Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

5840269 .. 5841745

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTCACGGAGAAGAAGATAAAAGCAAAGGATTTGCTTCGGAAGAAGGTAACCAGCATCATCAATACGGTACCTTTCAAGGTGTTTCCAATTACCCTCCGCCGCAGAATTCTGCTCCGGTCACTGGGTTTCCTCAACCTTCTGCGCCACCTGGCGTTTACGATTCTGGAGCTCCTTATTACGCTCATGGATATCAAACTGTTCCAGTCCATGGTGGTGTTGCTGAAGGAAGACCTGTCAGACAACGTCGCCTTCCTTGCTGTGGAATTGGTCTTGGATGGTTCCTGTTCATTGTTGGATTTTTCCTTGGAGCAATCCCTTGGTATGTCGGATTGTTCATCATGATGTTTGGAAGGAGAATCGATTACAGGGAGAAACCAGGATACATTGCCTGCACTATCGCTGCTATTCTAGCAACAATCGCTGTGATTCTGGGTGTATCTAAAGGAGCAGACGACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.68

Weight (kDa)

6.95

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	2 cut(s)	101, 104
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	3 cut(s)	125, 212, 263
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	151, 379
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	153, 381
BciVI	GTATCC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	104, 405
BlsI	GCNGC	2 cut(s)	105, 406
Bme1390I	CCNGG	2 cut(s)	153, 381
BmiI	GGNNCC	2 cut(s)	73, 284
BmrFI	CCNGG	2 cut(s)	153, 381
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	211, 307, 320
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 212, 263
Bse1I	ACTGG	3 cut(s)	130, 206, 464
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	153, 381
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	211, 307, 320
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	3 cut(s)	125, 212, 263
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	130, 206, 464
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	125, 212, 263
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	101, 104
BspDI	ATCGAT	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	73, 284
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	130, 206, 464
BssECI	CCNNGG	3 cut(s)	211, 307, 320
BssT1I	CCWWGG	3 cut(s)	211, 307, 320
Bst2UI	CCWGG	2 cut(s)	153, 381
Bst4CI	ACNGT	2 cut(s)	71, 202
BstC8I	GCNNGC	1 cut(s)	394
BstDSI	CCRYGG	1 cut(s)	211
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 413, 422
BstNI	CCWGG	2 cut(s)	153, 381
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	151, 379
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	394
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	3 cut(s)	188, 212, 343
CviJI	RGCY	1 cut(s)	173
CviKI_1	RGCY	1 cut(s)	173
CviQI	GTAC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	3 cut(s)	211, 307, 320
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	151, 379
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	3 cut(s)	211, 307, 320
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	3 cut(s)	211, 307, 320
FaeI	CATG	3 cut(s)	191, 215, 346
FaiI	YATR	4 cut(s)	189, 213, 327, 344
FatI	CATG	3 cut(s)	187, 211, 342
Fnu4HI	GCNGC	2 cut(s)	104, 405
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	104, 405
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	104, 405
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	191, 215, 346
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	164, 360, 430
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	43, 242, 332
Hpy188III	TCNNGA	2 cut(s)	168, 343
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	5 cut(s)	41, 150, 221, 263, 348
HpyCH4III	ACNGT	2 cut(s)	71, 202
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 413, 422
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	191, 215, 346
HspAI	GCGC	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	75
LmnI	GCTCC	5 cut(s)	121, 170, 178, 311, 449
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	5, 50, 121
MboII	GAAGA	4 cut(s)	26, 29, 56, 243
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	91, 109, 267
MmeI	TCCRAC	2 cut(s)	277, 310
MnlI	CCTC	2 cut(s)	108, 144
MslI	CAYNNNNRTG	2 cut(s)	216, 344
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	153, 381
MvaI	CCWGG	2 cut(s)	153, 381
MwoI	GCNNNNNNNGC	3 cut(s)	258, 413, 422
NcoI	CCATGG	1 cut(s)	211
NlaIII	CATG	3 cut(s)	191, 215, 346
NlaIV	GGNNCC	2 cut(s)	73, 284
NmuCI	GTSAC	2 cut(s)	5, 121
PagI	TCATGA	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	164, 360, 430
PflFI	GACNNNGTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	105, 406
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	151, 379
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	151, 379
PspN4I	GGNNCC	2 cut(s)	73, 284
PsyI	GACNNNGTC	1 cut(s)	246
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	2 cut(s)	216, 344
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	104, 405
ScrFI	CCNGG	2 cut(s)	153, 381
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	8 cut(s)	52, 77, 85, 142, 154, 175, 238, 250
SfaNI	GCATC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	216, 344
Sse9I	AATT	3 cut(s)	91, 109, 267
SsiI	CCGC	2 cut(s)	101, 104
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	151, 379
StyI	CCWWGG	3 cut(s)	211, 307, 320
TaaI	ACNGT	2 cut(s)	71, 202
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	363
TasI	AATT	3 cut(s)	91, 109, 267
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	3 cut(s)	164, 360, 430
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	5, 121
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	2 cut(s)	5, 121
TspDTI	ATGAA	2 cut(s)	280, 328
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.