Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

19984542 .. 19986112

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCAAAGAAAAAGACAAAAACAGAGGAGCTTCTCCTTCATCTTACGGCACGTTTCAAGGTGTCCCTACTTATCCTCCACCGTCCTATCCTCATCCTCCGTCGCATCATCCAGTCATCGGAATTCCTCAGCCGTCTCCACCTCCCGGATCACCTCATCACGACATTTCCGTTCATCAATACATTCAAGAACATCAAACCGTTGCTGGTTACCCTGTTTCTCAAGGAAGACCTGCAAGACAAAACCGTCTTCCTTGTTGTGGTCTTGGCCTCGGTTGGTTCTTGTTCATCATTGGTTTCCTCCTTGGTGCAATTCCATGGTATGTAGGCGTATTCATTCTAGTATGTGCTAGGATCGATCCACGAGAGAAACCAGGATACGTAGCTTGTACCATTGCAGCTGTTGTTGCTACAATTACCATAGTTTTTGGTGTCATGGGAGGAAGAGGAGTTTGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.48

Weight (kDa)

9.21

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	241
AclWI	GGATC	3 cut(s)	157, 353, 362
AcsI	RAATTY	1 cut(s)	123
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	119, 146, 260
AgsI	TTSAA	2 cut(s)	59, 188
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	32, 386, 401
AluI	AGCT	3 cut(s)	32, 386, 401
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	157, 353, 362
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	144
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	235, 242
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	64, 118
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	341, 351
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	147, 375
BmrFI	CCNGG	2 cut(s)	147, 375
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	235, 242
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	271, 304, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 146, 260
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	271, 304, 317
BseGI	GGATG	2 cut(s)	94, 109
BseLI	CCNNNNNNNGG	3 cut(s)	119, 146, 260
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	42, 462
BseXI	GCAGC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	119, 146, 260
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	149, 354, 358
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	3 cut(s)	157, 353, 362
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	271, 304, 317
BssMI	GATC	3 cut(s)	149, 354, 358
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	304, 317
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	84, 202, 248
Bst6I	CTCTTC	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	317
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	94, 109
BstKTI	GATC	3 cut(s)	152, 357, 361
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	149, 354, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	375
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	145, 373
BstSNI	TACGTA	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	2 cut(s)	235, 242
Bsu15I	ATCGAT	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	94, 109
BveI	ACCTGC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	318, 436
CviJI	RGCY	5 cut(s)	32, 133, 270, 386, 401
CviKI_1	RGCY	5 cut(s)	32, 133, 270, 386, 401
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	151, 356, 360
DpnII	GATC	3 cut(s)	149, 354, 358
DrdI	GACNNNNNNGTC	1 cut(s)	246
DseDI	GACNNNNNNGTC	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco105I	TACGTA	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	304, 317
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	304, 317
ErhI	CCWWGG	2 cut(s)	304, 317
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	2 cut(s)	321, 439
FaiI	YATR	5 cut(s)	319, 324, 346, 422, 437
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	317, 435
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	81, 96
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	341, 351
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	2 cut(s)	321, 439
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	3 cut(s)	161, 188, 459
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	3 cut(s)	84, 202, 248
HpyCH4IV	ACGT	2 cut(s)	53, 381
HpyCH4V	TGCA	3 cut(s)	236, 311, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	53, 381
Hsp92II	CATG	2 cut(s)	321, 439
Kzo9I	GATC	3 cut(s)	149, 354, 358
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	126, 160, 192, 228, 246, 360, 387
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	341, 351
MaeII	ACGT	2 cut(s)	53, 381
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	151, 356, 360
MboI	GATC	3 cut(s)	149, 354, 358
MboII	GAAGA	3 cut(s)	240, 242, 456
MluCI	AATT	3 cut(s)	123, 312, 414
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	147, 375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	149, 354, 358
NlaIII	CATG	2 cut(s)	321, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	149, 354, 358
ScrFI	CCNGG	2 cut(s)	147, 375
SetI	ASST	9 cut(s)	34, 56, 64, 145, 157, 235, 384, 388, 403
SfaNI	GCATC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	382
Sse9I	AATT	3 cut(s)	123, 312, 414
SspMI	CTAG	2 cut(s)	341, 351
StyD4I	CCNGG	2 cut(s)	145, 373
StyI	CCWWGG	2 cut(s)	304, 317
TaaI	ACNGT	3 cut(s)	84, 202, 248
TaiI	ACGT	2 cut(s)	56, 384
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	123, 312, 414
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	4 cut(s)	30, 164, 277, 325
TspGWI	ACGGA	2 cut(s)	90, 160
XapI	RAATTY	1 cut(s)	123
XspI	CTAG	2 cut(s)	341, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.