Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

39280809 .. 39283661

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1275700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAAACAAAAATAAATCTAATTGACTTGTTGACTGGCTCCGACAGCTCGCACCTCGCAATCAATCTCAAAGTCTTAACTCCTAAGTTTCCAACTTCCAGCGACCAAAACTCCGAACTCCAAATCCAAATCACACAACACAAAAAACTCGAAAACCAACAATTATTACAAGAAAATATGGGCGAAGACGAAAAGAAGAGGGGAGTCTCAAGTGATCCTCATCACCACTATCCGCCTCCACCCCCCGAGTACGGGACGTTCCAAGGAGTAGCCAACTACCCACCACCGCCTCCCCCGTATCACCCTCCGCCGACCGGGTTCCCTCAGCCTGTGCCGCCGCCGGGAGCCGGTGGCCCTTCAGCGCCTCATCCTGACTACTACACTCATGGATATCAAACCGTTCCTGGTTATGCAGTTGCTGAAGGACGACCAGTAAGAGAGCGTCGCCTTCCTTGCTGTGGTTTTGGACTTGGCTGGTGCCTGTTTATCATTGGTTTCGTCCTAGCTACCGTCCCCTGGTATGTTGGTGCATTTATCTTACTTTGCGCCAGGATAGACCCCCGAGAGAAACCAGGATATATCGCTTGTACACTTGGCGCTATTCTTGCAACAGTCGCTATTGTACTAGGTGCAACGAAGGGAAGTCATGACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.73

Weight (kDa)

7.7

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	477
AciI	CCGC	5 cut(s)	233, 287, 308, 335, 338
AclWI	GGATC	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	342, 441
AfaI	GTAC	3 cut(s)	251, 589, 624
AfiI	CCNNNNNNNGG	7 cut(s)	251, 252, 314, 341, 347, 458, 516
AgeI	ACCGGT	1 cut(s)	651
AjnI	CCWGG	4 cut(s)	403, 515, 548, 571
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	2 cut(s)	48, 506
AluI	AGCT	2 cut(s)	48, 506
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	2 cut(s)	245, 561
AoxI	GGCC	1 cut(s)	352
AsiGI	ACCGGT	1 cut(s)	651
AspLEI	GCGC	3 cut(s)	364, 548, 599
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	2 cut(s)	316, 342
AsuHPI	GGTGA	2 cut(s)	215, 293
AvaI	CYCGRG	2 cut(s)	245, 561
BanI	GGYRCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	324
BciT130I	CCWGG	4 cut(s)	405, 517, 550, 573
BcnI	CCSGG	2 cut(s)	316, 342
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	503, 626
BfoI	RGCGCY	2 cut(s)	365, 600
BisI	GCNGC	2 cut(s)	335, 338
BlsI	GCNGC	2 cut(s)	336, 339
Bme1390I	CCNGG	6 cut(s)	316, 342, 405, 517, 550, 573
BmeT110I	CYCGRG	2 cut(s)	245, 561
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	4 cut(s)	40, 320, 346, 479
BmrFI	CCNGG	6 cut(s)	316, 342, 405, 517, 550, 573
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	193
BpuMI	CCSGG	2 cut(s)	316, 342
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	262, 515
BsaWI	WCCGGW	1 cut(s)	651
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	7 cut(s)	251, 252, 314, 341, 347, 458, 516
Bse118I	RCCGGY	2 cut(s)	347, 651
Bse1I	ACTGG	2 cut(s)	40, 431
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	4 cut(s)	405, 517, 550, 573
BseDI	CCNNGG	2 cut(s)	262, 515
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	7 cut(s)	251, 252, 314, 341, 347, 458, 516
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	40, 431
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	477
BshTI	ACCGGT	1 cut(s)	651
BsiEI	CGRYCG	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	245, 561
BsiSI	CCGG	4 cut(s)	315, 341, 348, 652
BslFI	GGGAC	2 cut(s)	268, 497
BslI	CCNNNNNNNGG	7 cut(s)	251, 252, 314, 341, 347, 458, 516
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	268, 497
BsnI	GGCC	1 cut(s)	354
BsoBI	CYCGRG	2 cut(s)	245, 561
Bsp1407I	TGTACA	1 cut(s)	587
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	5 cut(s)	233, 287, 308, 335, 338
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	4 cut(s)	40, 320, 346, 479
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	477
BsrFI	RCCGGY	2 cut(s)	347, 651
BsrGI	TGTACA	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	40, 431
BssAI	RCCGGY	2 cut(s)	347, 651
BssECI	CCNNGG	2 cut(s)	262, 515
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	4 cut(s)	405, 517, 550, 573
Bst4CI	ACNGT	3 cut(s)	400, 511, 613
Bst6I	CTCTTC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	84, 324
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	2 cut(s)	365, 600
BstHHI	GCGC	3 cut(s)	364, 548, 599
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 334, 453, 605, 614
BstNI	CCWGG	4 cut(s)	405, 517, 550, 573
BstSCI	CCNGG	6 cut(s)	314, 340, 403, 515, 548, 571
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	3 cut(s)	364, 548, 599
Cfr10I	RCCGGY	2 cut(s)	347, 651
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	250, 588, 623
CspAI	ACCGGT	1 cut(s)	651
CviAII	CATG	2 cut(s)	386, 647
CviJI	RGCY	8 cut(s)	39, 48, 272, 328, 347, 354, 474, 506
CviKI_1	RGCY	8 cut(s)	39, 48, 272, 328, 347, 354, 474, 506
CviQI	GTAC	3 cut(s)	250, 588, 623
DdeI	CTNAG	2 cut(s)	84, 324
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	2 cut(s)	222, 297
Eco130I	CCWWGG	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	392
Eco57I	CTGAAG	2 cut(s)	342, 441
Eco88I	CYCGRG	2 cut(s)	245, 561
EcoRII	CCWGG	4 cut(s)	403, 515, 548, 571
EcoRV	GATATC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	389, 650
FaiI	YATR	6 cut(s)	179, 387, 411, 522, 579, 648
FaqI	GGGAC	2 cut(s)	268, 497
FatI	CATG	2 cut(s)	385, 646
Fnu4HI	GCNGC	2 cut(s)	335, 338
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	335, 338
FspBI	CTAG	2 cut(s)	503, 626
GlaI	GCGC	3 cut(s)	363, 547, 598
GluI	GCNGC	2 cut(s)	335, 338
HaeII	RGCGCY	2 cut(s)	365, 600
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	4 cut(s)	315, 341, 348, 652
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	364, 548, 599
Hin1II	CATG	2 cut(s)	389, 650
Hin6I	GCGC	3 cut(s)	362, 546, 597
HinP1I	GCGC	3 cut(s)	362, 546, 597
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	4 cut(s)	315, 341, 348, 652
HphI	GGTGA	2 cut(s)	215, 293
Hpy166II	GTNNAC	2 cut(s)	33, 590
Hpy188I	TCNGA	2 cut(s)	43, 115
Hpy188III	TCNNGA	2 cut(s)	371, 647
Hpy8I	GTNNAC	2 cut(s)	33, 590
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	4 cut(s)	366, 416, 458, 631
HpyCH4III	ACNGT	3 cut(s)	400, 511, 613
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	4 cut(s)	413, 530, 608, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 334, 453, 605, 614
HpyF3I	CTNAG	2 cut(s)	84, 324
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	2 cut(s)	389, 650
HspAI	GCGC	3 cut(s)	362, 546, 597
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	44, 344
MaeI	CTAG	2 cut(s)	503, 626
MaeII	ACGT	1 cut(s)	257
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	197, 208
MluCI	AATT	2 cut(s)	21, 161
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	66, 116
MnlI	CCTC	8 cut(s)	65, 192, 228, 246, 300, 315, 333, 375
MseI	TTAA	1 cut(s)	77
MspI	CCGG	4 cut(s)	315, 341, 348, 652
MspR9I	CCNGG	6 cut(s)	316, 342, 405, 517, 550, 573
MvaI	CCWGG	4 cut(s)	405, 517, 550, 573
MwoI	GCNNNNNNNGC	5 cut(s)	45, 334, 453, 605, 614
NciI	CCSGG	2 cut(s)	316, 342
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	389, 650
NlaIV	GGNNCC	4 cut(s)	40, 320, 346, 479
PagI	TCATGA	1 cut(s)	646
PinAI	ACCGGT	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	336, 339
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	4 cut(s)	403, 515, 548, 571
PspGI	CCWGG	4 cut(s)	403, 515, 548, 571
PspN4I	GGNNCC	4 cut(s)	40, 320, 346, 479
PspPI	GGNCC	1 cut(s)	353
PsrI	GAACNNNNNNTAC	2 cut(s)	242, 274
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	251, 589, 624
RsaNI	GTAC	3 cut(s)	250, 588, 623
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	335, 338
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	6 cut(s)	316, 342, 405, 517, 550, 573
SetI	ASST	5 cut(s)	50, 57, 260, 508, 631
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	21, 161
SsiI	CCGC	5 cut(s)	233, 287, 308, 335, 338
SspMI	CTAG	2 cut(s)	503, 626
StyD4I	CCNGG	6 cut(s)	314, 340, 403, 515, 548, 571
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	400, 511, 613
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	21, 161
TatI	WGTACW	2 cut(s)	587, 622
TauI	GCSGC	2 cut(s)	337, 340
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	2 cut(s)	503, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.