGAAGGTCTTCCACAGGTTTTAAATTTAAAGAAACAATCCAGAAAGCCGGTTTCGCTGACAAATTTGTTTGAAATTGTTGCTGATGACCTCCTCACATTAAATCAAAATCTTCAGTCAATTGTTGGTGCAGAAAACCCCGTCTTAATGTCAGCTGCCGAGCAGATCTTTGGTGCTGGTGGGAAGAGGATGAGACCTGCATTGGTGTTTCTAGTGTCTAGAGCAACAGCAGAACTAGTTGGATTGAAGGAACTTACCAAAGAGCATCGGCGATTGGCAGAGATCATCGAAATGATCCATACAGCAAGCTTGATACATGATGACGTTTTGGATGAAAGTGACATGCGACGAGGGAAGGAAACTGTTCATCAAATGTTCGGTACAAGAGTGGCAGTGCTTGCTGGGGACTTCATGTTTGCACAGTCGTCGTGGTATCTTGCAAATCTAGAAAACATTCAGGTCATCAAGCTCATCAGCCAGGTTATCAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCTAGCTTGTTTGATTGTGACGTCGAACTTGAGGAGTACTTGCTTAAGAGCTACTACAAAACAGCCTCCTTAATCGCTGCAAGTACCAAAGGAGCTGCCATTTTTAGTGGGGTTGACAACTATGTAATGGAGAAAATGTATGACTATGGCAAGAATCTCGGGCTGTCCTTCCAAGTTGTTGATGACATATTGGATTTCACACAGTCGGCGGAGCAGCTGGGGAAGCCTGCTGGAACTGACCTTGCCAAAGGAAACCTGACAGCCCCGGTTATATTTGCTTTGAAGAAAGAACCAAAACTAAGAGACATAATTGAATCAGAATTCAGCGAGACTGGTTCCCTCGACGAAGCCATTTCATTGGTTAAGGCTTGTGGGGGGATTGAACAAGCACAAGAATTAGCGAAAGAGAAAGCTCATCTTGCAATACAAAATCTCGAGTGTCTTCCCAAGACTGCTTTTCGATTAGCGCTGGAGGATATGGTGATGTTCAATCTTCAACGGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0016740 GO:0016765 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050347 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

424

Amino Acids

46.41

Weight (kDa)

5.7

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17050 AT1G36623 AT1G78510 AT1G78510
fragaria_vesca	FvH4_3g17330 FvH4_3g17330
malus_domestica	MD03G1252200.v1.1 MD11G1273800.v1.1
prunus_persica	Prupe.4G153300_v2.0.a1
pyrus_communis	pycom03g20020 pycom11g24150
rosa_chinensis	RchiOBHm_Chr5g0028851
rosa_laevigata	RLG00000033119
rosa_multiflora	Rmu_sc0005178.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051040
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203200 Rh5BG201200 Rh5CG222300 Rh5DG204900
rosa_wichuraiana	Rw5G018380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	2 cut(s)	88, 971
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	5 cut(s)	118, 162, 268, 307, 1082
AcuI	CTGAAG	2 cut(s)	267, 341
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	4 cut(s)	207, 625, 800, 847
AfeI	AGCGCT	1 cut(s)	1230
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	8 cut(s)	183, 317, 490, 1045, 1076, 1145, 1252, 1259
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	720
Alw21I	GWGCWC	2 cut(s)	151, 229
Alw26I	GTCTC	4 cut(s)	191, 430, 1059, 1085
AlwI	GGATC	1 cut(s)	532
Ama87I	CYCGRG	2 cut(s)	920, 1196
Aor51HI	AGCGCT	1 cut(s)	1230
ApeKI	GCWGC	4 cut(s)	398, 839, 857, 976
ApoI	RAATTY	5 cut(s)	118, 162, 268, 307, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
Asp700I	GAANNNNTTC	3 cut(s)	252, 606, 696
AspLEI	GCGC	1 cut(s)	1231
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	3 cut(s)	109, 758, 1255
AvaI	CYCGRG	2 cut(s)	920, 1196
AvaII	GGWCC	1 cut(s)	85
BaeI	ACNNNNGTAYC	4 cut(s)	189, 222, 615, 648
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	245, 1196
Bbv12I	GWGCWC	2 cut(s)	151, 229
BbvI	GCAGC	4 cut(s)	385, 826, 844, 988
BccI	CCATC	2 cut(s)	23, 37
BcgI	CGANNNNNNTGC	4 cut(s)	651, 685, 901, 935
BciT130I	CCWGG	1 cut(s)	722
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	4 cut(s)	191, 430, 1059, 1085
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	5 cut(s)	455, 462, 479, 689, 765
BfoI	RGCGCY	1 cut(s)	1232
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	399, 840, 858, 977
BlsI	GCNGC	4 cut(s)	400, 841, 859, 978
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	2 cut(s)	722, 1028
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	2 cut(s)	920, 1196
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	1099
BmrFI	CCNGG	2 cut(s)	722, 1028
BmsI	GCATC	2 cut(s)	517, 770
BpiI	GAAGAC	2 cut(s)	245, 1196
BpmI	CTGGAG	2 cut(s)	186, 1253
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	123, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	203, 1099
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	123, 1026
BseGI	GGATG	2 cut(s)	438, 580
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	203, 1099
BseRI	GAGGAG	2 cut(s)	326, 809
BseXI	GCAGC	4 cut(s)	385, 826, 844, 988
BseYI	CCCAGC	2 cut(s)	644, 979
BsgI	GTGCAG	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	151, 229
BsiHKCI	CYCGRG	2 cut(s)	920, 1196
BsiSI	CCGG	2 cut(s)	293, 1028
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	4 cut(s)	191, 430, 1059, 1085
BsmFI	GGGAC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	2 cut(s)	920, 1196
Bsp1286I	GDGCHC	2 cut(s)	151, 229
Bsp143I	GATC	3 cut(s)	408, 525, 537
BspACI	CCGC	2 cut(s)	88, 971
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	1099
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	203, 1099
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	123, 1026
BssMI	GATC	3 cut(s)	408, 525, 537
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	3 cut(s)	607, 666, 966
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	783
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	2 cut(s)	224, 641
BstC8I	GCNNGC	4 cut(s)	550, 642, 759, 990
BstDEI	CTNAG	2 cut(s)	195, 1061
BstF5I	GGATG	2 cut(s)	438, 580
BstH2I	RGCGCY	1 cut(s)	1232
BstHHI	GCGC	1 cut(s)	1231
BstKTI	GATC	3 cut(s)	411, 528, 540
BstMAI	GTCTC	4 cut(s)	191, 430, 1059, 1085
BstMBI	GATC	3 cut(s)	408, 525, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	18, 589
BstSCI	CCNGG	2 cut(s)	720, 1026
BstV1I	GCAGC	4 cut(s)	385, 826, 844, 988
BstV2I	GAAGAC	2 cut(s)	245, 1196
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	438, 580
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	4 cut(s)	550, 642, 759, 990
CfoI	GCGC	1 cut(s)	1231
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	4 cut(s)	206, 624, 799, 846
CviAII	CATG	4 cut(s)	15, 560, 586, 655
CviQI	GTAC	4 cut(s)	206, 624, 799, 846
DdeI	CTNAG	2 cut(s)	195, 1061
DpnI	GATC	3 cut(s)	410, 527, 539
DpnII	GATC	3 cut(s)	408, 525, 537
DraI	TTTAAA	2 cut(s)	267, 273
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	986
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	85
Eco47III	AGCGCT	1 cut(s)	1230
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	267, 341
Eco88I	CYCGRG	2 cut(s)	920, 1196
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	162, 1082
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	18, 563, 589, 658
FalI	AAGNNNNNCTT	2 cut(s)	1164, 1196
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	14, 559, 585, 654
Fnu4HI	GCNGC	4 cut(s)	399, 840, 858, 977
FokI	GGATG	2 cut(s)	445, 587
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	4 cut(s)	399, 840, 858, 977
FspBI	CTAG	5 cut(s)	455, 462, 479, 689, 765
GlaI	GCGC	1 cut(s)	1230
GluI	GCNGC	4 cut(s)	399, 840, 858, 977
GsaI	CCCAGC	2 cut(s)	648, 983
GsuI	CTGGAG	2 cut(s)	186, 1253
HaeII	RGCGCY	1 cut(s)	1232
HapII	CCGG	2 cut(s)	293, 1028
HhaI	GCGC	1 cut(s)	1231
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	4 cut(s)	18, 563, 589, 658
Hin6I	GCGC	1 cut(s)	1229
HinP1I	GCGC	1 cut(s)	1229
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	4 cut(s)	157, 199, 916, 1076
HpaII	CCGG	2 cut(s)	293, 1028
HphI	GGTGA	3 cut(s)	109, 758, 1255
Hpy166II	GTNNAC	1 cut(s)	877
Hpy188I	TCNGA	1 cut(s)	1081
Hpy188III	TCNNGA	5 cut(s)	26, 285, 462, 689, 1196
Hpy8I	GTNNAC	1 cut(s)	877
Hpy99I	CGWCG	4 cut(s)	594, 673, 788, 1109
HpyAV	CCTTC	6 cut(s)	106, 208, 242, 484, 592, 940
HpyCH4III	ACNGT	3 cut(s)	607, 666, 966
HpyCH4IV	ACGT	2 cut(s)	567, 783
HpyCH4V	TGCA	7 cut(s)	374, 443, 662, 683, 740, 842, 1184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
HpyF3I	CTNAG	2 cut(s)	195, 1061
HpySE526I	ACGT	2 cut(s)	567, 783
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	18, 563, 589, 658
HspAI	GCGC	1 cut(s)	1229
Kzo9I	GATC	3 cut(s)	408, 525, 537
LmnI	GCTCC	3 cut(s)	146, 854, 973
Lsp1109I	GCAGC	4 cut(s)	385, 826, 844, 988
LweI	GCATC	2 cut(s)	517, 770
MaeI	CTAG	5 cut(s)	455, 462, 479, 689, 765
MaeII	ACGT	2 cut(s)	567, 783
MaeIII	GTNAC	2 cut(s)	581, 779
MalI	GATC	3 cut(s)	410, 527, 539
MboI	GATC	3 cut(s)	408, 525, 537
MboII	GAAGA	8 cut(s)	60, 171, 245, 347, 439, 1057, 1196, 1247
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	151, 229
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	63, 463
MroXI	GAANNNNTTC	3 cut(s)	252, 606, 696
MseI	TTAA	7 cut(s)	266, 272, 344, 389, 807, 833, 1125
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	3 cut(s)	194, 398, 979
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	2 cut(s)	293, 1028
MspR9I	CCNGG	2 cut(s)	722, 1028
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	5 cut(s)	224, 298, 641, 985, 1181
NciI	CCSGG	1 cut(s)	1028
NdeII	GATC	3 cut(s)	408, 525, 537
NlaIII	CATG	4 cut(s)	18, 563, 589, 658
NlaIV	GGNNCC	1 cut(s)	1099
NmeAIII	GCCGAG	2 cut(s)	130, 427
NmuCI	GTSAC	2 cut(s)	581, 779
NspI	RCATGY	2 cut(s)	18, 589
PaeR7I	CTCGAG	1 cut(s)	1196
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	3 cut(s)	252, 606, 696
PfeI	GAWTC	3 cut(s)	157, 916, 1076
PkrI	GCNGC	4 cut(s)	400, 841, 859, 978
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	2 cut(s)	644, 979
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	1099
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	3 cut(s)	194, 398, 979
RsaI	GTAC	4 cut(s)	207, 625, 800, 847
RsaNI	GTAC	4 cut(s)	206, 624, 799, 846
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	7 cut(s)	266, 272, 344, 389, 807, 833, 1125
SatI	GCNGC	4 cut(s)	399, 840, 858, 977
Sau3AI	GATC	3 cut(s)	408, 525, 537
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	722, 1028
SduI	GDGCHC	2 cut(s)	151, 229
SfaNI	GCATC	2 cut(s)	517, 770
Sfr274I	CTCGAG	1 cut(s)	1196
SinI	GGWCC	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	1196
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	791, 806, 1196
SmoI	CTYRAG	3 cut(s)	791, 806, 1196
SpeI	ACTAGT	1 cut(s)	478
SsiI	CCGC	2 cut(s)	88, 971
SspMI	CTAG	5 cut(s)	455, 462, 479, 689, 765
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	720, 1026
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	607, 666, 966
TaiI	ACGT	2 cut(s)	570, 786
TaqI	TCGA	7 cut(s)	110, 160, 531, 786, 1104, 1197, 1222
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	3 cut(s)	157, 916, 1076
Tru1I	TTAA	7 cut(s)	266, 272, 344, 389, 807, 833, 1125
Tru9I	TTAA	7 cut(s)	266, 272, 344, 389, 807, 833, 1125
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	2 cut(s)	581, 779
TseI	GCWGC	4 cut(s)	398, 839, 857, 976
Tsp45I	GTSAC	2 cut(s)	581, 779
TspDTI	ATGAA	4 cut(s)	591, 599, 643, 1107
TspRI	CASTG	1 cut(s)	642
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	5 cut(s)	118, 162, 268, 307, 1082
XbaI	TCTAGA	2 cut(s)	461, 688
XceI	RCATGY	2 cut(s)	18, 589
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 79
XhoI	CTCGAG	1 cut(s)	1196
XmnI	GAANNNNTTC	3 cut(s)	252, 606, 696
XspI	CTAG	5 cut(s)	455, 462, 479, 689, 765
ZraI	GACGTC	1 cut(s)	784
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.