Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006071.1

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 926

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 181 bp

gtttatcattggtttcttccttgctgctattccatggtatgttggggcgattatttttgtttgttccaggaataggatggactaccgagagaaaccaggatatatcgcttgctcagttgccgctattcttgctacaattgctattgtccttggtgccacaaagggaagtgatgactggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

59

Amino Acids

6.46

Weight (kDa)

8.01

Isoelectric Point (pI)

12.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	66, 95
ApeKI	GCWGC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	68, 97
BisI	GCNGC	2 cut(s)	25, 121
BlsI	GCNGC	2 cut(s)	26, 122
Bme1390I	CCNGG	2 cut(s)	68, 97
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	68, 97
BsaJI	CCNNGG	2 cut(s)	33, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	68, 97
BseDI	CCNNGG	2 cut(s)	33, 149
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	33, 149
BssT1I	CCWWGG	2 cut(s)	33, 149
Bst2UI	CCWGG	2 cut(s)	68, 97
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 138
BstNI	CCWGG	2 cut(s)	68, 97
BstSCI	CCNGG	2 cut(s)	66, 95
BstV1I	GCAGC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	33, 149
EcoRII	CCWGG	2 cut(s)	66, 95
EcoT14I	CCWWGG	2 cut(s)	33, 149
ErhI	CCWWGG	2 cut(s)	33, 149
FaeI	CATG	1 cut(s)	37
FaiI	YATR	3 cut(s)	35, 40, 103
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	25, 121
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	25, 121
GluI	GCNGC	2 cut(s)	25, 121
Hin1II	CATG	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 138
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	53, 80, 82, 109, 161
Lsp1109I	GCAGC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	8
MfeI	CAATTG	1 cut(s)	136
MluCI	AATT	1 cut(s)	136
MspR9I	CCNGG	2 cut(s)	68, 97
MunI	CAATTG	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	68, 97
MwoI	GCNNNNNNNGC	2 cut(s)	129, 138
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	26, 122
Psp6I	CCWGG	2 cut(s)	66, 95
PspGI	CCWGG	2 cut(s)	66, 95
PspN4I	GGNNCC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	25, 121
ScrFI	CCNGG	2 cut(s)	68, 97
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	66, 95
StyI	CCWWGG	2 cut(s)	33, 149
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.