Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

20675872 .. 20682045

Gene Structure 6174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGCGAAGACGAAAAGGAGAGAGGAGTATCAAGTGATCATCATCATCACCATCCCCCTCCGCCACCCGAGTACGGAACTTTCCAAGGAGTAGCCAACTACCCACCACCGCCTCCGCCGACGGGATTCCCTCAGCCGGCGCCGCCGCCGGGAGCCGCTAACCCTTCAGCTTCTCATCCTGAAAGCTACCCTTATGGATATCAAACCGTTCCTGGTTATGCGGTTGCTGAAGGGCGACCTATAAGAGAGCGTCGCCTTCGTTGCTGTGGTTGTGGACTCGGCTGGTGCTTGTTTATCATCGGTTTCTTCCTTGGTACCATCCCCTGGTATGTTGGTGCAATTATCCTAATTTGTGCTAGGAATAGGATGGACCCCCGAGAGAAACCAGGATATATCGCTTGCGCAGTTGGTGCTATTGTTGCAACAATTGCTATTGTACTTGGTGCAACAAAGGGAGGTCATGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.71

Weight (kDa)

7.67

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	403
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	139, 314
AccB7I	CCANNNNNTGG	1 cut(s)	324
AciI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 221
AcuI	CTGAAG	2 cut(s)	150, 249
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	3 cut(s)	74, 316, 438
AfiI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 324
AjnI	CCWGG	3 cut(s)	211, 323, 385
AluBI	AGCT	2 cut(s)	170, 186
AluI	AGCT	2 cut(s)	170, 186
Ama87I	CYCGRG	2 cut(s)	68, 375
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	142, 404
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	2 cut(s)	68, 375
AvaII	GGWCC	1 cut(s)	370
BanI	GGYRCC	2 cut(s)	139, 314
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	132
BccI	CCATC	3 cut(s)	60, 326, 361
BciT130I	CCWGG	3 cut(s)	213, 325, 387
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	3 cut(s)	143, 146, 156
BlsI	GCNGC	3 cut(s)	144, 147, 157
Bme1390I	CCNGG	4 cut(s)	150, 213, 325, 387
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	2 cut(s)	68, 375
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	4 cut(s)	141, 154, 316, 372
BmrFI	CCNGG	4 cut(s)	150, 213, 325, 387
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	85, 310, 323
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 324
Bse118I	RCCGGY	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	3 cut(s)	213, 325, 387
BseDI	CCNNGG	3 cut(s)	85, 310, 323
BseGI	GGATG	4 cut(s)	52, 175, 318, 372
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 324
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	39
BshNI	GGYRCC	2 cut(s)	139, 314
BsiHKCI	CYCGRG	2 cut(s)	68, 375
BsiSI	CCGG	2 cut(s)	137, 149
BslI	CCNNNNNNNGG	5 cut(s)	74, 122, 136, 149, 324
BsoBI	CYCGRG	2 cut(s)	68, 375
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 221
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	141, 154, 316, 372
BspT107I	GGYRCC	2 cut(s)	139, 314
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	85, 310, 323
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	85, 310
Bst2UI	CCWGG	3 cut(s)	213, 325, 387
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	2 cut(s)	410, 428
BstC8I	GCNNGC	2 cut(s)	138, 400
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	52, 175, 318, 372
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 404
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 261, 410, 419, 428
BstNI	CCWGG	3 cut(s)	213, 325, 387
BstSCI	CCNGG	4 cut(s)	148, 211, 323, 385
BstV2I	GAAGAC	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	52, 175, 318, 372
Cac8I	GCNNGC	2 cut(s)	138, 400
CfoI	GCGC	2 cut(s)	142, 404
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	73, 315, 437
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	7 cut(s)	95, 136, 155, 170, 186, 282, 465
CviKI_1	RGCY	7 cut(s)	95, 136, 155, 170, 186, 282, 465
CviQI	GTAC	3 cut(s)	73, 315, 437
DdeI	CTNAG	1 cut(s)	132
DinI	GGCGCC	1 cut(s)	141
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EciI	GGCGGA	2 cut(s)	51, 105
Eco130I	CCWWGG	2 cut(s)	85, 310
Eco32I	GATATC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	150, 249
Eco88I	CYCGRG	2 cut(s)	68, 375
EcoRII	CCWGG	3 cut(s)	211, 323, 385
EcoRV	GATATC	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	85, 310
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	85, 310
FaeI	CATG	1 cut(s)	464
FaiI	YATR	6 cut(s)	195, 219, 242, 330, 393, 462
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FatI	CATG	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	143, 146, 156
FokI	GGATG	4 cut(s)	39, 162, 305, 379
Fsp4HI	GCNGC	3 cut(s)	143, 146, 156
FspBI	CTAG	1 cut(s)	357
FspI	TGCGCA	1 cut(s)	403
GlaI	GCGC	2 cut(s)	141, 403
GluI	GCNGC	3 cut(s)	143, 146, 156
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	2 cut(s)	137, 149
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	142, 404
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	2 cut(s)	140, 402
HinP1I	GCGC	2 cut(s)	140, 402
HinfI	GANTC	2 cut(s)	126, 276
HpaII	CCGG	2 cut(s)	137, 149
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	2 cut(s)	124, 255
HpyAV	CCTTC	3 cut(s)	174, 224, 266
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	338, 422, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 261, 410, 419, 428
HpyF3I	CTNAG	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	2 cut(s)	140, 402
KasI	GGCGCC	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	318
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	357
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	20, 298
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	3 cut(s)	339, 348, 426
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	17, 69, 123, 141, 449
MroNI	GCCGGC	1 cut(s)	136
MspI	CCGG	2 cut(s)	137, 149
MspR9I	CCNGG	4 cut(s)	150, 213, 325, 387
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	3 cut(s)	213, 325, 387
MwoI	GCNNNNNNNGC	5 cut(s)	142, 261, 410, 419, 428
NaeI	GCCGGC	1 cut(s)	138
NarI	GGCGCC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	4 cut(s)	141, 154, 316, 372
NmeAIII	GCCGAG	1 cut(s)	258
NsbI	TGCGCA	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	144, 147, 157
PleI	GAGTC	1 cut(s)	270
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	211, 323, 385
PspGI	CCWGG	3 cut(s)	211, 323, 385
PspN4I	GGNNCC	4 cut(s)	141, 154, 316, 372
PspPI	GGNCC	1 cut(s)	370
RsaI	GTAC	3 cut(s)	74, 316, 438
RsaNI	GTAC	3 cut(s)	73, 315, 437
SatI	GCNGC	3 cut(s)	143, 146, 156
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	4 cut(s)	150, 213, 325, 387
SetI	ASST	4 cut(s)	172, 188, 241, 460
SfoI	GGCGCC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	370
Sse9I	AATT	3 cut(s)	339, 348, 426
SsiI	CCGC	7 cut(s)	62, 110, 116, 143, 146, 156, 221
SspDI	GGCGCC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	148, 211, 323, 385
StyI	CCWWGG	2 cut(s)	85, 310
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	3 cut(s)	339, 348, 426
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	3 cut(s)	145, 148, 158
TfiI	GAWTC	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	370
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.