Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Reverse (-)

9310786 .. 9311544

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTCTTCGTTTCTATCAGGCGGCGGTGTTGGTGGGGAAGACTGATGAGCGATCGGCTTGGAGGAAGGAGCCAGAGGCCAGATCATGGCAGCGGTACGCCATGGATCGTATGGCACTGATTTCTAATCTACGGTGTGTTGCTAGACGGAGGCGGCAGCTGTGGTGGATTTGGGCTCTCAAGATGGTGGGCATGGCGGCGGCATGGTACGGTAATGTTTTCACCAATTTCTCGGTGATAGAATTGGTGTGGCTTGCCGCATGGTATCATCGACTTGGGGTGCTCGAAGACATGGAATTGAGGTGGTGGCCTGCCGGCCGGATTCCTGATGACAAGGAAGAAGAGTACTATGGCAGCGTTTCTCTATTTTTGGTTAGAATCTTGTTTTTGGTTAGGTTGGTTAGAGTCTTGTTTTCAGTTAGGTTGGTGGCTAGGTTCTTTTGGTCAATAGTTGGTCCCTCCTCTGTTGAGCGAGGGTTGGGTCAAATTGATGTGCCATGGAGGTGCTGTCTTTCCTGGGGACGGGTTGTTTTAGTTTCGGTTTTATCTTATGGTCAATGTGCTGACAAGCGATCCTTGCACGTGGTCTGGCTTCATTGGGATGCGGTGTGGAAGAGGGTGTTGGTTTTTATGGCGGTTGTCTATGAGGTGTTATCGATATTCTCGGGATTATCTGTAGCCTGTGAGGTTGGGCGACATTGTTGGTTAGGGGTTGGGCTCTTTTGGCTCATGGAAGTCATTCTTAATGACGACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

29.55

Weight (kDa)

9.38

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AciI	CCGC	9 cut(s)	23, 26, 94, 154, 197, 200, 258, 605, 635
AclWI	GGATC	2 cut(s)	114, 567
AcoI	YGGCCR	1 cut(s)	316
AcvI	CACGTG	1 cut(s)	583
AfaI	GTAC	3 cut(s)	98, 209, 347
AfiI	CCNNNNNNNGG	2 cut(s)	87, 522
AjnI	CCWGG	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	114, 567
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	3 cut(s)	78, 308, 316
ApeKI	GCWGC	3 cut(s)	91, 157, 354
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	214, 247
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	455
BanII	GRGCYC	2 cut(s)	178, 720
BbrPI	CACGTG	1 cut(s)	583
BbsI	GAAGAC	2 cut(s)	47, 294
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	103, 169, 366
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	517
BfaI	CTAG	2 cut(s)	144, 432
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	8 cut(s)	24, 92, 155, 158, 198, 201, 258, 355
BlsI	GCNGC	8 cut(s)	25, 93, 156, 159, 199, 202, 259, 356
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	72, 457
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	47, 294
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	583
BsaJI	CCNNGG	3 cut(s)	102, 497, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 522
Bse118I	RCCGGY	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	517
BseCI	ATCGAT	1 cut(s)	656
BseDI	CCNNGG	3 cut(s)	102, 497, 516
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	87, 522
BseRI	GAGGAG	1 cut(s)	451
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	103, 169, 366
Bsh1285I	CGRYCG	2 cut(s)	56, 319
BshFI	GGCC	3 cut(s)	80, 310, 318
BshVI	ATCGAT	1 cut(s)	656
BsiEI	CGRYCG	2 cut(s)	56, 319
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	315, 319
BslFI	GGGAC	2 cut(s)	441, 534
BslI	CCNNNNNNNGG	2 cut(s)	87, 522
BsmFI	GGGAC	2 cut(s)	441, 534
BsnI	GGCC	3 cut(s)	80, 310, 318
BsoBI	CYCGRG	1 cut(s)	664
Bsp1286I	GDGCHC	3 cut(s)	178, 285, 720
Bsp143I	GATC	4 cut(s)	53, 83, 106, 572
Bsp19I	CCATGG	2 cut(s)	102, 497
BspACI	CCGC	9 cut(s)	23, 26, 94, 154, 197, 200, 258, 605, 635
BspANI	GGCC	3 cut(s)	80, 310, 318
BspDI	ATCGAT	1 cut(s)	656
BspLI	GGNNCC	2 cut(s)	72, 457
BspPI	GGATC	2 cut(s)	114, 567
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	102, 497, 516
BssMI	GATC	4 cut(s)	53, 83, 106, 572
BssT1I	CCWWGG	2 cut(s)	102, 497
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	135, 212
Bst6I	CTCTTC	3 cut(s)	12, 336, 608
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	3 cut(s)	255, 312, 316
BstDSI	CCRYGG	2 cut(s)	102, 497
BstF5I	GGATG	1 cut(s)	607
BstKTI	GATC	4 cut(s)	56, 86, 109, 575
BstMBI	GATC	4 cut(s)	53, 83, 106, 572
BstMCI	CGRYCG	2 cut(s)	56, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 724
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	3 cut(s)	103, 169, 366
BstV2I	GAAGAC	2 cut(s)	47, 294
BstZI	CGGCCG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	80, 310, 318
BsuTUI	ATCGAT	1 cut(s)	656
BtgI	CCRYGG	2 cut(s)	102, 497
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	255, 312, 316
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	97, 208, 346
CviAII	CATG	8 cut(s)	87, 103, 193, 204, 261, 292, 498, 730
CviQI	GTAC	3 cut(s)	97, 208, 346
DpnI	GATC	4 cut(s)	55, 85, 108, 574
DpnII	GATC	4 cut(s)	53, 83, 106, 572
EaeI	YGGCCR	1 cut(s)	316
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	12, 336, 608
EarI	CTCTTC	3 cut(s)	12, 336, 608
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	102, 497
Eco24I	GRGCYC	2 cut(s)	178, 720
Eco47I	GGWCC	1 cut(s)	455
Eco52I	CGGCCG	1 cut(s)	316
Eco72I	CACGTG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	102, 497
EcoT38I	GRGCYC	2 cut(s)	178, 720
ErhI	CCWWGG	2 cut(s)	102, 497
FaeI	CATG	8 cut(s)	90, 106, 196, 207, 264, 295, 501, 733
FalI	AAGNNNNNCTT	4 cut(s)	560, 592, 726, 758
FaqI	GGGAC	2 cut(s)	441, 534
FatI	CATG	8 cut(s)	86, 102, 192, 203, 260, 291, 497, 729
Fnu4HI	GCNGC	8 cut(s)	24, 92, 155, 158, 198, 201, 258, 355
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	2 cut(s)	178, 720
Fsp4HI	GCNGC	8 cut(s)	24, 92, 155, 158, 198, 201, 258, 355
FspBI	CTAG	2 cut(s)	144, 432
GluI	GCNGC	8 cut(s)	24, 92, 155, 158, 198, 201, 258, 355
HaeIII	GGCC	3 cut(s)	80, 310, 318
HapII	CCGG	2 cut(s)	315, 319
Hin1II	CATG	8 cut(s)	90, 106, 196, 207, 264, 295, 501, 733
HinfI	GANTC	3 cut(s)	322, 378, 405
HpaII	CCGG	2 cut(s)	315, 319
HphI	GGTGA	2 cut(s)	214, 247
Hpy188III	TCNNGA	3 cut(s)	181, 326, 666
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	135, 212
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 724
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	8 cut(s)	90, 106, 196, 207, 264, 295, 501, 733
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	53, 83, 106, 572
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	103, 169, 366
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	144, 432
MaeII	ACGT	1 cut(s)	582
MalI	GATC	4 cut(s)	55, 85, 108, 574
MboI	GATC	4 cut(s)	53, 83, 106, 572
MboII	GAAGA	5 cut(s)	52, 299, 350, 353, 625
MhlI	GDGCHC	3 cut(s)	178, 285, 720
MluCI	AATT	4 cut(s)	226, 242, 296, 486
MlyI	GAGTC	1 cut(s)	414
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	2 cut(s)	502, 600
MspA1I	CMGCKG	2 cut(s)	94, 160
MspI	CCGG	2 cut(s)	315, 319
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	2 cut(s)	577, 724
NaeI	GCCGGC	1 cut(s)	316
NcoI	CCATGG	2 cut(s)	102, 497
NdeII	GATC	4 cut(s)	53, 83, 106, 572
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	8 cut(s)	90, 106, 196, 207, 264, 295, 501, 733
NlaIV	GGNNCC	2 cut(s)	72, 457
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	322, 378
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	8 cut(s)	25, 93, 156, 159, 199, 202, 259, 356
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	413
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	515
PspCI	CACGTG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	2 cut(s)	72, 457
PspPI	GGNCC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	3 cut(s)	98, 209, 347
RsaNI	GTAC	3 cut(s)	97, 208, 346
RseI	CAYNNNNRTG	2 cut(s)	502, 600
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	8 cut(s)	24, 92, 155, 158, 198, 201, 258, 355
Sau3AI	GATC	4 cut(s)	53, 83, 106, 572
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	3 cut(s)	178, 285, 720
SetI	ASST	9 cut(s)	162, 305, 398, 425, 437, 506, 585, 651, 690
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	502, 600
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	226, 242, 296, 486
SsiI	CCGC	9 cut(s)	23, 26, 94, 154, 197, 200, 258, 605, 635
SspMI	CTAG	2 cut(s)	144, 432
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	2 cut(s)	102, 497
TaaI	ACNGT	2 cut(s)	135, 212
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	271, 285, 656
TasI	AATT	4 cut(s)	226, 242, 296, 486
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	5 cut(s)	26, 157, 200, 203, 260
TfiI	GAWTC	2 cut(s)	322, 378
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	3 cut(s)	91, 157, 354
TspDTI	ATGAA	1 cut(s)	584
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	144, 432
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.