Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Forward (+)

23534410 .. 23536752

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGCGGTGGCGAAGACGACAAGAAGAGAGGTATATCCACCAGTGGTCATCCTCCTCCTTCGGCTCCCGAGTATGGAACCTTCCAAGGCGTTGCCAACTATCCTCCTCCACCGCCGCCCGGCGGCTTCCCTCAGCCAGTTCCTCCGCCGGGAGCCACCGACCCACCACCTCCGTACCACCCTCCGGGCTATCAGACCGTTCCCGGTTATGCAGTTGCTGAGGGAAGACCTGTAAGACAGCGGCGCCTGCCTTGTTGTGGTTTGGGTCTCGGCTGGTGCCTGTTTATCATTGGTTTCTTCCTTGCTGCTATTCCATGGTATGTTGGGGCGATTATTTTTGTTTGTTCCAGGAATAGGATGGACTACCGAGAGAAACCAGGATATATCGCTTGCTCAGTTGCCGTGAGTAACTTCATTACCTTTATAATTTGTTACCTATCCTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.06

Weight (kDa)

8.56

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	243, 276
AciI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 241
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	7 cut(s)	74, 119, 122, 149, 184, 257, 354
AjnI	CCWGG	2 cut(s)	347, 376
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	4 cut(s)	120, 150, 186, 204
AvaI	CYCGRG	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	158, 191
BanI	GGYRCC	2 cut(s)	243, 276
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	21, 232
BbvCI	CCTCAGC	2 cut(s)	132, 219
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	2 cut(s)	349, 378
BcnI	CCSGG	4 cut(s)	120, 150, 186, 204
BcoDI	GTCTC	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	4 cut(s)	116, 124, 242, 306
BlsI	GCNGC	4 cut(s)	117, 125, 243, 307
Bme1390I	CCNGG	6 cut(s)	120, 150, 186, 204, 349, 378
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	5 cut(s)	66, 79, 154, 245, 278
BmrFI	CCNGG	6 cut(s)	120, 150, 186, 204, 349, 378
BpiI	GAAGAC	2 cut(s)	21, 232
Bpu10I	CCTNAGC	2 cut(s)	132, 219
BpuMI	CCSGG	4 cut(s)	120, 150, 186, 204
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	85, 314
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 119, 122, 149, 184, 257, 354
Bse1I	ACTGG	2 cut(s)	42, 137
BseBI	CCWGG	2 cut(s)	349, 378
BseDI	CCNNGG	2 cut(s)	85, 314
BseGI	GGATG	2 cut(s)	49, 363
BseLI	CCNNNNNNNGG	7 cut(s)	74, 119, 122, 149, 184, 257, 354
BseMII	CTCAG	3 cut(s)	146, 210, 408
BseNI	ACTGG	2 cut(s)	42, 137
BseRI	GAGGAG	2 cut(s)	45, 96
BseXI	GCAGC	1 cut(s)	292
BshNI	GGYRCC	2 cut(s)	243, 276
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	4 cut(s)	120, 149, 185, 204
BslI	CCNNNNNNNGG	7 cut(s)	74, 119, 122, 149, 184, 257, 354
BsmAI	GTCTC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 241
BspCNI	CTCAG	3 cut(s)	145, 211, 407
BspLI	GGNNCC	5 cut(s)	66, 79, 154, 245, 278
BspT107I	GGYRCC	2 cut(s)	243, 276
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	42, 137
BssECI	CCNNGG	2 cut(s)	85, 314
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	85, 314
Bst2UI	CCWGG	2 cut(s)	349, 378
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	248, 391
BstDEI	CTNAG	3 cut(s)	132, 219, 394
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	49, 363
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	2 cut(s)	349, 378
BstSCI	CCNGG	6 cut(s)	118, 148, 184, 202, 347, 376
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	2 cut(s)	21, 232
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	49, 363
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	248, 391
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	6 cut(s)	65, 126, 136, 155, 189, 273
CviKI_1	RGCY	6 cut(s)	65, 126, 136, 155, 189, 273
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	132, 219, 394
DinI	GGCGCC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	85, 314
Eco31I	GGTCTC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	347, 376
EcoT14I	CCWWGG	2 cut(s)	85, 314
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	85, 314
FaeI	CATG	1 cut(s)	318
FaiI	YATR	7 cut(s)	35, 75, 210, 316, 321, 384, 425
FatI	CATG	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	116, 124, 242, 306
FokI	GGATG	2 cut(s)	36, 370
Fsp4HI	GCNGC	4 cut(s)	116, 124, 242, 306
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	4 cut(s)	116, 124, 242, 306
HaeII	RGCGCY	1 cut(s)	247
HapII	CCGG	4 cut(s)	120, 149, 185, 204
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HpaII	CCGG	4 cut(s)	120, 149, 185, 204
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	69, 91
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	132, 219, 394
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	244
KasI	GGCGCC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	70, 152
Lsp1109I	GCAGC	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	407, 431
MboII	GAAGA	4 cut(s)	26, 37, 237, 289
MluCI	AATT	1 cut(s)	426
Mly113I	GGCGCC	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	4 cut(s)	120, 149, 185, 204
MspR9I	CCNGG	6 cut(s)	120, 150, 186, 204, 349, 378
MvaI	CCWGG	2 cut(s)	349, 378
MwoI	GCNNNNNNNGC	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	4 cut(s)	120, 150, 186, 204
NcoI	CCATGG	1 cut(s)	314
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	5 cut(s)	66, 79, 154, 245, 278
NmeAIII	GCCGAG	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	117, 125, 243, 307
PluTI	GGCGCC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	347, 376
PspGI	CCWGG	2 cut(s)	347, 376
PspN4I	GGNNCC	5 cut(s)	66, 79, 154, 245, 278
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	4 cut(s)	116, 124, 242, 306
ScrFI	CCNGG	6 cut(s)	120, 150, 186, 204, 349, 378
SetI	ASST	6 cut(s)	34, 83, 172, 232, 422, 438
SfoI	GGCGCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 241
SspDI	GGCGCC	1 cut(s)	243
StyD4I	CCNGG	6 cut(s)	118, 148, 184, 202, 347, 376
StyI	CCWWGG	2 cut(s)	85, 314
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	1 cut(s)	426
TauI	GCSGC	3 cut(s)	118, 126, 244
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	403, 433
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.