Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008263

Physical Location & Seq

Genomic Coordinates Forward (+)

8734057 .. 8737000

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGCGAAGATGAAAAGAAGAAAGGAGCAGCAAGTGATCATCAGCAGTATCCGCATCCACCTGAGTATGGAACGTTCCAAGGCGTAGCCAACTATCCGCCGCCGCCACCGCCGCATCAGCCACCGCCGACAGGATTCCCTCAGCCGGTTCCGCCGCCTGGAGCTGCCGACCCTCCTGCTCCTCATCCTCAGTACTACACTCAGGGATATCAAACTGTTCAAGGCTATGCAGTTGCTGAAGGAAGACCAGTAAGAGAGCGCCGCCTTCCTTGCTGTGGCATTGGCTGTGGCTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTACCGTCCCCTGGTATATCGGTGCACTTATCATGCTATGTGCCAGGATAGACCACCGAGAGAAACCAGGATATATTGCTTGTGCAGTTGGTGCTGTTCTTGCTACAATTGCTATCATCCTCGGTGCAACAAAGGGAGGTAATGCCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.89

Weight (kDa)

7.66

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17080 AT1G53560
fragaria_vesca	FvH4_3g17030
malus_domestica	MD00G1185700.v1.1 MD03G1254000.v1.1 MD11G1275700.v1.1
prunus_persica	Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1 Prupe.4G152400_v2.0.a1
pyrus_communis	pycom03g20160 pycom11g24390
rosa_chinensis	RchiOBHm_Chr5g0028371
rosa_laevigata	RLG00000033089
rosa_multiflora	Rmu_sc0001561.1_g000017 Rmu_sc0006071.1_g000001 Rmu_sc0008526.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051340
rosa_rugosa	Rorug05G0105900
rosa_samantha	Rh5AG199700 Rh5BG198200 Rh5CG218200 Rh5DG200100
rosa_wichuraiana	Rw5G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	6 cut(s)	68, 131, 145, 158, 275, 333
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	5 cut(s)	157, 332, 365, 388, 467
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	29, 164
AspLEI	GCGC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	41, 151
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	5 cut(s)	159, 334, 367, 390, 469
BciVI	GTATCC	1 cut(s)	60
BclI	TGATCA	1 cut(s)	37
BfoI	RGCGCY	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	7 cut(s)	30, 101, 104, 113, 155, 165, 262
BlsI	GCNGC	7 cut(s)	31, 102, 105, 114, 156, 166, 263
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	5 cut(s)	159, 334, 367, 390, 469
BmiI	GGNNCC	2 cut(s)	150, 296
BmrFI	CCNGG	5 cut(s)	159, 334, 367, 390, 469
BmsI	GCATC	2 cut(s)	64, 124
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	79, 332, 442
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 131, 145, 158, 275, 333
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	5 cut(s)	159, 334, 367, 390, 469
BseDI	CCNNGG	3 cut(s)	79, 332, 442
BseGI	GGATG	3 cut(s)	55, 184, 438
BseLI	CCNNNNNNNGG	6 cut(s)	68, 131, 145, 158, 275, 333
BseMII	CTCAG	4 cut(s)	54, 155, 203, 215
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	41, 151
BsgI	GTGCAG	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	6 cut(s)	68, 131, 145, 158, 275, 333
BsmFI	GGGAC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	37
BspCNI	CTCAG	4 cut(s)	55, 154, 202, 214
BspLI	GGNNCC	2 cut(s)	150, 296
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	79, 332, 442
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	159, 334, 367, 390, 469
Bst4CI	ACNGT	2 cut(s)	217, 328
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	4 cut(s)	63, 141, 189, 201
BstF5I	GGATG	3 cut(s)	55, 184, 438
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 109, 112, 118, 151, 270, 413, 422, 431
BstNI	CCWGG	5 cut(s)	159, 334, 367, 390, 469
BstSCI	CCNGG	5 cut(s)	157, 332, 365, 388, 467
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	41, 151
BstV2I	GAAGAC	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	55, 184, 438
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	7 cut(s)	89, 121, 145, 164, 225, 285, 291
CviKI_1	RGCY	7 cut(s)	89, 121, 145, 164, 225, 285, 291
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	4 cut(s)	63, 141, 189, 201
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EciI	GGCGGA	2 cut(s)	87, 141
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	5 cut(s)	157, 332, 365, 388, 467
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	69, 228, 339, 356, 361, 396
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	7 cut(s)	30, 101, 104, 113, 155, 165, 262
FokI	GGATG	3 cut(s)	42, 171, 425
Fsp4HI	GCNGC	7 cut(s)	30, 101, 104, 113, 155, 165, 262
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	7 cut(s)	30, 101, 104, 113, 155, 165, 262
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	262
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	233, 275
HpyCH4III	ACNGT	2 cut(s)	217, 328
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	230, 347, 407, 449
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 109, 112, 118, 151, 270, 413, 422, 431
HpyF3I	CTNAG	4 cut(s)	63, 141, 189, 201
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	26, 161, 184
Lsp1109I	GCAGC	2 cut(s)	41, 151
LweI	GCATC	2 cut(s)	64, 124
MaeII	ACGT	1 cut(s)	74
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	4 cut(s)	20, 31, 255, 307
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	429
MnlI	CCTC	6 cut(s)	150, 183, 192, 198, 452, 452
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	5 cut(s)	159, 334, 367, 390, 469
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	5 cut(s)	159, 334, 367, 390, 469
MwoI	GCNNNNNNNGC	9 cut(s)	52, 109, 112, 118, 151, 270, 413, 422, 431
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	150, 296
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	7 cut(s)	31, 102, 105, 114, 156, 166, 263
Psp1406I	AACGTT	1 cut(s)	74
Psp6I	CCWGG	5 cut(s)	157, 332, 365, 388, 467
PspGI	CCWGG	5 cut(s)	157, 332, 365, 388, 467
PspN4I	GGNNCC	2 cut(s)	150, 296
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	7 cut(s)	30, 101, 104, 113, 155, 165, 262
Sau3AI	GATC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	5 cut(s)	159, 334, 367, 390, 469
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	4 cut(s)	64, 77, 166, 463
SfaNI	GCATC	2 cut(s)	64, 124
Sse9I	AATT	1 cut(s)	429
StyD4I	CCNGG	5 cut(s)	157, 332, 365, 388, 467
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	217, 328
TaiI	ACGT	1 cut(s)	77
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	5 cut(s)	103, 106, 115, 157, 264
TfiI	GAWTC	1 cut(s)	135
TseI	GCWGC	2 cut(s)	29, 164
TspDTI	ATGAA	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.